BAC Information

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BAC

Clone NameB6Ng01-073D07
Chromosome2 (Build37)
Map Location 34,747,198 - 34,915,676
singlet/doubletdoublet
Overlap geneD730039F16Rik, Phf19, Traf1, Hc
Upstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D07.bB6Ng01-073D07.g
ACCDH890404DH890405
length1,003934
definitionDH890404|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D07, 5' end.DH890405|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,747,198 - 34,748,202)(34,914,752 - 34,915,676)
sequence
gaattccactggtggctgaggagtggagatttttggtcttaaaataccag
tttctgaagtatacacaagtcttgaaaaccctacttaaaatgaccccaga
tggaccatgttgctttttggagaaagtccagtttataggtcttcctttca
gaacgctgtcctttccattcccacctcaagtgtcccctgtgtggcagatg
ggtgaccctaccctgcactgtccctgtgctcatgaagtcccctctacctt
tgaaaagcctctctcctgggtcggaggtcagaggcctgtctgaatcttgt
tgatctcttgcccaaggcttaagaattacttcccaagttgacatttcagt
ttcaaggatttaaataaacaaagctttctctacaccatgaatttactttt
aagttgtaataggcataatgtctattttttttaaaaaaaatctaagagac
tattatacctgtggttttaattgatttgtattctgtggtatgtatgtcat
caacataacctttcttgagctgtttaggaagcttcttatccttttttttt
cttttcttttctttttttttttttttttttttggtttttccagacagggt
ttctctgtatagccctggctgttctggaactcgctctgtagaccaagctg
gcctcgaactcagaaattcgcctgcctctgcctcccaagtgctgggatta
aaggcgtgcgccaccatgcccggaggaagctttcctgtcttattttggct
aaattaggcttatccgttatccccattttgctggtggaatctaaggccag
aggggcatgagccacctaaggggaacatgaggatgtgaacagagtcagat
tctaaaccaagcccctccccacttttattcaaaggggttatcaatctctc
acagacatctgccagcagcctgacactttgtacattcattggggggtttc
ttcctgccccaattggaggggtgtaccccactccctggaaggaagggaga
gta
gaattcttcctggcccttatacaaaagcatctcctcgcgttctctgaaaa
catgagcaaggatacggtttacatcacagtgcttaattgcttggtggttc
agcaaaaatatttgaacctcattctagttagctttcttaccattgagaca
aaatacaggataggagcaatttaaaagaggaatttgtttcatttcacaaa
gatttcagagccatcacttactggaagggtgtgatagacagggcagttcc
tgatggggcagctcagaaatagagagagaatgcgtgccctcaagaggcca
cccccttctctttgcatgtgatcccttggtctatggcatgttgtcattac
ccatattcaaggtatgtggatggcagtccttagttaattaattctctctg
aaaacaactcatagacacaactggccagatgtgctttattactgggcctt
gagacatttttcagtccaagaaagatgatgccctgaacaacttccttgta
ataggttcttcaggtaggagaagagcttgtattctagataaagaagcaga
aaatgaatgaatgacccaatgaaagaatgaataagtaaggacaggtagct
ttagtattatgaagaacaaatgagagagtacagaagccaaggggccattg
tttttaaagcaacaccaggaaaggacctttttacaaatgtcatatgcaaa
tggaaccagaaggaaataggaggatgctgtgcaaatgtctgcagaaaata
gaaaacaaccccgagtaatatccctgccctgtgccagttcactggccctg
agcttctgagagtgtggaaaatttgcaagtggaaattttcttccctagac
acagggctgctgcatccatacggaccagcttatattggaggggaagttcc
tgctgccaatgtttaaaacatttatgtattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34747198_34748202
seq2: B6Ng01-073D07.b_42_1044

seq1  GAATTCCACTGGTGGCTGAGGAGTGGAGATTTCTGGTCTTAAAATACCAG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCACTGGTGGCTGAGGAGTGGAGATTTTTGGTCTTAAAATACCAG  50

seq1  TTTCTGAAGTATACACAAGTCTTGAAAACCCTACTTAAAATGACCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGTATACACAAGTCTTGAAAACCCTACTTAAAATGACCCCAGA  100

seq1  TGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCATGTTGCTTTTTGGAGAAAGTCCAGTTTATAGGTCTTCCTTTCA  150

seq1  GAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGTCCTTTCCATTCCCACCTCAAGTGTCCCCTGTGTGGCAGATG  200

seq1  GGTGACCCTACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCTACCCTGCACTGTCCCTGTGCTCATGAAGTCCCCTCTACCTT  250

seq1  TGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCTCTCTCCTGGGTCGGAGGTCAGAGGCCTGTCTGAATCTTGT  300

seq1  TGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTGCCCAAGGCTTAAGAATTACTTCCCAAGTTGACATTTCAGT  350

seq1  TTCAAGGATTTAAATAAACAAAGCTTTCTCTACACCATGAATTTACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATTTAAATAAACAAAGCTTTCTCTACACCATGAATTTACTTTT  400

seq1  AAGTTGTAATAGGCATAATGTCTATTTTTTTTAAAAAAAATCTAAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAATAGGCATAATGTCTATTTTTTTTAAAAAAAATCTAAGAGAC  450

seq1  TATTATACCTGTGGTTTTAATTGATTTGTATTCTGTGGTATGTATGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACCTGTGGTTTTAATTGATTTGTATTCTGTGGTATGTATGTCAT  500

seq1  CAACATAACCTTTCTTGAGCTGTTTAGGAAGCTTCTTATCCTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAACCTTTCTTGAGCTGTTTAGGAAGCTTCTTATCCTTTTTTTTT  550

seq1  CTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGT  600
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTGGTTTTTCCAGACAGGGT  600

seq1  TTCTCTGTATAGCCCTGGCTGTTCTGGAACTCGCTCTGTAGACCAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAGCCCTGGCTGTTCTGGAACTCGCTCTGTAGACCAAGCTG  650

seq1  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  700
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA  700

seq1  AAGGCGTGCGCCACCATGCCCGGAGGAAGC-TTCCTGTCTTATTTTGGCT  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGCGTGCGCCACCATGCCCGGAGGAAGCTTTCCTGTCTTATTTTGGCT  750

seq1  AAGTTAGGCTTATCCGTTATCCCCATTTTGCTGGTGGAATCTAAGGCCAG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGCTTATCCGTTATCCCCATTTTGCTGGTGGAATCTAAGGCCAG  800

seq1  A-GGGCATGAGCCACCTAAGGGGAACATGAGGATGTGAACAGGAGTCAGA  848
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGGGCATGAGCCACCTAAGGGGAACATGAGGATGTGAACA-GAGTCAGA  849

seq1  TTCTAAACCAAGCACCTCCCCACTTTTTATTCAAAGGGGTTAATCAGTCC  898
      ||||||||||||| ||||||||| ||||||||||||||||| |||| || 
seq2  TTCTAAACCAAGCCCCTCCCCAC-TTTTATTCAAAGGGGTT-ATCAATCT  897

seq1  CTCACAGACATCTGCCAGTCAGCCTGACAC-TTGTACATTCATTGTGGTG  947
      |||||||||||||||||| ||||||||||| |||||||||||||| || |
seq2  CTCACAGACATCTGCCAG-CAGCCTGACACTTTGTACATTCATTGGGGGG  946

seq1  TTTCTTCCTTGCCACAGATTTGGAGGGTGTAACCCACTCCATGG-AGGAA  996
      |||||||| |||| || ||| |  ||||||| |||||||| ||| |||||
seq2  TTTCTTCC-TGCCCCA-ATTGGAGGGGTGTACCCCACTCCCTGGAAGGAA  994

seq1  GGGAGAGTA  1005
      |||||||||
seq2  GGGAGAGTA  1003

seq1: chr2_34914752_34915676
seq2: B6Ng01-073D07.g_68_1001 (reverse)

seq1  AAATAAATACATAAATGTTTTAAAACATTGGCAGCA-GAACTT-CCCTCC  48
      |||| |||||||||||||||| |||||||||||||| |||||| ||||||
seq2  AAAT-AATACATAAATGTTTT-AAACATTGGCAGCAGGAACTTCCCCTCC  48

seq1  -ATATAAGCTGGTCCGTATGGATGCAGCAG-CCTGTGTCTA-GGAAG-AA  94
       ||||||||||||||||||||||||||||| |||||||||| ||||| ||
seq2  AATATAAGCTGGTCCGTATGGATGCAGCAGCCCTGTGTCTAGGGAAGAAA  98

seq1  ATTTCACCTTGCATATTTTTCCACACTCTCAGAAGCTCA-GGCCAGTGAA  143
      |||||  |||||| | ||||||||||||||||||||||| ||||||||||
seq2  ATTTCCACTTGCA-AATTTTCCACACTCTCAGAAGCTCAGGGCCAGTGAA  147

seq1  CTGGCACA-GGCAGGGATATTACTC-GGGTTG-TTTCTATTTTCTGCAGA  190
      |||||||| |||||||||||||||| |||||| |||||||||||||||||
seq2  CTGGCACAGGGCAGGGATATTACTCGGGGTTGTTTTCTATTTTCTGCAGA  197

seq1  CATTTGCACAGCATCCTCCTATTTCCTTCTGGTTCCATTTGCATATGACA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCACAGCATCCTCCTATTTCCTTCTGGTTCCATTTGCATATGACA  247

seq1  TTTGT-AAAAGGTCCTTTCCTGGTGTTGCTTT-AAAACAATGGCCCCTTG  288
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGTAAAAAGGTCCTTTCCTGGTGTTGCTTTAAAAACAATGGCCCCTTG  297

seq1  GCTTCTGTACTCTCTCATTTGTTCTTCATAATACTAAAGCTACCTGTCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTACTCTCTCATTTGTTCTTCATAATACTAAAGCTACCTGTCCT  347

seq1  TACTTATTCATTCTTTCATTGGGTCATTCATTCATTTTCTGCTTCTTTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTCATTCTTTCATTGGGTCATTCATTCATTTTCTGCTTCTTTAT  397

seq1  CTAGAATACAAGCTCTTCTCCTACCTGAAGAACCTATTACAAGGAAGTTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATACAAGCTCTTCTCCTACCTGAAGAACCTATTACAAGGAAGTTG  447

seq1  TTCAGGGCATCATCTTTCTTGGACTGAAAAATGTCTCAAGGCCCAGTAAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCATCATCTTTCTTGGACTGAAAAATGTCTCAAGGCCCAGTAAT  497

seq1  AAAGCACATCTGGCCAGTTGTGTCTATGAGTTGTTTTCAGAGAGAATTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACATCTGGCCAGTTGTGTCTATGAGTTGTTTTCAGAGAGAATTAA  547

seq1  TTAACTAAGGACTGCCATCCACATACCTTGAATATGGGTAATGACAACAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAGGACTGCCATCCACATACCTTGAATATGGGTAATGACAACAT  597

seq1  GCCATAGACCAAGGGATCACATGCAAAGAGAAGGGGGTGGCCTCTTGAGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGACCAAGGGATCACATGCAAAGAGAAGGGGGTGGCCTCTTGAGG  647

seq1  GCACGCATTCTCTCTCTATTTCTGAGCTGCCCCATCAGGAACTGCCCTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCATTCTCTCTCTATTTCTGAGCTGCCCCATCAGGAACTGCCCTGT  697

seq1  CTATCACACCCTTCCAGTAAGTGATGGCTCTGAAATCTTTGTGAAATGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACACCCTTCCAGTAAGTGATGGCTCTGAAATCTTTGTGAAATGAA  747

seq1  ACAAATTCCTCTTTTAAATTGCTCCTATCCTGTATTTTGTCTCAATGGTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCCTCTTTTAAATTGCTCCTATCCTGTATTTTGTCTCAATGGTA  797

seq1  AGAAAGCTAACTAGAATGAGGTTCAAATATTTTTGCTGAACCACCAAGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTAACTAGAATGAGGTTCAAATATTTTTGCTGAACCACCAAGCA  847

seq1  ATTAAGCACTGTGATGTAAACCGTATCCTTGCTCATGTTTTCAGAGAACG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCACTGTGATGTAAACCGTATCCTTGCTCATGTTTTCAGAGAACG  897

seq1  CGAGGAGATGCTTTTGTATAAGGGCCAGGAAGAATTC  925
      |||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGATGCTTTTGTATAAGGGCCAGGAAGAATTC  934