BAC Information

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BAC

Clone NameB6Ng01-073G05
Chromosome2 (Build37)
Map Location 84,757,678 - 84,897,518
singlet/doubletdoublet
Overlap geneSlc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1
Upstream geneZswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2
Downstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073G05.bB6Ng01-073G05.g
ACCDH890538DH890539
length950240
definitionDH890538|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G05, 5' end.DH890539|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,896,859 - 84,897,518)(84,757,678 - 84,757,917)
sequence
gaattcacttaatttgaatgaatacagacacttgcccaacttctgaaccc
tccccgctatgcctgagccactgcctccagtgttgtcatcgcctgctgga
tctacttcttttccaacccctaaccccaacccccaatctcccctgccata
atctagttcccaaacctgtgcctttaaactgtatcgttaatgccccatcc
catcagtctcctgagagccacttattctttgaaaacagtggtcactggat
gaccaaaagcctgccagcatcacctttacaattcagagtggttccgagag
cagtcagctctctagcatcctttggttccgttccctgcactcttctgagg
tcatccatttagccccagcccttcccaataactctcatcaccaccatctc
cagtctcagcttcaagtcggccaccagcccagtccatttcctatttgtcc
tgttcattctttttatgtccccagctctctcattcctcaacccctttggg
aagcaagggtcaggaaccctacttcctcctcgcagctccatccccccacc
cccacccccaccccagccctcaactctctttttaccactatcaacagttg
cctttctcacaaccctcgatgcctttctctctgttcctcatactgtttaa
aatgcagctgtctgcccgctcaagaacctgggcagctacgtggctacaga
agaaacacatagcaatgacacttgatctcccttcagattcatcacctatc
tacaaaccggttccacagtgctcatcaacctactgcatcccaccccacac
ccacccatcactaccctatccccattccatgccccacagacaacgtctcc
cctcaagcttccaacacctccttcccatcctctctcactaacagccttgc
ttccggttctctgaaacagaagagaaagccaacactctgcacttgcctat

tcttgattcacactggggtgggtgctaccatgaccctcaacttaggtaat
gtgtccctggcatatacactgcagacccatggttcaaacatggacagttt
ggctcccagcaccatgttgtccatcttcaagactccaccatagggggcta
gggtgataatgtggatgcacaggctcctgacaaagcagcaggactaatat
ggtgggcagttgttccctcctcctcctcctcctcctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84896859_84897518
seq2: B6Ng01-073G05.b_42_704 (reverse)

seq1  AGACAGCTGCATTTT-AACAGTATGAGGAACAGAGAG-AAGGCATCGAGG  48
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  AGACAGCTGCATTTTAAACAGTATGAGGAACAGAGAGAAAGGCATCGAGG  50

seq1  GTTGTGAGAAAGGCAACTGTTGATAGTGGT-AAAAGAGAGTTGAGGGCTG  97
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTGTGAGAAAGGCAACTGTTGATAGTGGTAAAAAGAGAGTTGAGGGCTG  100

seq1  GGGTGGGGGTGGGGGTGGGGGGATGGAGCTGCGAGGAGGAAGTAGGGTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTGGGGGTGGGGGGATGGAGCTGCGAGGAGGAAGTAGGGTTC  150

seq1  CTGACCCTTGCTTCCCAAAGGGGTTGAGGAATGAGAGAGCTGGGGACATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTTGCTTCCCAAAGGGGTTGAGGAATGAGAGAGCTGGGGACATA  200

seq1  AAAAGAATGAACAGGACAAATAGGAAATGGACTGGGCTGGTGGCCGACTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGAACAGGACAAATAGGAAATGGACTGGGCTGGTGGCCGACTT  250

seq1  GAAGCTGAGACTGGAGATGGTGGTGATGAGAGTTATTGGGAAGGGCTGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAGACTGGAGATGGTGGTGATGAGAGTTATTGGGAAGGGCTGGG  300

seq1  GCTAAATGGATGACCTCAGAAGAGTGCAGGGAACGGAACCAAAGGATGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGGATGACCTCAGAAGAGTGCAGGGAACGGAACCAAAGGATGCT  350

seq1  AGAGAGCTGACTGCTCTCGGAACCACTCTGAATTGTAAAGGTGATGCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTGACTGCTCTCGGAACCACTCTGAATTGTAAAGGTGATGCTGG  400

seq1  CAGGCTTTTGGTCATCCAGTGACCACTGTTTTCAAAGAATAAGTGGCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTTGGTCATCCAGTGACCACTGTTTTCAAAGAATAAGTGGCTCT  450

seq1  CAGGAGACTGATGGGATGGGGCATTAACGATACAGTTTAAAGGCACAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACTGATGGGATGGGGCATTAACGATACAGTTTAAAGGCACAGGT  500

seq1  TTGGGAACTAGATTATGGCAGGGGAGATTGGGGGTTGGGGTTAGGGGTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACTAGATTATGGCAGGGGAGATTGGGGGTTGGGGTTAGGGGTTG  550

seq1  GAAAAGAAGTAGATCCAGCAGGCGATGACAACACTGGAGGCAGTGGCTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGTAGATCCAGCAGGCGATGACAACACTGGAGGCAGTGGCTCA  600

seq1  GGCATAGCGGGGAGGGTTCAGAAGTTGGGCAAGTGTCTGTATTCATTCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCGGGGAGGGTTCAGAAGTTGGGCAAGTGTCTGTATTCATTCAA  650

seq1  ATTAAGTGAATTC  660
      |||||||||||||
seq2  ATTAAGTGAATTC  663

seq1: chr2_84757678_84757917
seq2: B6Ng01-073G05.g_74_313

seq1  TCTTGATTCACACTGGGGTGGGTGCTACCATGACCCTCAACTTAGGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTCACACTGGGGTGGGTGCTACCATGACCCTCAACTTAGGTAAT  50

seq1  GTGTCCCTGGCATATACACTGCAGACCCATGGTTCAAACATGGACAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTGGCATATACACTGCAGACCCATGGTTCAAACATGGACAGTTT  100

seq1  GGCTCCCAGCACCATGTTGTCCATCTTCAAGACTCCACCATAGGGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAGCACCATGTTGTCCATCTTCAAGACTCCACCATAGGGGGCTA  150

seq1  GGGTGATAATGTGGATGCACAGGCTCCTGACAAAGCAGCAGGACTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATAATGTGGATGCACAGGCTCCTGACAAAGCAGCAGGACTAATAT  200

seq1  GGTGGGCAGTTGTTCCCTCCTCCTCCTCCTCCTCCTCCTC  240
      |||||||||||||||||||||||||||||||||||||| |
seq2  GGTGGGCAGTTGTTCCCTCCTCCTCCTCCTCCTCCTCCAC  240