BAC Information

Click to search

BAC

Clone NameB6Ng01-074F24
Chromosome2 (Build37)
Map Location 178,806,972 - 178,949,059
singlet/doubletdoublet
Overlap geneLOC100043168
Upstream gene2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264
Downstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074F24.bB6Ng01-074F24.g
ACCDH891243DH891244
length721171
definitionDH891243|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F24, 5' end.DH891244|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,948,339 - 178,949,059)(178,806,972 - 178,807,143)
sequence
gaattcagtcctcgaaccaatgtggttaaagcagggtggggtggtgcctg
cttatcaccacagtcctggcttcactggccagccatcctggcctgtacca
caagctccaggcttttataaaacgatggacagctcctgaggcattatagc
tagggctgaccttcagtctccatgcacatggacagatacaaacacacatg
ccccacctccccaacacactcaggaggcaattgtaaatgaaccagtgagg
ctgcaaagagatcgggaagggggttcaggtaaaaagataagtgagcaaca
gcggttagggtcatgtgcggctcataggagcagaaggctggcataagcag
ggtgtgatggagattacggggcttagtaaggaggggagaagacaatggtg
gctgctgcatcatgaaacaggatttggccttgatttatcaggggtctgct
ttctcaacgtcctgcctaacttttggcattggtgtagctgaggtcactga
agtccgctcagaagaggtacctgtgagggaaagaacttgctgataggttt
ggctggaggcagacaacgcatcgtaccatccagaaatttctaacatttgc
atcagagaaatctgctcacacacatttgagctgtgtgtgcaacgtggtca
tgtatgtacatgtgtctgtgtgtatgcatgtgtgcctacgtggatgtgtg
tgtgtgtgtgtgtgtgtttgc
aaatagatgggcagaaagaagcaaagggtagaagtgggggttgggatgaa
ctcccactgtgagaaatcatgtggagaggtacactgtgtcacaatgacct
ggggaatgagggaagaggggaatgtaatcatctgtggatacttgttgggt
tggagaggcccagaccagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178948339_178949059
seq2: B6Ng01-074F24.b_48_768 (reverse)

seq1  GCAAACACACACACACACACACACACATCCACGTAGGCACACATGCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACACACACACACACACACACATCCACGTAGGCACACATGCATAC  50

seq1  ACACAGACACATGTACATACATGACCACGTTGCACACACAGCTCAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACATGTACATACATGACCACGTTGCACACACAGCTCAAATGT  100

seq1  GTGTGAGCAGATTTCTCTGATGCAAATGTTAGAAATTTCTGGATGGTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCAGATTTCTCTGATGCAAATGTTAGAAATTTCTGGATGGTACG  150

seq1  ATGCGTTGTCTGCCTCCAGCCAAACCTATCAGCAAGTTCTTTCCCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTGTCTGCCTCCAGCCAAACCTATCAGCAAGTTCTTTCCCTCACA  200

seq1  GGTACCTCTTCTGAGCGGACTTCAGTGACCTCAGCTACACCAATGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTCTTCTGAGCGGACTTCAGTGACCTCAGCTACACCAATGCCAAA  250

seq1  AGTTAGGCAGGACGTTGAGAAAGCAGACCCCTGATAAATCAAGGCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCAGGACGTTGAGAAAGCAGACCCCTGATAAATCAAGGCCAAAT  300

seq1  CCTGTTTCATGATGCAGCAGCCACCATTGTCTTCTCCCCTCCTTACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCATGATGCAGCAGCCACCATTGTCTTCTCCCCTCCTTACTAAG  350

seq1  CCCCGTAATCTCCATCACACCCTGCTTATGCCAGCCTTCTGCTCCTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTAATCTCCATCACACCCTGCTTATGCCAGCCTTCTGCTCCTATGA  400

seq1  GCCGCACATGACCCTAACCGCTGTTGCTCACTTATCTTTTTACCTGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCACATGACCCTAACCGCTGTTGCTCACTTATCTTTTTACCTGAACC  450

seq1  CCCTTCCCGATCTCTTTGCAGCCTCACTGGTTCATTTACAATTGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCGATCTCTTTGCAGCCTCACTGGTTCATTTACAATTGCCTCCT  500

seq1  GAGTGTGTTGGGGAGGTGGGGCATGTGTGTTTGTATCTGTCCATGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTTGGGGAGGTGGGGCATGTGTGTTTGTATCTGTCCATGTGCAT  550

seq1  GGAGACTGAAGGTCAGCCCTAGCTATAATGCCTCAGGAGCTGTCCATCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGAAGGTCAGCCCTAGCTATAATGCCTCAGGAGCTGTCCATCGT  600

seq1  TTTATAAAAGCCTGGAGCTTGTGGTACAGGCCAGGATGGCTGGCCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAGCCTGGAGCTTGTGGTACAGGCCAGGATGGCTGGCCAGTGA  650

seq1  AGCCAGGACTGTGGTGATAAGCAGGCACCACCCCACCCTGCTTTAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTGTGGTGATAAGCAGGCACCACCCCACCCTGCTTTAACCAC  700

seq1  ATTGGTTCGAGGACTGAATTC  721
      |||||||||||||||||||||
seq2  ATTGGTTCGAGGACTGAATTC  721

seq1: chr2_178806972_178807143
seq2: B6Ng01-074F24.g_74_244

seq1  AAATAGATGGGCAGAAAGAAGCAAAGGGTAGAAGTGGGGGTTGGGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGGGCAGAAAGAAGCAAAGGGTAGAAGTGGGGGTTGGGATGAA  50

seq1  CCCCCACTGTGAGAAAACATGGGGAGAGGTACACAGTGTCAGAATGACCT  100
      | |||||||||||||| |||| |||||||||||| |||||| ||||||||
seq2  CTCCCACTGTGAGAAATCATGTGGAGAGGTACACTGTGTCACAATGACCT  100

seq1  GGGGAATGAGGGAAGAGGGGAATGTAATCAGCTGTGCAGACAAGGAGGGG  150
      |||||||||||||||||||||||||||||| ||||| | ||   |  |||
seq2  GGGGAATGAGGGAAGAGGGGAATGTAATCATCTGTGGATAC-TTGTTGGG  149

seq1  CTGGAGTGGCCCAGACCAGAAC  172
       ||||| |||||||||||||||
seq2  TTGGAGAGGCCCAGACCAGAAC  171