BAC Information

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BAC

Clone NameB6Ng01-075J08
Chromosome2 (Build37)
Map Location 180,147,553 - 180,352,841
singlet/doubletdoublet
Overlap geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075J08.bB6Ng01-075J08.g
ACCDH892103DH892104
length1,163827
definitionDH892103|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J08, 5' end.DH892104|Mus musculus domesticus DNA, BAC clone: B6Ng01-075J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,147,553 - 180,148,721)(180,352,020 - 180,352,841)
sequence
gaattcctaggtcatataaccacaaataaactaggtaaatggaagattcc
aggactagggtaaaccaggcaccccaaccttctccctgacagttgcagag
tatgacaggtgacttccacaggctcccagccagcaatgatcctgtggcac
cctgatctctccccttccacttccatcctgcctccctgcggtgtctctgt
ccctttgctgttactgtcccagtcacttctctctctatccctcgccctct
ttctgtgtctgactttctctacctctggatttcccgagatgcttaccaga
gaccccaagagtgtgaagcccatcttcactgagcacctgtgctcactgga
gcacactcagcatcttatgtgcatcttacctgtattcactgtcttcgacc
ttaggggctaactcctatgtcttggccaagctgggtgtggagaacaaaag
cccttggaacttgcattgctccctctgggagctttttcagcatggcctct
caccatttctcctcccttacagtagaatcttggtgcccgaggggccttgg
gcagcctttgtcccagacccaccaggtttgctggagagaaaaggcataag
gacttaggttccattaaagtggagacatttctccttaatggctgcctttc
acctgctcttgcagagatttacaggcaaatgtgtcttgggcagagccatc
tacatggaggggaaggggctactgtgcagagatctgcattccctagctct
ggggacagccacagactctgttggctcagtaccagtgcatacttccaggt
aggcttcaaccttcttggggcatgcaagtggcaaaggggatgttctgtag
ccctggccacaggcctgtggatacacactgtatggttgcctgaccccata
cttagacatgttcccacctgaacacaaagttccccgtctggaggaagctc
ctgggccggagtccatggccaagtgatagtaaaggctatggatttcttac
cttgaatcaaggcctcagtggtagcttctaggtcatcacatgacttttcc
tggggtaatatgatagatgtctgtttaccatggatagggtaccattgaaa
gacccagaccaaaatccttctcaccttgaactctgtgagctgtgagttgc
atgagtgaggggt
gaattcagatgtccctttggaaatcctatacatcttttttgtttgtttgt
tttgtttttcgagacagggtttctctgtgtagtcccagctgtcctggaac
tcactctgtagtccaggctggcctcaaactcagaaacctgcctgcctctg
cctcccaagtgctgggattaaaggcgtgtgccaccacgcccggctgccac
tgcctggtcctatacatcttttaaaatggtagtcactcacatgataccag
atggcacaggctgcctacaaaggccatactctggaggagtggcagagaaa
acagtcattggaaagttgatttgggacagacactgcactgagacaagatg
aattcttcatgttttctctctagtgttgaaattcctcaatttccaaggat
tttaagaacaggtggaaatgatgtgcaaattatatcaagtccatctgcat
accagagtttttaaggctaaccttgaagatgacgatagactcagagaatc
gcttcccatacagattcttttcttaaagctacttttgggaaggaggacgc
tattggccaatcagtcagcaccaagtggaatcggggagggggggtttcaa
acttgtcaccagggcaacataaggcaaatacatgaattccaatgggcttt
ggaaaaggctggtggccatcagttcacacagtagggcattacaaccccag
cttgttgtctgatgctccagctgtcttccaaccagctgtccacagcttgc
tccaatagctgtgacatcagcaggcaagaaataaggtctgatctattcac
accatcttttgttttgttttgttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180147553_180148721
seq2: B6Ng01-075J08.b_46_1208

seq1  GAATTCCTAGGTCATATAACCACAAATAAACTAGGTAAATGGAAGATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTCATATAACCACAAATAAACTAGGTAAATGGAAGATTCC  50

seq1  AGGACTAGGGTAAACCAGGCACCCCAACCTTCTCCCTGACAGTTGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGGTAAACCAGGCACCCCAACCTTCTCCCTGACAGTTGCAGAG  100

seq1  TATGACAGGTGACTTCCACAGGCTCCCAGCCAGCAATGATCCTGTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGGTGACTTCCACAGGCTCCCAGCCAGCAATGATCCTGTGGCAC  150

seq1  CCTGATCTCTCCCCTTCCACTTCCATCCTGCCTCCCTGCGGTGTCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTCTCCCCTTCCACTTCCATCCTGCCTCCCTGCGGTGTCTCTGT  200

seq1  CCCTTTGCTGTTACTGTCCCAGTCACTTCTCTCTCTATCCCTCGCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTGTTACTGTCCCAGTCACTTCTCTCTCTATCCCTCGCCCTCT  250

seq1  TTCTGTGTCTGACTTTCTCTACCTCTGGATTTCCCGAGATGCTTACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCTGACTTTCTCTACCTCTGGATTTCCCGAGATGCTTACCAGA  300

seq1  GACCCCAAGAGTGTGAAGCCCATCTTCACTGAGCACCTGTGCTCACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAGAGTGTGAAGCCCATCTTCACTGAGCACCTGTGCTCACTGGA  350

seq1  GCACACTCAGCATCTTATGTGCATCTTACCTGTATTCACTGTCTTCGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCAGCATCTTATGTGCATCTTACCTGTATTCACTGTCTTCGACC  400

seq1  TTAGGGGCTAACTCCTATGTCTTGGCCAAGCTGGGTGTGGAGAACAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTAACTCCTATGTCTTGGCCAAGCTGGGTGTGGAGAACAAAAG  450

seq1  CCCTTGGAACTTGCATTGCTCCCTCTGGGAGCTTTTTCAGCATGGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGAACTTGCATTGCTCCCTCTGGGAGCTTTTTCAGCATGGCCTCT  500

seq1  CACCATTTCTCCTCCCTTACAGTAGAATCTTGGTGCCCGAGGGGCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCTCCTCCCTTACAGTAGAATCTTGGTGCCCGAGGGGCCTTGG  550

seq1  GCAGCCTTTGTCCCAGACCCACCAGGTTTGCTGGAGAGAAAAGGCATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTTGTCCCAGACCCACCAGGTTTGCTGGAGAGAAAAGGCATAAG  600

seq1  GACTTAGGTTCCATTAAAGTGGAGACATTTCTCCTTAATGGCTGCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGTTCCATTAAAGTGGAGACATTTCTCCTTAATGGCTGCCTTTC  650

seq1  ACCTGCTCTTGCAGAGATTTACAGGCAAATGTGTCTTGGGCAGAAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTGCTCTTGCAGAGATTTACAGGCAAATGTGTCTTGGGCAG-AGCCAT  699

seq1  CTACATGGAGGGGAAGGGGCTACTGTGCAGAGATCTGCATTCCCTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGAGGGGAAGGGGCTACTGTGCAGAGATCTGCATTCCCTAGCTC  749

seq1  TGGGGACAGCCACAGACTCTGTTGGCTCAGTACCAGTGCATACTTCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGCCACAGACTCTGTTGGCTCAGTACCAGTGCATACTTCCAGG  799

seq1  TAGGCTTCAACCTTCTTGGGGCATGCAAGTGGCAAAAGGGGATGTTCTGT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGGCTTCAACCTTCTTGGGGCATGCAAGTGGC-AAAGGGGATGTTCTGT  848

seq1  AGCCCTGGCCACAGGCCTGTGGATACACACTGTATGGTTGCCTGACCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCCACAGGCCTGTGGATACACACTGTATGGTTGCCTGACCCCA  898

seq1  TACTTAGACATGTTCCCACCTGAACACAAAGTTCCCCGTCTGGAGGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGACATGTTCCCACCTGAACACAAAGTTCCCCGTCTGGAGGAAGC  948

seq1  TCCTGGGCCGGAGTCCATGGCCAAGTGATAGT-AAGGCTATGGATTTCTT  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCTGGGCCGGAGTCCATGGCCAAGTGATAGTAAAGGCTATGGATTTCTT  998

seq1  ACCTTGAATCAAGGCCTCAGTTGTAGCTTCTAGGTCATCACATGACTTTT  1049
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCTTGAATCAAGGCCTCAGTGGTAGCTTCTAGGTCATCACATGACTTTT  1048

seq1  CCTGGGGTAATATGAATAGATGTCTGTTTACCATGGATAGGGTACCAATG  1099
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  CCTGGGGTAATATG-ATAGATGTCTGTTTACCATGGATAGGGTACCATTG  1097

seq1  ACAGACCCAAGACAAAAATCCCTCCCCAACCTGAACTCTGTGAGCTTGTT  1149
      | |||||| |||| ||||| ||| | || | |||||||||||||||   |
seq2  AAAGACCC-AGACCAAAAT-CCTTCTCACCTTGAACTCTGTGAGCT--GT  1143

seq1  GAGTTGCATGAGTGAGGGGT  1169
      ||||||||||||||||||||
seq2  GAGTTGCATGAGTGAGGGGT  1163

seq1: chr2_180352020_180352841
seq2: B6Ng01-075J08.g_68_887 (reverse)

seq1  AAAACAAAAACAAAAAGATGGTGTGAATTAGATCAGACCTTATTTCTTGC  50
      |||||||||   ||||||||||||||| ||||||||||||||||||||||
seq2  AAAACAAAA--CAAAAGATGGTGTGAA-TAGATCAGACCTTATTTCTTGC  47

seq1  CTGCTGATGTCACAGCTATTGGAGCAAGCTGTGGACAGCTGGTTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATGTCACAGCTATTGGAGCAAGCTGTGGACAGCTGGTTGGAAGA  97

seq1  CAGCTGGAGCATCAGAC-ACAAGCTGGGGTTGTAATGCCCTACTGTGTGA  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGCTGGAGCATCAGACAACAAGCTGGGGTTGTAATGCCCTACTGTGTGA  147

seq1  ACTGATGGCCACCAGCCTTTTCCAAAGCCCATTGGAATTCATGTATTTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGCCACCAGCCTTTTCCAAAGCCCATTGGAATTCATGTATTTGC  197

seq1  CTTATGTTGCCCTGGTGACAAGTTTGAAACCCCCCCTCCCCGATTCCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTGCCCTGGTGACAAGTTTGAAACCCCCCCTCCCCGATTCCACT  247

seq1  TGGTGCTGACTGATTGGCCAATAGCGTCCTCCTTCCCAAAAGTAGCTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGACTGATTGGCCAATAGCGTCCTCCTTCCCAAAAGTAGCTTTA  297

seq1  AGAAAAGAATCTGTATGGGAAGCGATTCTCTGAGTCTATCGTCATCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATCTGTATGGGAAGCGATTCTCTGAGTCTATCGTCATCTTCA  347

seq1  AGGTTAGCCTTAAAAACTCTGGTATGCAGATGGACTTGATATAATTTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCCTTAAAAACTCTGGTATGCAGATGGACTTGATATAATTTGCA  397

seq1  CATCATTTCCACCTGTTCTTAAAATCCTTGGAAATTGAGGAATTTCAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTCCACCTGTTCTTAAAATCCTTGGAAATTGAGGAATTTCAACA  447

seq1  CTAGAGAGAAAACATGAAGAATTCATCTTGTCTCAGTGCAGTGTCTGTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGAAAACATGAAGAATTCATCTTGTCTCAGTGCAGTGTCTGTCC  497

seq1  CAAATCAACTTTCCAATGACTGTTTTCTCTGCCACTCCTCCAGAGTATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAACTTTCCAATGACTGTTTTCTCTGCCACTCCTCCAGAGTATGG  547

seq1  CCTTTGTAGGCAGCCTGTGCCATCTGGTATCATGTGAGTGACTACCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAGGCAGCCTGTGCCATCTGGTATCATGTGAGTGACTACCATTT  597

seq1  TAAAAGATGTATAGGACCAGGCAGTGGCAGCCGGGCGTGGTGGCACACGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATGTATAGGACCAGGCAGTGGCAGCCGGGCGTGGTGGCACACGC  647

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGGTTTCTGAGTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGGTTTCTGAGTTTGA  697

seq1  GGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCTGGGACTACACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCTGGGACTACACAGA  747

seq1  GAAACCCTGTCTCGAAAAACAAAACAAACAAACAAAAAAGATGTATAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAACAAAACAAACAAACAAAAAAGATGTATAGGA  797

seq1  TTTCCAAAGGGACATCTGAATTC  822
      |||||||||||||||||||||||
seq2  TTTCCAAAGGGACATCTGAATTC  820