BAC Information

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BAC

Clone NameB6Ng01-076C19
Chromosome2 (Build37)Y (Build37)
Map Location 86,213,487 - 86,214,6611,870,346 - 1,870,421
singlet/doubletsingletsinglet
Overlap geneOlfr1057, GA_x5J8B7TRQ4E-1174-939
Upstream geneGA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056
Downstream geneOlfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C19.bB6Ng01-076C19.g
ACCDH892519DH892520
length1,184630
definitionDH892519|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C19, 5' end.DH892520|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,213,487 - 86,214,661)(1,870,346 - 1,870,421)
sequence
gaattcctaaaaaatccatgcaaacgattcaatcttatatgaattttaac
cataatttttttatttaaagatttcctttccttctttttttaaaaaaggc
actgttcttcaaagatattgttggtaaatgtcaggacctaaaacttcaga
agcaattggatttactgttttgtcgttgttgttgttgttgttttatccca
tattttttacccaaaggagaaaaataataagttaatttacaagttaacaa
ttttatttaaaagacagaatacaatttactgcaagggcagccagggggct
taagttatggattatggtacagttattgcatcacgagcacaaaatgctga
gtccaagtcttactatgaaaatgtcataattgataaacaagggaatgctt
caacacagactggaggttttcaagaatcatttcttaggaatatcaataat
cagacattctagcaacagacgggttctgaacaattattatagatagttaa
atccttcaggttttttgcaaaatatcattcattcatctaactcttaatat
ttgagtatgcatttattttattcttaatgatatactatgtaacaaaaatt
attatttttcagaaaaagataaatattgaaataagtgttcagtacaccca
ggtattggatatgtgaaaagccaaatgaaatcaatctcatgaaaaaaatt
atgtgtattgcttttgggttttttgtttgtttatttttatattggttatt
ttatttatttatgtttcaaatttcccccttcctggtttcccctttgcaaa
accccatattattacccatccctccttcttatttgatgatgctccactac
ccacacttccattcctgccgcaccaagctagcatccctctaatctggggc
accaagcctccacaggaacaagggcctcccatcccattaatgccagataa
agcaatcctacatatgcagcagagccatgggtccctccatgtttactcct
tggttagtggtttactccactggaagctttgagaaattcagttatttgga
tattgctgtcttccttggtgggcttatcaatcacttcttggtcctcagtc
cctccttactccttccattggggcaccatgtcagccctgaatgaattgct
gcaagcacccttgcatctgtatttgggttcaggc
gaattctttgtttaactctgagccccattttttaatggggttatttgatt
ttctggtgtccactttcttgagttctttatatatattggatattagtccc
ctatctgatttagaattggtaaagatcctttcccaatctgttggtggcct
tttttgtcttattgaaggtatcttttgccttacagaaggtttgtaatttt
atgaggtcccatttgttgattctcaaccatctaaagactgacatacccgg
ggttccatcccataatcagcctccaaaccctgacaccattgcatacacca
gcaagattttgctgaaaggaccctgatatagctgtctcttgtgaggctat
gccaggcctagcaaacacagaagtggatgctcacagtcagctatcagatg
gaacacaggtcccccaatggaggagctagagaaagtacccaaggagctaa
ggggtctgcaaccttgtaggtggaacaacaatgtgaactaatcattaccc
tggagctcatgtctctagttgcatatgtatcagaagatggcctagtcggc
catcactgggaagagaagccccttggtcttacaaactttatatgcctcag
tacaggggaatgccagggctaagaatcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86213487_86214661
seq2: B6Ng01-076C19.b_46_1229 (reverse)

seq1  GCCTGA---CAAATACAGATGCA--GGTGCTTGCAGCCAATCA-TCA-GG  43
      ||||||   ||||||||||||||  |||||||||||| | ||| ||| ||
seq2  GCCTGAACCCAAATACAGATGCAAGGGTGCTTGCAGCAATTCATTCAGGG  50

seq1  CTGAACATGGTGCCCCCAATGGAA-GAGTTAGGA-GGACTGAAGGACCAG  91
      ||| |||||||| ||||||||||| |||| |||| |||||| ||||||| 
seq2  CTG-ACATGGTG-CCCCAATGGAAGGAGTAAGGAGGGACTG-AGGACCAA  97

seq1  AAAGTGATTGAT-AGCCCAC--AGGAAGAACAGCAATAT-CAAATAACTG  137
       ||||||||||| |||||||  |||||| |||||||||| ||||||||||
seq2  GAAGTGATTGATAAGCCCACCAAGGAAG-ACAGCAATATCCAAATAACTG  146

seq1  AATTTCTCAAAGCTTCCAGT-GAGTAAACCACTAACCAAGGAGTAAACAT  186
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTTCTCAAAGCTTCCAGTGGAGTAAACCACTAACCAAGGAGTAAACAT  196

seq1  GGAGGGACCCATGGCTCCTGCTGCATATGTAGGATTGCTTTATCTGGCAT  236
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAGGGACCCATGGCT-CTGCTGCATATGTAGGATTGCTTTATCTGGCAT  245

seq1  TAATGGGATGGGAGGCCCTTGTTCCTGTGGAGGCTTGGTGCCCCAGATTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATGGGAGGCCCTTGTTCCTGTGGAGGCTTGGTGCCCCAGATTA  295

seq1  GAGGGATGCTAGCTTGGTGCGGCAGGAATGGAAGTGTGGGTAGTGGAGCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCTAGCTTGGTGCGGCAGGAATGGAAGTGTGGGTAGTGGAGCA  345

seq1  TCATCAAATAAGAAGGAGGGATGGGTAATAATATGGGGTTTTGCAAAGGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAATAAGAAGGAGGGATGGGTAATAATATGGGGTTTTGCAAAGGG  395

seq1  GAAACCAGGAAGGGGGAAATTTGAAACATAAATAAATAAAATAACCAATA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGGAAGGGGGAAATTTGAAACATAAATAAATAAAATAACCAATA  445

seq1  TAAAAATAAACAAACAAAAAACCCAAAAGCAATACACATAATTTTTTTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAACAAACAAAAAACCCAAAAGCAATACACATAATTTTTTTCA  495

seq1  TGAGATTGATTTCATTTGGCTTTTCACATATCCAATACCTGGGTGTACTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGATTTCATTTGGCTTTTCACATATCCAATACCTGGGTGTACTG  545

seq1  AACACTTATTTCAATATTTATCTTTTTCTGAAAAATAATAATTTTTGTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTATTTCAATATTTATCTTTTTCTGAAAAATAATAATTTTTGTTA  595

seq1  CATAGTATATCATTAAGAATAAAATAAATGCATACTCAAATATTAAGAGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATATCATTAAGAATAAAATAAATGCATACTCAAATATTAAGAGT  645

seq1  TAGATGAATGAATGATATTTTGCAAAAAACCTGAAGGATTTAACTATCTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATGAATGATATTTTGCAAAAAACCTGAAGGATTTAACTATCTA  695

seq1  TAATAATTGTTCAGAACCCGTCTGTTGCTAGAATGTCTGATTATTGATAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTGTTCAGAACCCGTCTGTTGCTAGAATGTCTGATTATTGATAT  745

seq1  TCCTAAGAAATGATTCTTGAAAACCTCCAGTCTGTGTTGAAGCATTCCCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAAATGATTCTTGAAAACCTCCAGTCTGTGTTGAAGCATTCCCT  795

seq1  TGTTTATCAATTATGACATTTTCATAGTAAGACTTGGACTCAGCATTTTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCAATTATGACATTTTCATAGTAAGACTTGGACTCAGCATTTTG  845

seq1  TGCTCGTGATGCAATAACTGTACCATAATCCATAACTTAAGCCCCCTGGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTGATGCAATAACTGTACCATAATCCATAACTTAAGCCCCCTGGC  895

seq1  TGCCCTTGCAGTAAATTGTATTCTGTCTTTTAAATAAAATTGTTAACTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGCAGTAAATTGTATTCTGTCTTTTAAATAAAATTGTTAACTTG  945

seq1  TAAATTAACTTATTATTTTTCTCCTTTGGGTAAAAAATATGGGATAAAAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTTATTATTTTTCTCCTTTGGGTAAAAAATATGGGATAAAAC  995

seq1  AACAACAACAACAACGACAAAACAGTAAATCCAATTGCTTCTGAAGTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACGACAAAACAGTAAATCCAATTGCTTCTGAAGTTTT  1045

seq1  AGGTCCTGACATTTACCAACAATATCTTTGAAGAACAGTGCCTTTTTTAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGACATTTACCAACAATATCTTTGAAGAACAGTGCCTTTTTTAA  1095

seq1  AAAAAGAAGGAAAGGAAATCTTTAAATAAAAAAATTATGGTTAAAATTCA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGAAAGGAAATCTTTAAATAAAAAAATTATGGTTAAAATTCA  1145

seq1  TATAAGATTGAATCGTTTGCATGGATTTTTTAGGAATTC  1175
      |||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTGAATCGTTTGCATGGATTTTTTAGGAATTC  1184

seq1: chrY_1870346_1870421
seq2: B6Ng01-076C19.g_494_568

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||| ||||| ||||||||| | ||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCT-AAGGGGTCTGCAACCTTGTAGGTGGA  49

seq1  ACAACATTATGAACTAACCATTACCC  76
      |||||| | |||||||| ||||||||
seq2  ACAACAATGTGAACTAATCATTACCC  75