BAC Information

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BAC

Clone NameB6Ng01-076H01
Chromosome2 (Build37)
Map Location 47,108,841 - 47,110,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076H01.bB6Ng01-076H01.g
ACCDH892705DH892706
length1,2281,163
definitionDH892705|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H01, 5' end.DH892706|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggcttcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatgt
gatagtatatataagtgaccccaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaaaaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggca
tgactctaactaaggaagtgaaagatctgtatgataaaacttcaagtctc
tgaagaaagaaattaaagaagatctcagaagatggaaggatctcccatgc
tcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaatttttca
acgaattagaagaagcaatttgcaaattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacataaagctttactacagagcaattgtgataaaaactgcat
ggtactggtatagagacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
taaaaccatccagtggaagaaagacagcattttcaacaattggtgctggc
acaactggttgttatcatgtagaagaatgcgaatcgatccatacttatct
cttgtactaaggtcaaatctagtggatcaggacttcacttaaaacagaga
cactgaaacttatagaggagaagtgggaaaagcttgaagatatgggcaca
ggaaaatctgaacagacagcaatgctggtgctgtagatcgagaaattgac
aatgcaatctaatgactcaatgttttctgcaaggcaaagaacccggtcat
agacaaaagagctcccacacattatttg
gaattccttcatcccaggagtagaaaataaaatcatctatatggtcttgt
gtatgacctagaggttaagcatttgctcagcatatacaggaacctacatt
gaatgcttaataggacacaaaggcaaatgaaaaagtaattattttaattc
taatgatgttattttgattactcagaataaagatatgattgtcatttgtt
ttaaatttaatccctttctttctgttttaaaccttcatgtgaattttgga
gaacaaagaatttgagatattgttaattctactggatctgcagagacaca
acctggaaggagattgtagaccgatgactaatttgacctgattgcttctt
acattaagtaatctgaaaattaatttattgtgggggagtatttaagtaaa
ctttacttgcaacccaaagaattctggcatagctttgaaaggacagtttt
ttgttttttgttttttgttttttttttttattagtacacagtgcaggtta
gcactattttaagatcaattcagtaaattctatattttaaatgcaatgag
ggctgttagcatcagtttcaattaaaactgttgagatgattagacttgat
gcagtgtaatagtttatttcattttgggatttataataatgtagtcagta
attaacaagtaagctttacatttctaaaattgattataaagttattagga
caactgaggaattactgatatttatctgttgagactattttgaataaatg
ttctgagtgaaatttgaaatactagtatattgttgaagtctacattgaca
taaataatgtaattatagttagctgtacatagtatctcttactttgtaat
tactgataaatttagtttacttatatgtgcatctatctatctatctatct
atctatctatctatctatctatctctattatagaaaatcgtgtctttccc
aggagcttactgattgaagagtataaaagatttttttttattatcattcc
tttcatttacacttcaaatgaatatcccactttctgttacccctccacca
cacccatcccacatcttgccctcccctcctttgcctgtatggaaggatca
cccatatacccaactctccaccctgatgctcagaattccctacttggcat
cacgtctggacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47108841_47110022
seq2: B6Ng01-076H01.g_66_1228 (reverse)

seq1  TGGTCCAGGAGACGTTTGATGCCCCAGAGTAGGGGGATACTGGAGCATCA  50
      ||||||   |||||  |||||||    |||| ||| || || ||||||||
seq2  TGGTCC---AGACG--TGATGCC---AAGTA-GGGAATTCT-GAGCATCA  40

seq1  GGGTGGGAGAGTGTGGGTATATGGGTGATCACTTTCATACAGGCAAAAGG  100
      |||| ||||||| ||||||||||||||||| ||| ||||||||||||  |
seq2  GGGT-GGAGAGT-TGGGTATATGGGTGATC-CTTCCATACAGGCAAA--G  85

seq1  GAGGGGAGGGC-AGATGTGGGATGGGGTGTTGGTGGAGGGGTAAACAGAA  149
      ||||||||||| ||||||||||| ||||| |||||||||||| |||||||
seq2  GAGGGGAGGGCAAGATGTGGGAT-GGGTG-TGGTGGAGGGGT-AACAGAA  132

seq1  AGTGGGATA-TCATTTGAAGTGTAAATGAAAGGAATGATTAATTAAAAAA  198
      ||||||||| |||||||||||||||||||||||||||||  | |||||||
seq2  AGTGGGATATTCATTTGAAGTGTAAATGAAAGGAATGAT--AATAAAAAA  180

seq1  AAATCTTTTATACTCTTCAATCAGTAAGCTCCTGGGAAAGACACGATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTATACTCTTCAATCAGTAAGCTCCTGGGAAAGACACGATTTT  230

seq1  CTATAAATAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAT-AATAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  279

seq1  AGATGCACATATAAGTAAACTAAATTTATCAGTAATTACAAAGTAAGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACATATAAGTAAACTAAATTTATCAGTAATTACAAAGTAAGAGA  329

seq1  TACTATGTACAGCTAACTATAATTACATTATTTATGTCAATGTAGACTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTACAGCTAACTATAATTACATTATTTATGTCAATGTAGACTTC  379

seq1  AACAATATACTAGTATTTCAAATTTCACTCAGAACATTTATTCAAAATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATACTAGTATTTCAAATTTCACTCAGAACATTTATTCAAAATAG  429

seq1  TCTCAACAGATAAATATCAGTAATTCCTCAGTTGTCCTAATAACTTTATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGATAAATATCAGTAATTCCTCAGTTGTCCTAATAACTTTATA  479

seq1  ATCAATTTTAGAAATGTAAAGCTTACTTGTTAATTACTGACTACATTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTAGAAATGTAAAGCTTACTTGTTAATTACTGACTACATTATT  529

seq1  ATAAATCCCAAAATGAAATAAACTATTACACTGCATCAAGTCTAATCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCCAAAATGAAATAAACTATTACACTGCATCAAGTCTAATCATC  579

seq1  TCAACAGTTTTAATTGAAACTGATGCTAACAGCCCTCATTGCATTTAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTTTAATTGAAACTGATGCTAACAGCCCTCATTGCATTTAAAA  629

seq1  TATAGAATTTACTGAATTGATCTTAAAATAGTGCTAACCTGCACTGTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATTTACTGAATTGATCTTAAAATAGTGCTAACCTGCACTGTGTA  679

seq1  CTAATAAAAAAAAAAAACAAAAAACAAAAAACAAAAAACTGTCCTTTCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAAAAAAACAAAAAACAAAAAACAAAAAACTGTCCTTTCAA  729

seq1  AGCTATGCCAGAATTCTTTGGGTTGCAAGTAAAGTTTACTTAAATACTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCCAGAATTCTTTGGGTTGCAAGTAAAGTTTACTTAAATACTCC  779

seq1  CCCACAATAAATTAATTTTCAGATTACTTAATGTAAGAAGCAATCAGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATAAATTAATTTTCAGATTACTTAATGTAAGAAGCAATCAGGTC  829

seq1  AAATTAGTCATCGGTCTACAATCTCCTTCCAGGTTGTGTCTCTGCAGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTCATCGGTCTACAATCTCCTTCCAGGTTGTGTCTCTGCAGATC  879

seq1  CAGTAGAATTAACAATATCTCAAATTCTTTGTTCTCCAAAATTCACATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAATTAACAATATCTCAAATTCTTTGTTCTCCAAAATTCACATGA  929

seq1  AGGTTTAAAACAGAAAGAAAGGGATTAAATTTAAAACAAATGACAATCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAAACAGAAAGAAAGGGATTAAATTTAAAACAAATGACAATCAT  979

seq1  ATCTTTATTCTGAGTAATCAAAATAACATCATTAGAATTAAAATAATTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTCTGAGTAATCAAAATAACATCATTAGAATTAAAATAATTAC  1029

seq1  TTTTTCATTTGCCTTTGTGTCCTATTAAGCATTCAATGTAGGTTCCTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTGCCTTTGTGTCCTATTAAGCATTCAATGTAGGTTCCTGTA  1079

seq1  TATGCTGAGCAAATGCTTAACCTCTAGGTCATACACAAGACCATATAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAGCAAATGCTTAACCTCTAGGTCATACACAAGACCATATAGAT  1129

seq1  GATTTTATTTTCTACTCCTGGGATGAAGGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTTCTACTCCTGGGATGAAGGAATTC  1163