BAC Information

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BAC

Clone NameB6Ng01-077G23
Chromosome19 (Build37)2 (Build37)
Map Location 56,628,092 - 56,628,32617,616,027 - 17,617,148
singlet/doubletsingletsinglet
Overlap geneNhlrc2
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
Downstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G23.bB6Ng01-077G23.g
ACCDH893410DH893411
length6471,128
definitionDH893410|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G23, 5' end.DH893411|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,628,092 - 56,628,326)(17,616,027 - 17,617,148)
sequence
gaattcttaacatttattacctaggctgttctaagaatatagtgcagagt
caggtgtggtagcggatgccttcagtcacagctgtcgggaagcagaggcc
agtggatctttgtgggtttgaggccagcttgctctacattgcaggttcca
ggctcagccaggactacacagaccctgtctcaaaacaaaacagaacaaca
caccaaaatcaaaaacaagaacatgacccaaaactccaaaaccaagaaca
aaaccaagaacactcaacaacaaaactaaacaggagagtatagtactgtg
ttactacttatagtaatcacattgcagttgagtgggtagaacttactcat
ctgtgtcacagaaactgcaaccttgactgacatctgcaccccctcccagc
atcccccccccccgcccccgccccaagttttccaatcaaccctgggataa
ccactaaaacatcctcaacctcagcctgtgaatttggcctaggatgtttt
gttttgttttgttttgttttgttttgttttgttttgttttgtttttgaga
tagggtttctctgcatagcctcaaaactcacacaggcagcctgctgctcc
ctccagagtgttggggctaaaggcatatgtgtgtgtgtgtatgtgtg
gaattctcccctggggttttcagcttttgaagcccattcagggtcatggt
taccacatcattcttggtcattgtttatgactgatatcatccaaacaaag
gcttcatgggaatggagagggcagcagagaatgatgtggatggaagggac
catgctttctacccatcagtggccacttctctctctgagaccccctcaga
gaggaatgaggatgatgaccacgagggtgaagttgcaaggatcataaaat
tggcttcttattgaaatagaaacaggggcagtcttatgttattggggcaa
gtgacaacaatgtcctgatttgcactaaacacctgcaaaataggcctgtt
ttcttctagaaaattctaaggtcagaagagatggagagagagacagatca
gcaggtaaaagtggctgtcatgcaagcctgactacctgagtttaaccacc
agataccacagtggaaagagaaaactgattcccaaaacagtcctctgaca
ttcacacatgctatggcatgcacattcccgagcacgcacacacacacaca
cacaaacacacacacacacacacacacacacactaatttgcttaaaaaga
ggtcaatgtatgtatgtaagtaagagagatagttttgggttccatggaac
tcaatatttcagtagccccagaaggtgccttacaggagaaaaagaaatct
tttaagataaataaagatgggccagggagagagctctgtaggtaaagaca
tttgctgcccaagtctgggtatcctgagtttgattcttggaaccaggaga
agatagaaggagagatcgcagtccagaaaagtgtgtcttttggtctccac
acaaatgctgcaacacacacacacacacacacacacacacacacacacaa
gttttttttatttaaaataagtgaaccacccactctgttattcccatgag
tagaggaattacaagtaccctgcaagcaccatgccatttttagatagcta
agagtttgtctgacctcaacaagatgtcaaggtcaaggggggctgaatta
gaaatgatcatgacaatcaaattcctagcgaaggttagtactttggggaa
tactcgttacattctttgaaccttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56628092_56628326
seq2: B6Ng01-077G23.b_195_697

seq1  GTTCCAGG-ACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAA-----  44
      ||||||||  |||||||| ||||||||    ||||||||||||||     
seq2  GTTCCAGGCTCAGCCAGGACTACACAG----ACCCTGTCTCAAAACAAAA  46

seq1  ---AACAAAAAA--AAAATCATA---------------------------  62
         ||||| | |  ||||||| |                           
seq2  CAGAACAACACACCAAAATCAAAAACAAGAACATGACCCAAAACTCCAAA  96

seq1  --------------CAAG-----TAATAAATAAAATGAGACAG-------  86
                    ||||     | |  || ||||  | ||||       
seq2  ACCAAGAACAAAACCAAGAACACTCAACAACAAAACTAAACAGGAGAGTA  146

seq1  -ACTAATAAGTTAGTGCATGTTGTGA----AGTGCTCTT---TGGG--GC  126
       | || |  |||| | | | | || |    | |||  ||   ||||  | 
seq2  TAGTACTGTGTTACTACTTATAGTAATCACATTGCAGTTGAGTGGGTAGA  196

seq1  A-TTCCT-----------AAGAA--TTCAGACTTTTCTTCCAT-TG----  157
      | || ||            ||||  | ||  |||  ||  ||| ||    
seq2  ACTTACTCATCTGTGTCACAGAAACTGCAACCTTGACTGACATCTGCACC  246

seq1  -------AGGA---------------------------------------  161
             || |                                       
seq2  CCCTCCCAGCATCCCCCCCCCCCGCCCCCGCCCCAAGTTTTCCAATCAAC  296

seq1  --TGTGACAA----------------------AG---TTGAAGGTTG---  181
        || || ||                      ||    ||||  | |   
seq2  CCTGGGATAACCACTAAAACATCCTCAACCTCAGCCTGTGAATTTGGCCT  346

seq1  ----TTTTTTGTTTTGTTTTGTTTTGTT---TTTTGTTTTGTGTGTGTGT  224
          | ||||||||||||||||||||||   ||||||||||| | ||| |
seq2  AGGATGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT-TTTGT-T  394

seq1  GTGTATGTGTG---------------------------------------  235
       ||| | || |                                       
seq2  TTGTTTTTGAGATAGGGTTTCTCTGCATAGCCTCAAAACTCACACAGGCA  444

seq1  --------------------------------------------------  235
                                                        
seq2  GCCTGCTGCTCCCTCCAGAGTGTTGGGGCTAAAGGCATATGTGTGTGTGT  494

seq1  ---------  235
               
seq2  GTATGTGTG  503

seq1: chr2_17616027_17617148
seq2: B6Ng01-077G23.g_68_1195

seq1  GAATTCTCCCCTGGGGTTTTCAGCTTTTGAAGCCCATTCAGGGTCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCTGGGGTTTTCAGCTTTTGAAGCCCATTCAGGGTCATGGT  50

seq1  TACCACATCATTCTTGGTCATTGTTTATGACTGATATCATCCAAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATCATTCTTGGTCATTGTTTATGACTGATATCATCCAAACAAAG  100

seq1  GCTTCATGGGAATGGAGAGGGCAGCAGAGAATGATGTGGATGGAAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGGGAATGGAGAGGGCAGCAGAGAATGATGTGGATGGAAGGGAC  150

seq1  CATGCTTTCTACCCATCAGTGGCCACTTCTCTCTCTGAGACCCCCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTCTACCCATCAGTGGCCACTTCTCTCTCTGAGACCCCCTCAGA  200

seq1  GAGGAATGAGGATGATGACCACGAGGGTGAAGTTGCAAGGATCATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGAGGATGATGACCACGAGGGTGAAGTTGCAAGGATCATAAAAT  250

seq1  TGGCTTCTTATTGAAATAGAAACAGGGGCAGTCTTATGTTATTGGGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTATTGAAATAGAAACAGGGGCAGTCTTATGTTATTGGGGCAA  300

seq1  GTGACAACAATGTCCTGATTTGCACTAAACACCTGCAAAATAGGCCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACAATGTCCTGATTTGCACTAAACACCTGCAAAATAGGCCTGTT  350

seq1  TTCTTCTAGAAAATTCTAAGGTCAGAAGAGATGGAGAGAGAGACAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGAAAATTCTAAGGTCAGAAGAGATGGAGAGAGAGACAGATCA  400

seq1  GCAGGTAAAAGTGGCTGTCATGCAAGCCTGACTACCTGAGTTTAACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAAAAGTGGCTGTCATGCAAGCCTGACTACCTGAGTTTAACCACC  450

seq1  AGATACCACAGTGGAAAGAGAAAACTGATTCCCAAAACAGTCCTCTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCACAGTGGAAAGAGAAAACTGATTCCCAAAACAGTCCTCTGACA  500

seq1  TTCACACATGCTATGGCATGCACATTCCCGAGCACGCACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACATGCTATGGCATGCACATTCCCGAGCACGCACACACACACACA  550

seq1  CACAAACACACACACACACACACACACACACACTAATTTGCTTAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACACACACACACACACACACACACACTAATTTGCTTAAAAAGA  600

seq1  GGTCAATGTATGTATGTAAGTAAGAGAGATAG-TTTGGGTTCCATGGAAC  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTCAATGTATGTATGTAAGTAAGAGAGATAGTTTTGGGTTCCATGGAAC  650

seq1  TCAATA-TTCAGTAGCCCCAGAAGGTGCCTTACAGGAG-AAAAGAAATC-  696
      |||||| ||||||||||||||||||||||||||||||| |||||||||| 
seq2  TCAATATTTCAGTAGCCCCAGAAGGTGCCTTACAGGAGAAAAAGAAATCT  700

seq1  TTTAAGATAAATAAAGATGGGCCAGGGAGAGAGCTCTGTAGGTAAAGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATAAATAAAGATGGGCCAGGGAGAGAGCTCTGTAGGTAAAGACA  750

seq1  TTTGCTGCCCAAGTCT-GGTATCCTGAGTTTGATTCCTTGGAACCAGGAG  795
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTTGCTGCCCAAGTCTGGGTATCCTGAGTTTGATT-CTTGGAACCAGGAG  799

seq1  AAGATAGAAGGAGAGATCGCAGTCCAG-AAAGTTGGTC-TTTGGTCTCCA  843
      ||||||||||||||||||||||||||| |||||  ||| |||||||||||
seq2  AAGATAGAAGGAGAGATCGCAGTCCAGAAAAGTGTGTCTTTTGGTCTCCA  849

seq1  CACAAATGCTGCAACACACACACACACACACACACACACACACACACACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCTGCAACACACACACACACACACACACACACACACACACACA  899

seq1  A-TTTTTTTTATTTAAAAATAAGTGAACCACCAACTCTGTATTTCCCATG  942
      | |||||||||||| ||||||||||||||||| |||||||  ||||||||
seq2  AGTTTTTTTTATTT-AAAATAAGTGAACCACCCACTCTGTTATTCCCATG  948

seq1  AGTAGAGGAAATACAAAGTA-CCTGCAAGCAACATGCCAGTTTTAGAATA  991
      |||||||||| ||| ||||| |||||||||| ||||||| |||||| |||
seq2  AGTAGAGGAATTAC-AAGTACCCTGCAAGCACCATGCCATTTTTAG-ATA  996

seq1  GCCAAGAG-TTGTCATGA-CTCAACAAGATGTCAGAGGGCAAGGTGGGGC  1039
      || ||||| ||||| ||| ||||||||||||||| ||| ||||| |||||
seq2  GCTAAGAGTTTGTC-TGACCTCAACAAGATGTCA-AGGTCAAGG-GGGGC  1043

seq1  AG-ATTAGAAATGATCCATGACAA-CAAA-TCCCAGCG-AGGGTAGCACA  1085
       | |||||||||||| |||||||| |||| ||| |||| ||| ||| || 
seq2  TGAATTAGAAATGAT-CATGACAATCAAATTCCTAGCGAAGGTTAGTACT  1092

seq1  TTGTGGAATAACTGTTACATTTCTTTGAACCTTCATG  1122
      ||| ||||||   |||||| |||||||||||||||||
seq2  TTGGGGAATACTCGTTACA-TTCTTTGAACCTTCATG  1128