BAC Information

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BAC

Clone NameB6Ng01-079B17
Chromosome2 (Build37)
Map Location 49,241,607 - 49,345,335
singlet/doubletdoublet
Overlap geneEpc2
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
Downstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B17.bB6Ng01-079B17.g
ACCDH894613DH894614
length1,0631,164
definitionDH894613|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B17, 5' end.DH894614|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,241,607 - 49,242,677)(49,344,168 - 49,345,335)
sequence
gaattccttgtactttgtttctgacatcaattcatgctctttctggagga
ttctcacacgtattgggagatgactttttataagcttttagctatcttat
gaaaagttttcctgaagcaaaaagtatcttttattttgtttgacatcata
acatcagggttaaacaatgaccataaatggtttagttatgagccaagtgc
tagaggaaaaaaaaaatcaaaagaaccatcaaaaccaatccccccttcgc
agctttgtgccctggtcttagaaacagctatgggtgctctctacctgtaa
gaaaacccaatgtgcttgtgaatatgaaccaaagcttcaagcagtttctt
gagtgccatggtaattctcccacttattttcggcctcattggactgcatt
tcccccaggtgtgccatttctgctcatcctgttgacttctttactctcag
atgagaccaccaccctacccttcatgggaattgtcttcctctataaagga
cagagaactcaaagcagtatgccccagcctctgagttatttgagagactt
ggatacgtggcttccttcgctttcctaaagcagtaggtaatgacttaaac
ccaaattactttccaggaaagtcagccaaaaatgcaagccagagtggcag
ctagagaaaaggtgtgggaagcagggatggggaagaacaacagaaaacaa
tgttaccattatagtgagcttttggtctcctgagaggtgcgaagttcttg
aaaccaagtatctgttttctctctctacaacaaatgatgtttcctttgga
agaacacaatgccaaatgagaccacagccacgatgtcaataaaagcatta
tgaaactggaaaggaaccacagatagtgttgtcaagccagcttttgagga
agcaagatgtaaaccattgcatcttagatatcacagaaaagagtcaacca
gattggactgattccccagaatcaaagcccattctaatacctcagactgt
acagtgatagggtcttagagaggcagtcaagtagattagttcttagatgc
tgtatcgagtaca
gaattcaagatgaaaactcaattcaaagataaaaaacaaagatggacatc
ttaggatcaaaggaagataatcataaatatgctgatgtttcaggattacc
taggggactttattacaatttgtatcattaggagggtgtaatccaggggt
agagtacatgccaagcattaacaaaccccagacctaatccccagtgcttt
caaatatacatttccagtcagcatacccgtggacagtcagagagcagagc
ttcagcaggacgtcccctgaacctctgtcttaacaagtaacccaacgtgt
aaaccatgatggcaactctgacaagataggaaacactgacacttgtgtgc
agcatattaacaatacgggaaataaggttttaatcaagaacatgactgca
tgagactgagaatttggaacacaactctggtggcaaggcaagactttgta
aagaagacagaatagcataaggatgaaaaacagagggtagtaaaaatgtt
acaataaagagatcgtcaaatactgctaaaactggaggtggtgaccactt
atgtaccaacattgggaggaattctatagtaaaagagcagtaaaaaaaat
tacaattagaattttattaaacttaagtgcaagatgttttgaatttttct
aaagatatagccctacttgtgaacattaaaaataaattttatttgagtat
ggcaaaccatcctctttttagcggtataataaactgtgttctaaaaaaat
cttatattatataaatattacaagtccaaatattattaaaactcaaagtg
atctccaagctcaaatgaaaatacaaacagatttaaatatctcatgttta
acattctattcaccaaagaatatgaactaaaagcttaaaatctcagacaa
tacagaatattttcagtggctgataatttaaaattacaaagagaaaacat
ccattagcaaacttacgctgaatttgaatgactgcttgggctgtttgaac
ttccctttgtacaagcgattgtaatagttgacgttgcttttctgctcagg
aactggaatgacatgctctcttttttttctctaaatacttgctgcgcctg
aaatagctcgctgttaggtgaattttctgtaatgtaaagaagtatgtaag
tgtgtgttagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49241607_49242677
seq2: B6Ng01-079B17.b_46_1108

seq1  GAATTCCTTGTACTTTGTTTCTGACATCAATTCATGCTCTTTCTGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTACTTTGTTTCTGACATCAATTCATGCTCTTTCTGGAGGA  50

seq1  TTCTCACACGTATTGGGAGATGACTTTTTATAAGCTTTTAGCTATCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACACGTATTGGGAGATGACTTTTTATAAGCTTTTAGCTATCTTAT  100

seq1  GAAAAGTTTTCCTGAAGCAAAAAGTATCTTTTATTTTGTTTGACATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTTCCTGAAGCAAAAAGTATCTTTTATTTTGTTTGACATCATA  150

seq1  ACATCAGGGTTAAACAATGACCATAAATGGTTTAGTTATGAGCCAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGGTTAAACAATGACCATAAATGGTTTAGTTATGAGCCAAGTGC  200

seq1  TAGAGGAAAAAAAAAATCAAAAGAACCATCAAAACCAATCCCCCCTTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAAAAAAAAATCAAAAGAACCATCAAAACCAATCCCCCCTTCGC  250

seq1  AGCTTTGTGCCCTGGTCTTAGAAACAGCTATGGGTGCTCTCTACCTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGCCCTGGTCTTAGAAACAGCTATGGGTGCTCTCTACCTGTAA  300

seq1  GAAAACCCAATGTGCTTGTGAATATGAACCAAAGCTTCAAGCAGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCAATGTGCTTGTGAATATGAACCAAAGCTTCAAGCAGTTTCTT  350

seq1  GAGTGCCATGGTAATTCTCCCACTTATTTTCGGCCTCATTGGACTGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCATGGTAATTCTCCCACTTATTTTCGGCCTCATTGGACTGCATT  400

seq1  TCCCCCAGGTGTGCCATTTCTGCTCATCCTGTTGACTTCTTTACTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGGTGTGCCATTTCTGCTCATCCTGTTGACTTCTTTACTCTCAG  450

seq1  ATGAGACCACCACCCTACCCTTCATGGGAATTGTCTTCCTCTATAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCACCACCCTACCCTTCATGGGAATTGTCTTCCTCTATAAAGGA  500

seq1  CAGAGAACTCAAAGCAGTATGCCCCAGCCTCTGAGTTATTTGAGAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTCAAAGCAGTATGCCCCAGCCTCTGAGTTATTTGAGAGACTT  550

seq1  GGATACGTGGCTTCCTTCGCTTTCCTAAAGCAGTAGGTAATGACTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACGTGGCTTCCTTCGCTTTCCTAAAGCAGTAGGTAATGACTTAAAC  600

seq1  CCAAATTACTTTCCAGGAAAGTCAGCCAAAAATGCAAGCCAGAGTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTACTTTCCAGGAAAGTCAGCCAAAAATGCAAGCCAGAGTGGCAG  650

seq1  CTAGAGAAAAGGTGTGGGAAGCAGGGATGGGGAAGAACAACAGAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAAGGTGTGGGAAGCAGGGATGGGGAAGAACAACAGAAAACAA  700

seq1  TGTTACCATTATAGTGAGCTTTTGGTCTCCTGAGAGGTGCGAAGTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCATTATAGTGAGCTTTTGGTCTCCTGAGAGGTGCGAAGTTCTTG  750

seq1  AAACCAAGTATCTGTTTTCTCTCTCTACAACAAATGATGTTTCCTTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGTATCTGTTTTCTCTCTCTACAACAAATGATGTTTCCTTTGGA  800

seq1  AGAACACAATGCCAAATGAGACCACAGCCACGATGTCAATAAAAGCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAATGCCAAATGAGACCACAGCCACGATGTCAATAAAAGCATTA  850

seq1  TGAAACTGG-AAGGAACCACAGATAGTGTTGTCAAGCCAGCTTTTGAGGA  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGGAAAGGAACCACAGATAGTGTTGTCAAGCCAGCTTTTGAGGA  900

seq1  AGCAAGATGTAAACCATTGCATCTTAGATATCACAGAAAAAGAGTCAAAC  949
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  AGCAAGATGTAAACCATTGCATCTTAGATATCACAG-AAAAGAGTC-AAC  948

seq1  CAGATTGGACTGATTCCCCAGAATCAAAGCCCCAATTCTAATACCTCAGA  999
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CAGATTGGACTGATTCCCCAGAATCAAAGCCC--ATTCTAATACCTCAGA  996

seq1  CTGTAACAGGTGATAGGGTCTTAGAGAGGCAGTCAGGTAGAATTAGGTCT  1049
      |||| ||| |||||||||||||||||||||||||| |||| ||||| |||
seq2  CTGT-ACA-GTGATAGGGTCTTAGAGAGGCAGTCAAGTAG-ATTAGTTCT  1043

seq1  TAGATGGCTGTAATCGAGTACA  1071
      ||||| ||||| ||||||||||
seq2  TAGAT-GCTGT-ATCGAGTACA  1063

seq1: chr2_49344168_49345335
seq2: B6Ng01-079B17.g_69_1232 (reverse)

seq1  ATTACTAACACA-ACTTACATTACCTACTTTACATTTTCCAGGAACATCA  49
      |||||||||||| ||||||||   || |||||||  || ||| ||  |||
seq2  ATTACTAACACACACTTACAT--ACTTCTTTACA--TTACAGAAAATTCA  46

seq1  CCT-ACAGCGAGCTATTTCA-GCGCAGCAAGTATTTAGAGAAAAAAAAGA  97
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTAACAGCGAGCTATTTCAGGCGCAGCAAGTATTTAGAGAAAAAAAAGA  96

seq1  GAGCATGGTCATTCCAGTTCCTGAGGCAG-AGAGCAACGTCAACTATTAC  146
      |||||| ||||||||||||||||| |||| | ||||||||||||||||||
seq2  GAGCAT-GTCATTCCAGTTCCTGA-GCAGAAAAGCAACGTCAACTATTAC  144

seq1  AATCGCTTGTACAAAGGGGAGTTCAAACAGCCCAAGCAGTTCATTCATAT  196
      |||||||||||||||||| |||||||||||||||||||| ||||||| ||
seq2  AATCGCTTGTACAAAGGGAAGTTCAAACAGCCCAAGCAG-TCATTCAAAT  193

seq1  TCAGCGTAAGTTTGCTAATGGATTGTTTTCTCTTTGTAATTTTAAATTAT  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAGCGTAAGTTTGCTAATGGA-TGTTTTCTCTTTGTAATTTTAAATTAT  242

seq1  CAGCCACTGAAAATATTCTGTATTGTCTGAGATTTTAAGCTTTTAGTTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTGAAAATATTCTGTATTGTCTGAGATTTTAAGCTTTTAGTTCA  292

seq1  TATTCTTTGGTGAATAGAATGTTAAACATGAGATATTTAAATCTGTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGGTGAATAGAATGTTAAACATGAGATATTTAAATCTGTTTGT  342

seq1  ATTTTCATTTGAGCTTGGAGATCACTTTGAGTTTTAATAATATTTGGACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTGAGCTTGGAGATCACTTTGAGTTTTAATAATATTTGGACT  392

seq1  TGTAATATTTATATAATATAAGATTTTTTTAGAACACAGTTTATTATACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTTATATAATATAAGATTTTTTTAGAACACAGTTTATTATACC  442

seq1  GCTAAAAAGAGGATGGTTTGCCATACTCAAATAAAATTTATTTTTAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAGAGGATGGTTTGCCATACTCAAATAAAATTTATTTTTAATGT  492

seq1  TCACAAGTAGGGCTATATCTTTAGAAAAATTCAAAACATCTTGCACTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTAGGGCTATATCTTTAGAAAAATTCAAAACATCTTGCACTTAA  542

seq1  GTTTAATAAAATTCTAATTGTAATTTTTTTTACTGCTCTTTTACTATAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAAATTCTAATTGTAATTTTTTTTACTGCTCTTTTACTATAGA  592

seq1  ATTCCTCCCAATGTTGGTACATAAGTGGTCACCACCTCCAGTTTTAGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCCAATGTTGGTACATAAGTGGTCACCACCTCCAGTTTTAGCAG  642

seq1  TATTTGACGATCTCTTTATTGTAACATTTTTACTACCCTCTGTTTTTCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACGATCTCTTTATTGTAACATTTTTACTACCCTCTGTTTTTCAT  692

seq1  CCTTATGCTATTCTGTCTTCTTTACAAAGTCTTGCCTTGCCACCAGAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGCTATTCTGTCTTCTTTACAAAGTCTTGCCTTGCCACCAGAGTT  742

seq1  GTGTTCCAAATTCTCAGTCTCATGCAGTCATGTTCTTGATTAAAACCTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAAATTCTCAGTCTCATGCAGTCATGTTCTTGATTAAAACCTTA  792

seq1  TTTCCCGTATTGTTAATATGCTGCACACAAGTGTCAGTGTTTCCTATCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGTATTGTTAATATGCTGCACACAAGTGTCAGTGTTTCCTATCTT  842

seq1  GTCAGAGTTGCCATCATGGTTTACACGTTGGGTTACTTGTTAAGACAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTGCCATCATGGTTTACACGTTGGGTTACTTGTTAAGACAGAG  892

seq1  GTTCAGGGGACGTCCTGCTGAAGCTCTGCTCTCTGACTGTCCACGGGTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGGACGTCCTGCTGAAGCTCTGCTCTCTGACTGTCCACGGGTAT  942

seq1  GCTGACTGGAAATGTATATTTGAAAGCACTGGGGATTAGGTCTGGGGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGGAAATGTATATTTGAAAGCACTGGGGATTAGGTCTGGGGTTT  992

seq1  GTTAATGCTTGGCATGTACTCTACCCCTGGATTACACCCTCCTAATGATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCTTGGCATGTACTCTACCCCTGGATTACACCCTCCTAATGATA  1042

seq1  CAAATTGTAATAAAGTCCCCTAGGTAATCCTGAAACATCAGCATATTTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTAATAAAGTCCCCTAGGTAATCCTGAAACATCAGCATATTTAT  1092

seq1  GATTATCTTCCTTTGATCCTAAGATGTCCATCTTTGTTTTTTATCTTTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTCCTTTGATCCTAAGATGTCCATCTTTGTTTTTTATCTTTGA  1142

seq1  ATTGAGTTTTCATCTTGAATTC  1168
      ||||||||||||||||||||||
seq2  ATTGAGTTTTCATCTTGAATTC  1164