BAC Information

Click to search

BAC

Clone NameB6Ng01-079N13
Chromosome2 (Build37)
Map Location 55,982,590 - 55,983,717
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N13.bB6Ng01-079N13.g
ACCDH895141DH895142
length1,1201,159
definitionDH895141|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N13, 5' end.DH895142|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatttttaattgaaagcaggtaggcagtggcaaataagaggaat
ttgagggagaaaggggaatggtgtaaatggtataaatatagttcttcagt
atgaaattctaaaagaaaataacatttaaattaaaaagtccaaggattat
cttaatgagaaattcatacagccccaaacttggtagccccactagtcaaa
aatcttcagtttcatagaaaatttgaaatgtaaaatattaacaaacaggt
cacaataaaaaaaattagacattctctctaaagccacatagagcattaaa
ttgtattatgtatcagaccatgaaaaaagacaataacctcctaatatttc
aaaattaaaatgtatatatgagatttatttattttagacttcaataatat
agaaagttataccttagtgtggagtaaaaatgagattgtatttacagagg
aagcttttcagccctccatttctcatccatgccaatgagttcctagttta
caattcacagtgtctgacagacctactcccacagtgaattattactggtc
ttacaaaccctgctgccttacctacagaccaatgaagcaatttcccattt
gaaaaatatttgcttacttgactactaaagatgcatggtaatctagaatt
tcatttgtatattttggcttttctagttatgaaaaaggagtggaagtttt
tgtggtcaagttgtaagataagtggtttgagtcaaaattttgatttgact
ctggtccaaaataggaaaaaaatagtatatagatatctatcactcatcct
caatacatagtgagacactaaacatagtcatctggggcagcctcagatga
acccagaagccctctgaatgccaaacttagtttttaaattaacctaatcc
ttgcttacatgttagattgccttcacaatatacttatcatctctaaaatc
acagctggaagaaaatgtaatcttcctaaaatgtatgaaagttcacattt
acttgatgctatgtaacacactgagctagaaaattccaaaggctcttcaa
actgagttgaactgacatcactgagcagcataactcctgaaatatctgaa
tcagtctataaaataattaa
gaattctcacctgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcc
gaaaattggacatagtactaccagaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagagcaatggatacaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaattcacgaaattcctaggca
aatggttggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcaaatgaaatgtactcactgataagtggatattaacccagaaa
cttagtatagcgagatataatgtacaatatgtaaaacatatgaaactgaa
gaagaacgaagacaaaagtgtggacactttgctcattcttagaattggaa
gcaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggtccatctggagactgccatatccagggatccatcccataatt
agcctccaagtgatgacaccattgcatacactagcaagcctttgttgcaa
ggacggtgatatagctgtcccttttgagactaggccgggcctagcaaaca
cagaagtggatgctcacagtcaactattggatggatcacagggcccccaa
tggaggagctagagaagtatccaaggagctaagagatctgcaccctatcg
gaggacacgttatgaactacagtacccagagctcttgactcttagctgca
tatgttatcaaaatgactagtcgccatcactgaaggagagtcccatgtca
gcaacgttatatgccagttcaggaatgcagcaaaatgggatggtgtggat
agggaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55982590_55983717
seq2: B6Ng01-079N13.b_50_1169

seq1  GAATTCAATTTTTAATTGAAAGCAGGTAGGCAGTGGCAAATAAGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTTAATTGAAAGCAGGTAGGCAGTGGCAAATAAGAGGAAT  50

seq1  TTGAGGGAGAAAGGGGAATGGTGTAAATGGTATAAATATAGTTCTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAGAAAGGGGAATGGTGTAAATGGTATAAATATAGTTCTTCAGT  100

seq1  ATGAAATTCTAAAAGAAAATAACATTTAAATTAAAAAGTCCAAGGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCTAAAAGAAAATAACATTTAAATTAAAAAGTCCAAGGATTAT  150

seq1  CTTAATGAGAAATTCATACAGCCCCAAACTTGGTAGCCCCACTAGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGAGAAATTCATACAGCCCCAAACTTGGTAGCCCCACTAGTCAAA  200

seq1  AATCTTCAGTTTCATAGAAAATTTGAAATGTAAAATATTAACAAACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGTTTCATAGAAAATTTGAAATGTAAAATATTAACAAACAGGT  250

seq1  CACAATAAAAAAAATTAGACATTCTCTCTAAAGCCACATAGAGCATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAAAAAATTAGACATTCTCTCTAAAGCCACATAGAGCATTAAA  300

seq1  TTGTATTATGTATCAGACCATGAAAAAAGACAATAACCTCCTAATATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTATGTATCAGACCATGAAAAAAGACAATAACCTCCTAATATTTC  350

seq1  AAAATTAAAATGTATATATGAGATTTATTTATTTTAGACTTCAATAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAATGTATATATGAGATTTATTTATTTTAGACTTCAATAATAT  400

seq1  AGAAAGTTATACCTTAGTGTGGAGTAAAAATGAGATTGTATTTACAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTATACCTTAGTGTGGAGTAAAAATGAGATTGTATTTACAGAGG  450

seq1  AAGCTTTTCAGCCCTCCATTTCTCATCCATGCCAATGAGTTCCTAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTCAGCCCTCCATTTCTCATCCATGCCAATGAGTTCCTAGTTTA  500

seq1  CAATTCACAGTGTCTGACAGACCTACTCCCACAGTGAATTATTACTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACAGTGTCTGACAGACCTACTCCCACAGTGAATTATTACTGGTC  550

seq1  TTACAAACCCTGCTGCCTTACCTACAGACCAATGAAGCAATTTCCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACCCTGCTGCCTTACCTACAGACCAATGAAGCAATTTCCCATTT  600

seq1  GAAAAATATTTGCTTACTTGACTACTAAAGATGCATGGTAATCTAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATTTGCTTACTTGACTACTAAAGATGCATGGTAATCTAGAATT  650

seq1  TCATTTGTATATTTTGGCTTTTCTAGTTATGAAAAAGGAGTGGAAGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTATATTTTGGCTTTTCTAGTTATGAAAAAGGAGTGGAAGTTTT  700

seq1  TGTGGTCAAGTTGTAAGATAAGTGGTTTGAGTCAAAATTTTGATTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAAGTTGTAAGATAAGTGGTTTGAGTCAAAATTTTGATTTGACT  750

seq1  CTGGTCCAAAATAGGAAAAAAATAGTATATAGATATCTATCACTCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCAAAATAGGAAAAAAATAGTATATAGATATCTATCACTCATCCT  800

seq1  CAATACATAGTGAGACACTAAACATAGTCATCTGGGGCAGCCTCAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATAGTGAGACACTAAACATAGTCATCTGGGGCAGCCTCAGATGA  850

seq1  ACCCAGAAGCCCTCTGAATGCCAAACTTAGTTTTTAAAATTAACCTAATC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCCAGAAGCCCTCTGAATGCCAAACTTAGTTTTT-AAATTAACCTAATC  899

seq1  CTTGCTTACATGTTAGATTGCCTTCACAATATACTTATCATCTCTAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTACATGTTAGATTGCCTTCACAATATACTTATCATCTCTAAAAT  949

seq1  CACAGCTGGAAGAAAATGTAATCTTCCTAAAATGTTATGAAAGTTCACAT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACAGCTGGAAGAAAATGTAATCTTCCTAAAATG-TATGAAAGTTCACAT  998

seq1  TTACTTGATGCTATGTAACACACTGAGCTAGAAAATTTCAAAAGGCTTCT  1050
      ||||||||||||||||||||||||||||||||||| ||| |||||| |||
seq2  TTACTTGATGCTATGTAACACACTGAGCTAGAAAA-TTCCAAAGGC-TCT  1046

seq1  TCAAACTGAGTTGAACTGACATCACTGAGCAGCAATTAAACTCCTGAAAT  1100
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  TCAAACTGAGTTGAACTGACATCACTGAGCAGCA---TAACTCCTGAAAT  1093

seq1  AATCTG-ATCAGTCTAATAAAATAATTAA  1128
       ||||| |||||||| |||||||||||||
seq2  -ATCTGAATCAGTCT-ATAAAATAATTAA  1120