BAC Information

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BAC

Clone NameB6Ng01-080P21
Chromosome2 (Build37)
Map Location 74,415,000 - 74,511,685
singlet/doubletdoublet
Overlap geneLnp, LOC100040519, Evx2, Hoxd13
Upstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneHoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P21.bB6Ng01-080P21.g
ACCDH895971DH895972
length3561,074
definitionDH895971|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P21, 5' end.DH895972|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,511,330 - 74,511,685)(74,415,000 - 74,416,082)
sequence
tctcctttctactggagcatcctctggcctgaattttcagttctaatagt
tccagcactctcagagcccctgcctcctgcacagagattcctaggtagtt
acaggcctaagggtgcatccttagactatggctgccttataattatgttt
gcttctcaggaccaaatacataagtgtgaatcaggaatgaaaaggacagc
tagattttttttccaggttttttcccccccttaatcgacccacttcattc
ctccaagtctataactttcaaggtctggtaggcaaagttctttttgagaa
agctggtggctgatgctgaaggctggagaccatgagggaaggtgggagga
ggaagg
gaattctcaactcacttcaaatcacattaaaacaatgggataaggattca
aaacatggctcagccatttaccagctatatgatcttaaacttagagagtt
cttaaactctgagctttggctaataaagcagttagaatatttacattcct
tggaattgtataaatttagtgaacttatttatcacttggcacagtattta
gcacatagtatttaggtaattttagccattactattgctgttaccaaaac
cacatgtaatatctaaatgaagcatgtgcctaacattccattaaatgagt
gcatattttaattatttcataatttaaaatctgtaagtataaaataagtt
tgtgtttttactaaaaatatttttctcatttaccctagcatggaaataaa
taaatggagtatttttcaagcacttcccattataataaacgtataagcct
tcatagaaaacaacaaaagaaatggagttttgtggtttttaacctttgat
tccaaacttaaatataaactagtcacctttaacagcatctccacattata
ctacacaatttgggtttaaatgtgatttgttcgaaatcgctttcaaatgt
ccaaataggcaactctgaaatatcttacaccaggtttattgcccaaaaaa
aaaaaaaaaaaaatggtaagcacacttctaaaagcacttttaatatgaga
tgaccaccacaaaataaataaatataaaaattaaaaataaaaaagactga
cagggagatttctatatgaactcataccttttattagagtcacctatcca
agcattcttccaacatataaacaccataaacatttattaacatcattact
atggtgaccccaatagatgtcaaggaactttttaaaacttcacttttaaa
tgaaccactcttgcttaagttcgtattcgaatcaacttgtctctaagaag
gcactatggagacctttgggaactaggtattagccctgcttgccagctgg
aacataattatgctgtacttaatttactcacatcatcaacctctagacaa
tgttgtcacgcttaagactgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74511330_74511685
seq2: B6Ng01-080P21.b_52_407 (reverse)

seq1  CCTTCCTCCTCCCACCTTCCCTCATGGTCTCCAGCCTTCAGCATCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCTCCCACCTTCCCTCATGGTCTCCAGCCTTCAGCATCAGCCA  50

seq1  CCAGCTTTCTCAAAAAGAACTTTGCCTACCAGACCTTGAAAGTTATAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCTCAAAAAGAACTTTGCCTACCAGACCTTGAAAGTTATAGAC  100

seq1  TTGGAGGAATGAAGTGGGTCGATTAAGGGGGGGAAAAAACCTGGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAATGAAGTGGGTCGATTAAGGGGGGGAAAAAACCTGGAAAAAA  150

seq1  AATCTAGCTGTCCTTTTCATTCCTGATTCACACTTATGTATTTGGTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCTGTCCTTTTCATTCCTGATTCACACTTATGTATTTGGTCCTG  200

seq1  AGAAGCAAACATAATTATAAGGCAGCCATAGTCTAAGGATGCACCCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAACATAATTATAAGGCAGCCATAGTCTAAGGATGCACCCTTAG  250

seq1  GCCTGTAACTACCTAGGAATCTCTGTGCAGGAGGCAGGGGCTCTGAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAACTACCTAGGAATCTCTGTGCAGGAGGCAGGGGCTCTGAGAGT  300

seq1  GCTGGAACTATTAGAACTGAAAATTCAGGCCAGAGGATGCTCCAGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACTATTAGAACTGAAAATTCAGGCCAGAGGATGCTCCAGTAGAA  350

seq1  AGGAGA  356
      ||||||
seq2  AGGAGA  356

seq1: chr2_74415000_74416082
seq2: B6Ng01-080P21.g_68_1141

seq1  GAATTCTCAACTCACTTCAAATCACATTAAAACAATGGGATAAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTCACTTCAAATCACATTAAAACAATGGGATAAGGATTCA  50

seq1  AAACATGGCTCAGCCATTTACCAGCTATATGATCTTAAACTTAGAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGCTCAGCCATTTACCAGCTATATGATCTTAAACTTAGAGAGTT  100

seq1  CTTAAACTCTGAGCTTTGGCTAATAAAGCAGTTAGAATATTTACATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCTGAGCTTTGGCTAATAAAGCAGTTAGAATATTTACATTCCT  150

seq1  TGGAATTGTATAAATTTAGTGAACTTATTTATCACTTGGCACAGTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGTATAAATTTAGTGAACTTATTTATCACTTGGCACAGTATTTA  200

seq1  GCACATAGTATTTAGGTAATTTTAGCCATTACTATTGCTGTTACCAAAAC  250
      |||||||||||||||||||||||                  |||||||||
seq2  GCACATAGTATTTAGGTAATTTTNNNNNNNNNNNNNNNNNNTACCAAAAC  250

seq1  CACATGTAATATCTAAATGAAGCATGTGCCTAACATTCCATTAAATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAATATCTAAATGAAGCATGTGCCTAACATTCCATTAAATGAGT  300

seq1  GCATATTTTAATTATTTCATAATTTAAAATCTGTAAGTATAAAATAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTAATTATTTCATAATTTAAAATCTGTAAGTATAAAATAAGTT  350

seq1  TGTGTTTTTACTAAAAATATTTTTCTCATTTACCCTAGCATGGAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTACTAAAAATATTTTTCTCATTTACCCTAGCATGGAAATAAA  400

seq1  TAAATGGAGTATTTTTCAAGCACTTCCCATTATAATAAACGTATAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGTATTTTTCAAGCACTTCCCATTATAATAAACGTATAAGCCT  450

seq1  TCATAGAAAACAACAAAAGAAATGGAGTTTTGTGGTTTTTAACCTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAAACAACAAAAGAAATGGAGTTTTGTGGTTTTTAACCTTTGAT  500

seq1  TCCAAACTTAAATATAAACTAGTCACCTTTAACAGCATCTCCACATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTTAAATATAAACTAGTCACCTTTAACAGCATCTCCACATTATA  550

seq1  CTACACAATTTGGGTTTAAATGTGATTTGTTCGAAATCGCTTTCAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATTTGGGTTTAAATGTGATTTGTTCGAAATCGCTTTCAAATGT  600

seq1  CCAAATAGGCAACTCTGAAATATCTTACACCAGGTTTATTGCCCAAAAAA  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAAATAGGCAACTCTGAAATATCTTACACCAGGTTTATTGCCC-AAAAA  649

seq1  AAAAAAAAAAAAAATGGTAAGCACACTTCTAAAAGCACTTTTAATATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAATGGTAAGCACACTTCTAAAAGCACTTTTAATATGAG  699

seq1  ATGACCACCACAAAATAAATAAATATAAAAATTAAAAATAAAAAAGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACCACAAAATAAATAAATATAAAAATTAAAAATAAAAAAGACTG  749

seq1  ACAGGGAGATTTCTATATGAACTCATACC-TTTATTAGAGTCACCTATCC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAGGGAGATTTCTATATGAACTCATACCTTTTATTAGAGTCACCTATCC  799

seq1  AAGCATTCTTCCAACATATAAACACCATAAACATTTATTAACATCATTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCTTCCAACATATAAACACCATAAACATTTATTAACATCATTAC  849

seq1  TATGGTGACCCCAATAGATGTCAAGGAACTTTTTAAAACTTCACTTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGACCCCAATAGATGTCAAGGAACTTTTTAAAACTTCACTTTTAA  899

seq1  ATGAACCACTCTTGCTTAAGGTTCGTATTCGAAATCAACTTTGTTCTTCT  949
      ||||||||||||||||||| ||||||||||| ||||||| ||||   |||
seq2  ATGAACCACTCTTGCTTAA-GTTCGTATTCG-AATCAAC-TTGT--CTCT  944

seq1  AAGAAGGCACTATGGAGACCTTTGGGAACTAGGTATTAGCCCTGCCTGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGAAGGCACTATGGAGACCTTTGGGAACTAGGTATTAGCCCTGCTTGCC  994

seq1  AGCTTGAACATATATATGCCTGTAACTAAATTTACTCACATCCATCACAC  1049
      |||| |||||||  |||| |||| ||| ||||||||||||| ||||| ||
seq2  AGCTGGAACATAATTATG-CTGT-ACTTAATTTACTCACAT-CATCA-AC  1040

seq1  CTCTAGACAATGTTGTCAACGC-TAAGACTGAGGC  1083
      ||||||||||||||||| |||| ||||||||||||
seq2  CTCTAGACAATGTTGTC-ACGCTTAAGACTGAGGC  1074