BAC Information

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BAC

Clone NameB6Ng01-082A06
Chromosome2 (Build37)
Map Location 88,881,146 - 89,043,961
singlet/doubletdoublet
Overlap geneOlfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983
Upstream geneOlfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217
Downstream geneGA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082A06.bB6Ng01-082A06.g
ACCDH896698DH896699
length1,2481,015
definitionDH896698|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A06, 5' end.DH896699|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,881,146 - 88,882,227)(89,043,445 - 89,043,961)
sequence
gaattcagcattctgcttgcagccttcagatgaagatgcagaagtctcag
ctcctcctgtaccttttctgcctggatgccactatgttccaactttgatg
ataatggcctgaacctctgaaattgtaagccagccccaattaaatgttat
ccttacaagagttgccttggttatggcgtctgttcacagcagtaagatcc
taactaagacaggccaaaagactgaaattcatagcatccatcctaatttt
atgtatcttacattgtcactaccatctcttataagacatttattggttat
aggagcagaagctagtcatgagctttggacagccatacactctctgtact
tggcagagttaggtgtctctctatcaccaaacagtgcaaaagtaagcttc
tctgactggtgctaagaggtactccagttgacagagatggaagccagaca
atgtgttcttttatctatacaaaagcagttgattctttcctatgacattc
ttcttcctaggattaataggagtaagatgctagatatgtattcctctcct
gtgcacaggcatcaaatactatctgtatgtgtttaacaaactccaaacac
tcatgtcatcaatacagcagtgggtattgatatcttgcctgataagccag
actcgagcatgcatggtccacacagctcctaagggatttagctatttttt
ttgttttctgttttttgttttatttgacttggtttagttttctgaataga
gactatttaacactttcttggacttaatacattagccagcagaaaataat
attttgaaaatttcttaacttgcaagcaactatgaaatcaaatgaagttt
aatatttcccaattattacagaacaaattaatttttcctatctcaaaagg
aggacatgacatcacacaaaaaaaatcatataacaaagtagaaacaaaac
tcagttgcacaatttactaatcctgctgatacatgttcctatcatctgac
tatattgaagctttgagatcaataaaaattctatagtccaaatatttcaa
atctactaccaccataagccagaccccctcaagaatcatctctaccctaa
gccattttttgttctatgtaaatggcctgaaatctctgaagccaaatatc
tccattgcgaataagctacaccctccaagcgttagaaggtggctatctgt
ggacactgaatgggctttcaggtttctaccatgtctacaattcagtcc
gaattcttaaacaagccaagctgttgccaggacaataagttgctatctat
aaatggatagcaaggcctattgctgcatacaacattgtgtaactcattat
acataaagaagttgagctgctacctacatagagccttcagtcttaagttc
tggagctttgatacttgaaggtactctacctactaccaaaaaagaaaaaa
aagaaaaaaagaaaaaaagaaaaaaaaagaaaaaagaaaaaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaaaagaaaaaagaaaaaaa
gaagcaccaaatgagccacaaaccatttgattaacagtagagtcttacct
gcaagatatgctcggggacaatggtggttcaaagcttgtgggaataacta
actagtgagtgatttgactctattagatggaacccatactcaaaattgct
tgggttaccaagaaccttagactagatagtctagggatatagggtcaagc
caaatgatgctagtctaaatactttttaaaaagtagtaataaaatgaccc
accatgatattctactatattcataagttagtgccttgttcagccatcac
cagagaagctttctcctacagcagatgggaacaaatacagagacctatag
ccagatatgcagagagtgagagatcttggaatattcatgtccaaaaatga
tgtctttctatcaaatcccttcactctgagctcagagaacccccatggtg
gaagagaaggcagaaagaacataaaacccagaatgggaagatacatcaag
aaaacaagatcctctaaatgaacatgaacaaagttcatctctccagatgg
aagcagcatgcagcggaagatctgggaagagtagacagagggaaattgta
tcacgcacattatattagtacattattcattagattaaaacagaaattat
tttccaatcacactccactatgactgactagtttttatatgtggagtgga
tcagtatggaggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88881146_88882227
seq2: B6Ng01-082A06.b_219_1293

seq1  TGGCGTCTGTTCACAGCAGTAAGATCCTAACTAAGACAGGCCAAAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCTGTTCACAGCAGTAAGATCCTAACTAAGACAGGCCAAAAGACT  50

seq1  GAAATTCATAGCATCCATCCTAATTTTATGTATCTTACATTGTCACTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATAGCATCCATCCTAATTTTATGTATCTTACATTGTCACTACC  100

seq1  ATCTCTTATAAGACATTTATTGGTTATAGGAGCAGAAGCTAGTCATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTATAAGACATTTATTGGTTATAGGAGCAGAAGCTAGTCATGAGC  150

seq1  TTTGGACAGCCATACACTCTCTGTACTTGGCAGAGTTAGGTGTCTCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGCCATACACTCTCTGTACTTGGCAGAGTTAGGTGTCTCTCTA  200

seq1  TCACCAAACAGTGCAAAAGTAAGCTTCTCTGACTGGTGCTAAGAGGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAACAGTGCAAAAGTAAGCTTCTCTGACTGGTGCTAAGAGGTACT  250

seq1  CCAGTTGACAGAGATGGAAGCCAGACAATGTGTTCTTTTATCTATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGACAGAGATGGAAGCCAGACAATGTGTTCTTTTATCTATACAAA  300

seq1  AGCAGTTGATTCTTTCCTATGACATTCTTCTTCCTAGGATTAATAGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGATTCTTTCCTATGACATTCTTCTTCCTAGGATTAATAGGAGT  350

seq1  AAGATGCTAGATATGTATTCCTCTCCTGTGCACAGGCATCAAATACTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTAGATATGTATTCCTCTCCTGTGCACAGGCATCAAATACTATC  400

seq1  TGTATGTGTTTAACAAACTCCAAACACTCATGTCATCAATACAGCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTTAACAAACTCCAAACACTCATGTCATCAATACAGCAGTGG  450

seq1  GTATTGATATCTTGCCTGATAAGCCAGACTCGAGCATGCATGGTCCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATATCTTGCCTGATAAGCCAGACTCGAGCATGCATGGTCCACAC  500

seq1  AGCTCCTAAGGGATTTAGCTATTTTTTTTGTTTTCTGTTTTTTGTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTAAGGGATTTAGCTATTTTTTTTGTTTTCTGTTTTTTGTTTTAT  550

seq1  TTGACTTGGTTTAGTTTTCTGAATAGAGACTATTTAACACTTTCTTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGGTTTAGTTTTCTGAATAGAGACTATTTAACACTTTCTTGGAC  600

seq1  TTAATACATTAGCCAGCAGAAAATAATATTTTGAAAATTTCTTAACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATTAGCCAGCAGAAAATAATATTTTGAAAATTTCTTAACTTGC  650

seq1  AAGCAACTATGAAATCAAATGAAGTTTAATATTTCCCAATTATTACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTATGAAATCAAATGAAGTTTAATATTTCCCAATTATTACAGAA  700

seq1  CAAATTAATTTTTCCTATCTCAAAAGGAGGACATGACATCACACAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAATTTTTCCTATCTCAAAAGGAGGACATGACATCACACAAAAAA  750

seq1  AATCATATAACAAAAGTAGAAACAAAACTCAGTTGCACAATTTACTAATC  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAAC-AAAGTAGAAACAAAACTCAGTTGCACAATTTACTAATC  799

seq1  CTGCTGATACATGTTCCTATCATCTTGACTTATATTGAAGCTTTGAGATC  850
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  CTGCTGATACATGTTCCTATCATC-TGAC-TATATTGAAGCTTTGAGATC  847

seq1  AATAAAAATTCTATAGTTCAAATATTTCAAATCTACTACCACCATAAGGC  900
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AATAAAAATTCTATAGTCCAAATATTTCAAATCTACTACCACCATAAGCC  897

seq1  AGACCCCCTCAAAGAATCATCTCTACCCTAAG-CATTTTTTG-TCTATGT  948
      |||||||||| ||||||||||||||||||||| ||||||||| |||||||
seq2  AGACCCCCTC-AAGAATCATCTCTACCCTAAGCCATTTTTTGTTCTATGT  946

seq1  AAAATGGCCTGAAATCTCTGAAGCCAAATATCTCCATTGCCAATAAAGCT  998
       ||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  -AAATGGCCTGAAATCTCTGAAGCCAAATATCTCCATTGCGAAT-AAGCT  994

seq1  ACACCTTCACAGCTTTAAGAGGTGGCTTATCTGTTGCACCATGAATGGGC  1048
      ||||| ||  ||| |||  ||||||| |||||| || ||  |||||||||
seq2  ACACCCTCCAAGCGTTAGAAGGTGGC-TATCTG-TGGACACTGAATGGGC  1042

seq1  TTCAAGTTTTCTACCCATTGCTACAATTCAGTCC  1082
      ||  || |||||| ||||  ||||||||||||||
seq2  TTTCAGGTTTCTA-CCATGTCTACAATTCAGTCC  1075

seq1: chr2_89043445_89043961
seq2: B6Ng01-082A06.g_582_1082 (reverse)

seq1  CTACCTCCATACTGATCCCACCTCCACATATTACAAAACTAGTCAGTTCA  50
      ||||||||||||||||||   ||||||||||   |||||||||||| |||
seq2  CTACCTCCATACTGATCC--ACTCCACATAT--AAAAACTAGTCAG-TCA  45

seq1  TAGTGGAAGTGTGATTTGGAAAATAATTTTCTTGTTTTAATTCTAATGAA  100
      |||||| ||||||| ||||||||||||||   |||||||| |||||||||
seq2  TAGTGG-AGTGTGA-TTGGAAAATAATTT--CTGTTTTAA-TCTAATGAA  90

seq1  TAATTGTTACTAATATAATGTGCCTTGATTACAATTTTCCCTCTGTCTAC  150
      ||||   ||||||||||||||| | ||| ||||| |||||||||||||||
seq2  TAAT--GTACTAATATAATGTG-CGTGA-TACAA-TTTCCCTCTGTCTAC  135

seq1  TCTTCCCAGATCTTCCGCTGCATGCTGCTTCCATCTTGGAGAGATGAACT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTCCCAGATCTTCCGCTGCATGCTGCTTCCATC-TGGAGAGATGAACT  184

seq1  TTGTTCATGTTCATTTAGAGGATCTTGTTTTCTTGATGTATCTTCCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATGTTCATTTAGAGGATCTTGTTTTCTTGATGTATCTTCCCATT  234

seq1  CTGGGTTTTATGTTCTTTCTGCCTTCTCTTCCACCATGGGGGTTCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTTATGTTCTTTCTGCCTTCTCTTCCACCATGGGGGTTCTCTGA  284

seq1  GCTCAGAGTGAAGGGATTTGATAGAAAGACATCATTTTTGGACATGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGTGAAGGGATTTGATAGAAAGACATCATTTTTGGACATGAATA  334

seq1  TTCCAAGATCTCTCACTCTCTGCATATCTGGCTATAGGTCTCTGTATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATCTCTCACTCTCTGCATATCTGGCTATAGGTCTCTGTATTTG  384

seq1  TTCCCATCTGCTGTAGGAGAAAGCTTCTCTGGTGATGGCTGAACAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTGCTGTAGGAGAAAGCTTCTCTGGTGATGGCTGAACAAGGCA  434

seq1  CTAACTTATGAATATAGTAGAATATCATGGTGGGTCATTTTATTACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTATGAATATAGTAGAATATCATGGTGGGTCATTTTATTACTACT  484

seq1  TTTTAAAAAGTATTTAG  517
      |||||||||||||||||
seq2  TTTTAAAAAGTATTTAG  501