BAC Information

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BAC

Clone NameB6Ng01-082D17
Chromosome2 (Build37)
Map Location 51,075,461 - 51,195,070
singlet/doubletdoublet
Overlap geneLOC666802
Upstream gene2010311D03Rik, LOC666781, LOC227885, Rnd3
Downstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D17.bB6Ng01-082D17.g
ACCDH896849DH896850
length1,1531,095
definitionDH896849|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D17, 5' end.DH896850|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,193,915 - 51,195,070)(51,075,461 - 51,076,570)
sequence
gaattccataatgaatttcctaaatgaatctagctacttgctcagagata
gagaggaagataggcagtcctgaggcatgttttgcataggtgtatcagag
gaatgctcctgttgggaattttgtataacacattgaaatgacagagcaaa
gaaatgttcagaaaatatcagaggatcaatatggaaacacatctcctaga
gggagtatgtaaccatcagaatttgagaggtaattggggaattatccttc
aatctagatagaaacatatatttttttaaaaatcagtcctaaatagggga
cactaactcaggaggcttgaggaagcatgccattgatgccaaattttatg
agacgctgaccagccctttaatgcatatcctattgaataagaagcctctg
aggttttgtgttaggtgtctgcaaaggtgtgttcacatgcttcctgtata
tcaccttttgctctttggagatattaataaaaatgctccttagaaatctc
ccagtgctaatcatccttcagataggaacaagcatttgtgcactatgcaa
gcagcctctctactttcctttcccagcacagttagcatgctctgtggcag
actcaacatagattctcaggaaaacgtagagaggaaggtacttgcagaag
accttttaatcttgacatttatatgaactttgctgggatttgtttgttac
catagacatatttatttcattatatttagcattgcagtatgctataggct
atttataatcgagtaaactcaatgctcttgtgaaatccctatctttatct
catgtttacatatagctcctaggacatggggcagtccatagtgtgttgcc
tgcaccagtttgagaagcttcagagaaaaggactactcatatccttttac
caatccttaaagagggacaatggcgtacactgcactgtgagggaaaagaa
atataactgtgcacaaggacttagagtttagaagtcagtttgtattataa
gcaaagaaaccaagaatcatcagaagaaaagtggcttcctaaaaacactt
tctagaagacaaagcatgcataattgtagctaacccacctaaagcacatt
ttaggaagcctcggaacctccacgatcatggtagaatagaatttcttact
ttc
gaattcattgtctgaggaatttacatcctgtggtttaaaatggatgccaa
atgtgaaaagaaaaaaaaaaacccactaacctcaacccaccactattggt
gtctgtgctgtttaaaaggagaatggactcttgagaaaaatccgaatgct
tatctgctgttcacaattgcttaatgctccaaagtgccactcctgtgtca
aggtcgttcccagcaggccttgagcttcctgcttccagcttccatcacgt
tctgcactgaatgtagccagagctttgaggatgtcaatttggatattaaa
tagataaatcagaattaaagtcatctgttgcttacgttttacagcagtgt
ggcatgaccagctgtcctgtatccaaactctgcagacagaggggtgtctt
ctgtgattaaagtgtgctagatccaagattaataaaaaatacatgaccca
gacaccttttacagagatttctatcttctttcccattcacaatctttggc
tgtagttctactatttttttttcttttttacattaaaatctaagcatgaa
agggtgaggaccatagtcataaacctgaagagcacagagaacaaagccaa
gccaaaggagagttggcctggtctctgtaggcactgtaatatggtttaaa
atttaaaccagtccaagaatggagaataccagtcatttctcatcaaccat
ttaaaagcccaatcaggagagaaacagacagcttttattagggactggtg
gacactcctaaggagaaatcaacaaagactttagaaagccactaaggctc
cacctttgcgtgtgttcagttggggccatacgatttgctggtgaggcaat
attcttttcatttctgtctgtgtgtgcatacatatgtgtgtgcgtttgca
tgtaagcaggctaaaacacatttgctagtgtgggcaagtttgatgcagtg
tggatgctgaagtgtctttagtcacttctttatctttatgtttttgagaa
aggcccctccataactagagtcactaggctagaggactagctgacagcag
tctcaggtgtcctctcactggatgcattgttttagctttactcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51193915_51195070
seq2: B6Ng01-082D17.b_45_1197 (reverse)

seq1  GAAAGT-AGAAATACTATTCTTACTATTGATCGTTGGAGGTTCTGAGGCT  49
      |||||| |||||| |||||| ||| | |||||| ||||||||| ||||||
seq2  GAAAGTAAGAAATTCTATTC-TACCA-TGATCG-TGGAGGTTCCGAGGCT  47

seq1  TCCTAAAAATGTGCCTTAGTTGGGTTAGCTACAATTATGCATGCTTTGTC  99
      |||| ||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TCCT-AAAATGTGCTTTAGGTGGGTTAGCTACAATTATGCATGCTTTGTC  96

seq1  TTCTAGAAAGTGTTTTTAGGAAGCCACTTTTCTTCTTGATGATTCTTGGT  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTAGAAAGTGTTTTTAGGAAGCCACTTTTCTTC-TGATGATTCTTGGT  145

seq1  TTCTTTGCTTATAATACAAACTGACTTCTAAACTCTAAGT-CTTGTGCAC  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTTTGCTTATAATACAAACTGACTTCTAAACTCTAAGTCCTTGTGCAC  195

seq1  AGTTATATTTCTTTTCCCTCACAGTGCAGTGTACGCCATTGTCCCTCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTTCTTTTCCCTCACAGTGCAGTGTACGCCATTGTCCCTCTTT  245

seq1  AAGGATTGGTAAAAGGATATGAGTAGTCCTTTTCTCTGAAGCTTCTCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGTAAAAGGATATGAGTAGTCCTTTTCTCTGAAGCTTCTCAAA  295

seq1  CTGGTGCAGGCAACACACTATGGACTGCCCCATGTCCTAGGAGCTATATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAGGCAACACACTATGGACTGCCCCATGTCCTAGGAGCTATATG  345

seq1  TAAACATGAGATAAAGATAGGGATTTCACAAGAGCATTGAGTTTACTCGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGAGATAAAGATAGGGATTTCACAAGAGCATTGAGTTTACTCGA  395

seq1  TTATAAATAGCCTATAGCATACTGCAATGCTAAATATAATGAAATAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAGCCTATAGCATACTGCAATGCTAAATATAATGAAATAAATA  445

seq1  TGTCTATGGTAACAAACAAATCCCAGCAAAGTTCATATAAATGTCAAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGGTAACAAACAAATCCCAGCAAAGTTCATATAAATGTCAAGAT  495

seq1  TAAAAGGTCTTCTGCAAGTACCTTCCTCTCTACGTTTTCCTGAGAATCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTCTTCTGCAAGTACCTTCCTCTCTACGTTTTCCTGAGAATCTA  545

seq1  TGTTGAGTCTGCCACAGAGCATGCTAACTGTGCTGGGAAAGGAAAGTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTCTGCCACAGAGCATGCTAACTGTGCTGGGAAAGGAAAGTAGA  595

seq1  GAGGCTGCTTGCATAGTGCACAAATGCTTGTTCCTATCTGAAGGATGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCTTGCATAGTGCACAAATGCTTGTTCCTATCTGAAGGATGATT  645

seq1  AGCACTGGGAGATTTCTAAGGAGCATTTTTATTAATATCTCCAAAGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAGATTTCTAAGGAGCATTTTTATTAATATCTCCAAAGAGCA  695

seq1  AAAGGTGATATACAGGAAGCATGTGAACACACCTTTGCAGACACCTAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATATACAGGAAGCATGTGAACACACCTTTGCAGACACCTAACA  745

seq1  CAAAACCTCAGAGGCTTCTTATTCAATAGGATATGCATTAAAGGGCTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCAGAGGCTTCTTATTCAATAGGATATGCATTAAAGGGCTGGT  795

seq1  CAGCGTCTCATAAAATTTGGCATCAATGGCATGCTTCCTCAAGCCTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTCATAAAATTTGGCATCAATGGCATGCTTCCTCAAGCCTCCTG  845

seq1  AGTTAGTGTCCCCTATTTAGGACTGATTTTTAAAAAAATATATGTTTCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTGTCCCCTATTTAGGACTGATTTTTAAAAAAATATATGTTTCTA  895

seq1  TCTAGATTGAAGGATAATTCCCCAATTACCTCTCAAATTCTGATGGTTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTGAAGGATAATTCCCCAATTACCTCTCAAATTCTGATGGTTAC  945

seq1  ATACTCCCTCTAGGAGATGTGTTTCCATATTGATCCTCTGATATTTTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCTCTAGGAGATGTGTTTCCATATTGATCCTCTGATATTTTCTG  995

seq1  AACATTTCTTTGCTCTGTCATTTCAATGTGTTATACAAAATTCCCAACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTTGCTCTGTCATTTCAATGTGTTATACAAAATTCCCAACAG  1045

seq1  GAGCATTCCTCTGATACACCTATGCAAAACATGCCTCAGGACTGCCTATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCCTCTGATACACCTATGCAAAACATGCCTCAGGACTGCCTATC  1095

seq1  TTCCTCTCTATCTCTGAGCAAGTAGCTAGATTCATTTAGGAAATTCATTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTATCTCTGAGCAAGTAGCTAGATTCATTTAGGAAATTCATTA  1145

seq1  TGGAATTC  1156
      ||||||||
seq2  TGGAATTC  1153

seq1: chr2_51075461_51076570
seq2: B6Ng01-082D17.g_71_1165

seq1  GAATTCATTGTCTGAGGAATTTACATCCTGTGGTTTAAAATGGATGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTGAGGAATTTACATCCTGTGGTTTAAAATGGATGCCAA  50

seq1  ATGTGAAAAGAAAAAAAAAAACCCACTAACCTCAACCCACCACTATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAAGAAAAAAAAAAACCCACTAACCTCAACCCACCACTATTGGT  100

seq1  GTCTGTGCTGTTTAAAAGGAGAATGGACTCTTGAGAAAAATCCGAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCTGTTTAAAAGGAGAATGGACTCTTGAGAAAAATCCGAATGCT  150

seq1  TATCTGCTGTTCACAATTGCTTAATGCTCCAAAGTGCCACTCCTGTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGTTCACAATTGCTTAATGCTCCAAAGTGCCACTCCTGTGTCA  200

seq1  AGGTCGTTCCCAGCAGGCCTTGAGCTTCCTGCTTCCAGCTTCCATCACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGTTCCCAGCAGGCCTTGAGCTTCCTGCTTCCAGCTTCCATCACGT  250

seq1  TCTGCACTGAATGTAGCCAGAGCTTTGAGGATGTCAATTTGGATATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGAATGTAGCCAGAGCTTTGAGGATGTCAATTTGGATATTAAA  300

seq1  TAGATAAATCAGAATTAAAGTCATCTGTTGCTTACGTTTTACAGCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAATCAGAATTAAAGTCATCTGTTGCTTACGTTTTACAGCAGTGT  350

seq1  GGCATGACCAGCTGTCCTGTATCCAAACTCTGCAGACAGAGGGGTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGACCAGCTGTCCTGTATCCAAACTCTGCAGACAGAGGGGTGTCTT  400

seq1  CTGTGATTAAAGTGTGCTAGATCCAAGATTAATAAAAAATACATGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTAAAGTGTGCTAGATCCAAGATTAATAAAAAATACATGACCCA  450

seq1  GACACCTTTTACAGAGATTTCTATCTTCTTTCCCATTCACAATCTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTTTACAGAGATTTCTATCTTCTTTCCCATTCACAATCTTTGGC  500

seq1  TGTAGTTCTACTATTTTTTTTTCTTTTTTACATTAAAATCTAAGCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCTACTATTTTTTTTTCTTTTTTACATTAAAATCTAAGCATGAA  550

seq1  AGGGTGAGGACCATAGTCATAAACCTGAAGAGCACAGAGAACAAAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGACCATAGTCATAAACCTGAAGAGCACAGAGAACAAAGCCAA  600

seq1  GCCAAAGGAGAGTTGGCCTGGTCTCTGTAGGCACTGTAATATGGTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGAGAGTTGGCCTGGTCTCTGTAGGCACTGTAATATGGTTTAAA  650

seq1  ATTTAAACCAGTCCAAGAATGGAGAATACCAGTCATTTCTCATCAACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCAGTCCAAGAATGGAGAATACCAGTCATTTCTCATCAACCAT  700

seq1  TTAAAAGCCCAATCAGGAGAGAAACAGACAGCTTTTATTAGGGACTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCCCAATCAGGAGAGAAACAGACAGCTTTTATTAGGGACTGGTG  750

seq1  GACACTCCTAAGGAGAAATCAACAAAGACTTTAGAAAGCCACTAAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCTAAGGAGAAATCAACAAAGACTTTAGAAAGCCACTAAGGCTC  800

seq1  CACCTTTGCGTGTGTTCAGTTGGGGCCATACGATTTGCTGGTGAGGCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGCGTGTGTTCAGTTGGGGCCATACGATTTGCTGGTGAGGCAAT  850

seq1  ATTCTTTTCATTTTCTGTCTGTGTGTGCATACATATGTGTGTGCGTTTGC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCA-TTTCTGTCTGTGTGTGCATACATATGTGTGTGCGTTTGC  899

seq1  ATGTAAGCAGGCTAAAACACATTTGCTAGTGTGGGCAAGTTTGAAGGCCA  950
      |||||||||||||||||||||||||||||||||||||||||||| |  ||
seq2  ATGTAAGCAGGCTAAAACACATTTGCTAGTGTGGGCAAGTTTGATG--CA  947

seq1  GTGGTGGATGCTGAAGTGTCTTTAGTCACTTCTTTATCTTTATG-TTTTG  999
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GT-GTGGATGCTGAAGTGTCTTTAGTCACTTCTTTATCTTTATGTTTTTG  996

seq1  AGACAGGGCCCCTCCATAAACCTAGAGTCACTAGGCTAGAAGACTAGCTG  1049
      ||| | |||||||||||||  ||||||||||||||||||| |||||||||
seq2  AGA-AAGGCCCCTCCATAA--CTAGAGTCACTAGGCTAGAGGACTAGCTG  1043

seq1  ACCAGCAAGTCCTCAGGGTTGTCCTCTCACTGGGATGCATGGTTTTAAGC  1099
      | |||| ||| ||||||  |||||||||||| |||||||| ||||| |||
seq2  A-CAGC-AGT-CTCAGG--TGTCCTCTCACT-GGATGCATTGTTTT-AGC  1086

seq1  TTTTTACTCGG  1110
        |||||||||
seq2  --TTTACTCGG  1095