BAC Information

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BAC

Clone NameB6Ng01-082N03
Chromosome2 (Build37)1 (Build37)
Map Location 142,777,222 - 142,777,69847,871,181 - 47,872,436
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N03.bB6Ng01-082N03.g
ACCDH897265DH897266
length4781,212
definitionDH897265|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N03, 5' end.DH897266|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,777,222 - 142,777,698)(47,871,181 - 47,872,436)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatgggtttt
gaattcagttgttcagtattgaggttagataacaaaagatgttactccag
acttgccctcagcaagtggaaacaaaagagctggtattattagaaagggg
ctggagatatgaatgtagttatgttatggaatgtttacatttgatttgaa
atagaaaatgagaaaattttatattaagcattcgagtgaagatatcaaat
gagactatgggaaagaactaggtcagtgataaaatggccaaagttaagtg
gtattacaacctataactgagggaatgtagaagaaccaaggactgaggtt
aagggttctataaaagtttggactgtaaaaagggaaggtaaccaaatgag
actgaaaaggaatgaccaggactttaggaagtaaagggtgggcatctttg
gtcccaaatgccaagggaaaatgtgtccttttctcaggtttggtatgtac
atggtgacacatgctcgtaaccccagaaaaggggtcactaacgaggcgtg
tcagaaactcaatatcatcctcaactccctagtgggtttgaagaaaatcg
agcattaataaaatgatatctgaaaacaataacaacaggctcctctatgg
actaatgatatactaattgctctccagtaaagtcacctgagactttatct
atgatcgtcctgaggaagggaaaatttgggggttctcccaggtttgtatt
ctttttgttagtgtatcctaaagcatcctgaacttcttgaaatcctaaca
tttggagctgaagtgatggtttagcagcaaagaactctggttctttcaga
agatgcaggttcaattcctagcacccacatggcagttcacaacctttgtc
actctagaccaagaaagcccaataccctcattattcacagcctccacatg
agcacagagttgattgggtttctttgtattgctaaatttaatttcaatca
gatataccttttggggggacaggagcattgttagcagttaacagcacttt
tgttctttcagaggatttgatcggcttctcagatgatggctcacaactgg
ctgtcattctgactcatgggctgacacttatattggactccacacagctg
cactgacaataaaggttgccatgaccaccaggatttttttcgatgacgtc
tgacgtattacatcgtcataacctctcacacctgaggttcttctttgaca
taacaaaattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142777222_142777698
seq2: B6Ng01-082N03.b_46_523 (reverse)

seq1  -AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  49
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  50

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  100

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  150

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  200

seq1  TGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  250

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  300

seq1  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  349
      |||||||||||| ||| ||||||||||||||||||||||||| |||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  350

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  400

seq1  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  450

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  477
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  478

seq1: chr1_47871181_47872436
seq2: B6Ng01-082N03.g_69_1280

seq1  GAATTCAGTTGTTCAGTATTGAGGTTAGATAACAAAAGATGTTACTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTTCAGTATTGAGGTTAGATAACAAAAGATGTTACTCCAG  50

seq1  ACTTGCCCTCAGCAAGTGGAAACAAAAGAGCTGGTATTATTAGAAAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCTCAGCAAGTGGAAACAAAAGAGCTGGTATTATTAGAAAGGGG  100

seq1  CTGGAGATATGAATGTAGTTATGTTATGGAATGTTTACATTTGATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATATGAATGTAGTTATGTTATGGAATGTTTACATTTGATTTGAA  150

seq1  ATAGAAAATGAGAAAATTTTATATTAAGCATTCGAGTGAAGATATCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATGAGAAAATTTTATATTAAGCATTCGAGTGAAGATATCAAAT  200

seq1  GAGACTATGGGAAAGAACTAGGTCAGTGATAAAATGGCCAAAGTTAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATGGGAAAGAACTAGGTCAGTGATAAAATGGCCAAAGTTAAGTG  250

seq1  GTATTACAACCTATAACTGAGGGAATGTAGAAGAACCAAGGACTGAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACAACCTATAACTGAGGGAATGTAGAAGAACCAAGGACTGAGGTT  300

seq1  AAGGGTTCTATAAAAGTTTGGACTGTAAAAAGGGAAGGTAACCAAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCTATAAAAGTTTGGACTGTAAAAAGGGAAGGTAACCAAATGAG  350

seq1  ACTGAAAAGGAATGACCAGGACTTTAGGAAGTAAAGGGTGGGCATCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGGAATGACCAGGACTTTAGGAAGTAAAGGGTGGGCATCTTTG  400

seq1  GTCCCAAATGCCAAGGGAAAATGTGTCCTTTTCTCAGGTTTGGTATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAATGCCAAGGGAAAATGTGTCCTTTTCTCAGGTTTGGTATGTAC  450

seq1  ATGGTGACACATGCTCGTAACCCCAGAAAAGGGGTCACTAACGAGGCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACACATGCTCGTAACCCCAGAAAAGGGGTCACTAACGAGGCGTG  500

seq1  TCAGAAACTCAATATCATCCTCAACTCCCTAGTGGGTTTGAAGAAAATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACTCAATATCATCCTCAACTCCCTAGTGGGTTTGAAGAAAATCG  550

seq1  AGCATTAATAAAATGATATCTGAAAACAATAACAACAGGCTCCTCTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAATAAAATGATATCTGAAAACAATAACAACAGGCTCCTCTATGG  600

seq1  ACTAATGATATACTAATTGCTCTCCAGTAAAGTCACCTGAGACTTTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGATATACTAATTGCTCTCCAGTAAAGTCACCTGAGACTTTATCT  650

seq1  ATGATCGTCCTGAGGAAGGGAAAATTTGGGGGTTCTCCCAGGTTTGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCGTCCTGAGGAAGGGAAAATTTGGGGGTTCTCCCAGGTTTGTATT  700

seq1  CTTTTTGTTAGTGTATCCTAAAGCATCCTGAACTTCTTGAAATCCTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTAGTGTATCCTAAAGCATCCTGAACTTCTTGAAATCCTAACA  750

seq1  TTTGGAGCTGAAGTGATGGTTTAGCAGCAAAGAACTCTGGTTCTTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCTGAAGTGATGGTTTAGCAGCAAAGAACTCTGGTTCTTTCAGA  800

seq1  AGATGCAGGTTCAATTCCTAGCACCCACATGGCAGTTCACAACCTTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGGTTCAATTCCTAGCACCCACATGGCAGTTCACAACCTTTGTC  850

seq1  ACTCTAGACCAAGAAAGCCCAATACCCTCATTATTCACAGCCTCCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGACCAAGAAAGCCCAATACCCTCATTATTCACAGCCTCCACATG  900

seq1  AGCACAGAGTTGATTGGTTTTCTTTTGTATTGCTAAAATTTTAATTTTCA  950
      ||||||||||||||||| |||| ||||||||||||||  ||||| |||||
seq2  AGCACAGAGTTGATTGGGTTTC-TTTGTATTGCTAAA--TTTAA-TTTCA  946

seq1  ATCAGGATATACCTTTTGGGGGGACAGGAGGCATTGTTTAGCAGTTAACA  1000
      |||| |||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATCA-GATATACCTTTTGGGGGGACAGGA-GCATTG-TTAGCAGTTAACA  993

seq1  GCACTTTTTGTTCTTTCAGAGGATTTGAATCCGGCTCTCAGATTGTATGG  1050
      |||| |||||||||||||||||||||| ||| |  ||||||||   ||||
seq2  GCAC-TTTTGTTCTTTCAGAGGATTTG-ATCGGCTTCTCAGAT--GATGG  1039

seq1  CTCACAACTGGCTGTCATTCCTGACTCATGGGAGCTGACACCTTATATTT  1100
      ||||||||||||||||||| |||||||||||  ||||||| |||||| ||
seq2  CTCACAACTGGCTGTCATT-CTGACTCATGG--GCTGACA-CTTATA-TT  1084

seq1  GGACTCCACACAGCTGCACTGACAATTACAGTTTTGCACATAGACACACA  1150
      |||||||||||||||||||||||||| |  |  |||| ||| |||   ||
seq2  GGACTCCACACAGCTGCACTGACAATAAAGG--TTGC-CAT-GAC---CA  1127

seq1  CAAAAGATTTTTTTTTTTTAGATTTGACATTTTCTTTGACTGATTTATCA  1200
      |  | ||     ||||||| ||  ||||         | ||||  ||| |
seq2  C-CAGGA-----TTTTTTTCGA--TGAC---------GTCTGACGTATTA  1160

seq1  ATTCCTTCTATTGTATCTTCTACACCTGAGGTTC-TCTCTTGCATCTACA  1249
        || |  ||    | ||   ||||||||||||| ||| |  |||  |||
seq2  CATCGTCATA----ACCTCTCACACCTGAGGTTCTTCTTTGACAT-AACA  1205

seq1  AAATTCC  1256
      |||||||
seq2  AAATTCC  1212