BAC Information

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BAC

Clone NameB6Ng01-082N23
Chromosome5 (Build37)2 (Build37)
Map Location 18,084,511 - 18,084,5678,964,176 - 8,965,306
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N23.bB6Ng01-082N23.g
ACCDH897300DH897301
length9231,125
definitionDH897300|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N23, 5' end.DH897301|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,567)(8,964,176 - 8,965,306)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggag
ggattgcaagcttgtacaaccactctgggaatcagtctggcggttcctca
gaatattggacatagtaataccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccaataagaaggacacatgctctactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcgttctgagtgaggtaacccaatcacaaa
ggaactcacaatatgtactcactgataagtggatattagcccagaaattt
aggatacccaagatataagatacaatttgctaaacgcatgaaactcaaga
agaacgaagaccaaagtgtgaacactttgccccttcttagaattgggaac
aaatcacccatggaaggagttacagagaaaatgtttggagctgtgatgaa
aggatggaccatctagagactgccatatccggggatccatcccacaatca
gcttccaaaagctgacaccatggcatacactagcaagattttgctgaaag
gacccagatagagctctctcttgtgagactatgcctgagcctagcaaaca
cagaaatggatgctcatagtcag
gaattctttagttggagactgaccaccaattgagtgatattttattttgt
tttattttaccttgaacagaaactgtcttttaaaatgcatgccatgaata
aaagttatgaaatattttataattgacaacagttcagcaataaaatatta
tgaacaattgattacccacaacaattaaaatacatcctagagattaatgg
tgcttgagctgcagagatgactctgtggttaagagcacatactgcttttc
cagaggacctgagtttagtttgggcagctcacagcaacctgtaattcagg
ttgtagggaatctgacatcttctctgtgtctcctggaagcctgctctctc
atgctcatagccacacatataccccccacacacatacatacatacataca
catgtatgtgtgtgtgctctgtactgtgtacatattcctttaggctttca
ttatcaatgttttctaagtctttgttctggttggtattactctatttcta
tacctgtaatgtaaagagtgtatcttttcatgacactccgaagctctact
atatgccattcatatgcattttttaaatcattggcttttattgagtgatt
ttcatttttgtcttttttattacatcttattttcaaaacctgatattcag
tttcctgcacattccagtctatggaagaggctttcttctgaactattttt
tatcttatcaagtttccccccacaaattgcagttcaattgtttttcaata
ttttttattgaaatatattagtatgtcatgaattgattttaaaaatttta
ctcaactctgtttttgttttccaagtcaaataacatttttaaagttttgt
aacatagttataattgtaatttcatacactttgtctggaagttccttcaa
ctcattagtattggctgctattgtactaataatttttgaaaacatatttt
gaatttgtatactgtttttgtttgtgcccaggacttgtacattaaaacta
gtatgtctctcactgcgcagtccggtggagtttcgctggagcagaccccg
tggggggtgggtcgccgggtggcctcgcagcggcggctccgccacttcct
gtggcgtccctcttgaccctaccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084567
seq2: B6Ng01-082N23.b_377_433 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTAGAGCATGTGTC  50

seq1  CTTCTTA  57
      |||||||
seq2  CTTCTTA  57

seq1: chr2_8964176_8965306
seq2: B6Ng01-082N23.g_69_1193 (reverse)

seq1  GCGGTGAGGGCCAAGAAGGGGGACGC--CAGGGAGTGGGCGGAGCCGCCG  48
      ||||| |||| |||||   |||||||  |||| ||| |||||||||||||
seq2  GCGGT-AGGGTCAAGA---GGGACGCCACAGGAAGT-GGCGGAGCCGCCG  45

seq1  CTGCGGAAGGCCACCCGCGAACCCA--CCCCACGGGGTTCCTGCTCCAGC  96
      |||||  ||||||||||   |||||  |||||||||||  ||||||||||
seq2  CTGCG--AGGCCACCCGGCGACCCACCCCCCACGGGGT--CTGCTCCAGC  91

seq1  G-AACTCCACCGGACTGCGCAGTGAGAGAACATACTAGTTTTAATGTACA  145
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAACTCCACCGGACTGCGCAGTGAGAG-ACATACTAGTTTTAATGTACA  140

seq1  AGTCCTGGGGCACAAACAAAAACAGTATACAAATTCAAAATATGTTTTCA  195
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCT-GGGCACAAACAAAAACAGTATACAAATTCAAAATATGTTTTCA  189

seq1  AAAATTATTAGTACAATAGCAGCCAATACTAATGAGTTGAAGGAACTTCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTAGTACAATAGCAGCCAATACTAATGAGTTGAAGGAACTTCC  239

seq1  AGACAAAGTGTATGAAATTACAATTATAACTATGTTACAAAACTTTAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGTGTATGAAATTACAATTATAACTATGTTACAAAACTTTAAAA  289

seq1  ATGTTATTTGACTTGGAAAACAAAAACAGAGTTGAGTAAAATTTTTAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTGACTTGGAAAACAAAAACAGAGTTGAGTAAAATTTTTAAAA  339

seq1  TCAATTCATGACATACTAATATATTTCAATAAAAAATATTGAAAAACAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCATGACATACTAATATATTTCAATAAAAAATATTGAAAAACAAT  389

seq1  TGAACTGCAATTTGTGGGGGGAAACTTGATAAGATAAAAAATAGTTCAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGCAATTTGTGGGGGGAAACTTGATAAGATAAAAAATAGTTCAGA  439

seq1  AGAAAGCCTCTTCCATAGACTGGAATGTGCAGGAAACTGAATATCAGGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTCTTCCATAGACTGGAATGTGCAGGAAACTGAATATCAGGTT  489

seq1  TTGAAAATAAGATGTAATAAAAAAGACAAAAATGAAAATCACTCAATAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAAGATGTAATAAAAAAGACAAAAATGAAAATCACTCAATAAA  539

seq1  AGCCAATGATTTAAAAAATGCATATGAATGGCATATAGTAGAGCTTCGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGATTTAAAAAATGCATATGAATGGCATATAGTAGAGCTTCGGA  589

seq1  GTGTCATGAAAAGATACACTCTTTACATTACAGGTATAGAAATAGAGTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGAAAAGATACACTCTTTACATTACAGGTATAGAAATAGAGTAA  639

seq1  TACCAACCAGAACAAAGACTTAGAAAACATTGATAATGAAAGCCTAAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCAGAACAAAGACTTAGAAAACATTGATAATGAAAGCCTAAAGG  689

seq1  AATATGTACACAGTACAGAGCACACACACATACATGTGTATGTATGTATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACACAGTACAGAGCACACACACATACATGTGTATGTATGTATG  739

seq1  TATGTGTGTGGGGGGTATATGTGTGGCTATGAGCATGAGAGAGCAGGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGGGGGGTATATGTGTGGCTATGAGCATGAGAGAGCAGGCTT  789

seq1  CCAGGAGACACAGAGAAGATGTCAGATTCCCTACAACCTGAATTACAGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGACACAGAGAAGATGTCAGATTCCCTACAACCTGAATTACAGGT  839

seq1  TGCTGTGAGCTGCCCAAACTAAACTCAGGTCCTCTGGAAAAGCAGTATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAGCTGCCCAAACTAAACTCAGGTCCTCTGGAAAAGCAGTATGT  889

seq1  GCTCTTAACCACAGAGTCATCTCTGCAGCTCAAGCACCATTAATCTCTAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCACAGAGTCATCTCTGCAGCTCAAGCACCATTAATCTCTAG  939

seq1  GATGTATTTTAATTGTTGTGGGTAATCAATTGTTCATAATATTTTATTGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTTTAATTGTTGTGGGTAATCAATTGTTCATAATATTTTATTGC  989

seq1  TGAACTGTTGTCAATTATAAAATATTTCATAACTTTTATTCATGGCATGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTTGTCAATTATAAAATATTTCATAACTTTTATTCATGGCATGC  1039

seq1  ATTTTAAAAGACAGTTTCTGTTCAAGGTAAAATAAAACAAAATAAAATAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGACAGTTTCTGTTCAAGGTAAAATAAAACAAAATAAAATAT  1089

seq1  CACTCAATTGGTGGTCAGTCTCCAACTAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  CACTCAATTGGTGGTCAGTCTCCAACTAAAGAATTC  1125