BAC Information

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BAC

Clone NameB6Ng01-086I23
Chromosome2 (Build37)
Map Location 78,110,021 - 78,111,144
singlet/doubletsinglet
Overlap geneOTTMUSG00000016703
Upstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I23.bB6Ng01-086I23.g
ACCDH899921DH899922
length1,1381,183
definitionDH899921|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I23, 5' end.DH899922|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcacactgtattttgatcatagtcatatccagaaatttttcat
aaatatcttttttaagcccaccaaggccaattagtgttgcccaaatatta
ttgatatgggcccaactgccacaaatcatacctttaaagaaaactgagtt
tctgtatcccagccgctgttatttgccagtggctccacagctagctagcg
gtcggacttcatgcttaccttcacactgggttttgtctgtcttgactttg
aacagaacttatgcatgctgtcatattcagtgtgagttgacttagagcag
atcttatgcatgctgttgataccactgtgagttcatgtgtgtaactgcct
tgtatctagaaaacagtttccttttattcatctaccacccctatctctta
caatctctccacccaattttcggagatgatctttgtgccttgagagaggg
ttgtggtatagctgcctcactgaaggctgagctctacagtctcttagtct
ctgaatgttgaccagatgctagtctttgtgttaatttccatgtatgcaag
ggggagcttctctgatgtgggttgagaaatgcactgatctctgtgtgtaa
caataagttttggcactaatatcagtgccagccaggtatgagctccatcc
catggagcagatcttaaatctaatcagtaaattctttgtttcattctgtg
atgttcatgccactattgcaacagtggacagatcttgccaagacagttac
tattatggctaagaaggcttgcaccttgttaagatcaatgtttgattttt
tttttcctctggtagttgacataacaccttctagtacgatgagagctagt
caggatggataaaacttgtaagtatccacttgatttctccattctttatg
acttaagtatgctgtatcttcaccaataagtcttaccatcaagttcttaa
gagtaaccagagaacaatgacaacaatgtgtcatgtggtaaggtctatta
gggtttcaaaatagccagaaacaccaaaaggatgcttgtttttttagtac
taggccaaataaaaagcatgtatggatcctggatagggcattactccctc
cccccccccaaattacagggaaaagcttcaatttaaat
gaattcaaagaatgttttagcggagggtagagggctaaaggaagaagacc
tctgaaatatatggagctcaataaatgtggggaatgtaaaggaaggttaa
cacattgaccaaacaagcaaacaaacagtttagagacagctatggaatca
gaacaccaggtgttagctttgcatgcctcatatctgtgtccttgaacaag
ctgcataccttctttgtgcctcagtttccccatcttctatattaaagtat
ctggatgctatagtatgaatctgatttgtctctcaggatcccatgtacca
agactcagtctccaacttgtggtaagaagtcatggagcctttagaagaca
gtaccacataaacagaagttgggagacagggtgatgcccttgaaggctat
cctaggaccccagtcccttggttttcctctttgctcccatcatgatgttc
tgccttcacagccaacccaacaaagcctcatgaccatggcttagaatgct
caaaattgtgaggaaaagtaagtctctctttttccctttaaattgcctat
ctcaggtatttattccagtaacaaaaatgcttttgttgaagtacttattt
ctctaaggttttttgtttttgttctgtttcgttttgctttgctttgcttt
gtttttgttttctttctttctttttttgttgttttttgttttgtttttgt
gggagggcaaatcaaagtaatggacatgtcaattttatgagaggcttcct
tagaatggctgtgcttttatgtccttcactgtcaagaggagatccagctt
gacctcatacatgtcctcccttgccttgggtcctactctttttttttttc
cattttttttaggtatttaactcatttacatttccaatgctataccaaaa
gtcccccatatccacccacccccacttccctgcccacccactcccccttt
ttggccctggtgtcccctgtactggggcataataaaggtttgcaggtcca
ttggcctcctctttccagtgatgggcgactaggcatcttttggatttata
tgcagcttagaagtcaagagctccgggtactgatagtcatatgtgttcca
ctatcggttgcagaatcttagctcttggctaccttcctaactcctcatgg
ggacgctcgatgtaacgtcactccatcatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78110021_78111144
seq2: B6Ng01-086I23.b_50_1187

seq1  GAATTCTTCACACTGTATTTTGATCATAGTCATATCCAGAAATTTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACACTGTATTTTGATCATAGTCATATCCAGAAATTTTTCAT  50

seq1  AAATATCTTTTTTAAGCCCACCAAGGCCAATTAGTGTTGCCCAAATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTTTTAAGCCCACCAAGGCCAATTAGTGTTGCCCAAATATTA  100

seq1  TTGATATGGGCCCAACTGCCACAAATCATACCTTTAAAGAAAACTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGGGCCCAACTGCCACAAATCATACCTTTAAAGAAAACTGAGTT  150

seq1  TCTGTATCCCAGCCGCTGTTATTTGCCAGTGGCTCCACAGCTAGCTAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCCAGCCGCTGTTATTTGCCAGTGGCTCCACAGCTAGCTAGCG  200

seq1  GTCGGACTTCATGCTTACCTTCACACTGGGTTTTGTCTGTCTTGACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGACTTCATGCTTACCTTCACACTGGGTTTTGTCTGTCTTGACTTTG  250

seq1  AACAGAACTTATGCATGCTGTCATATTCAGTGTGAGTTGACTTAGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTTATGCATGCTGTCATATTCAGTGTGAGTTGACTTAGAGCAG  300

seq1  ATCTTATGCATGCTGTTGATACCACTGTGAGTTCATGTGTGTAACTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGCATGCTGTTGATACCACTGTGAGTTCATGTGTGTAACTGCCT  350

seq1  TGTATCTAGAAAACAGTTTCCTTTTATTCATCTACCACCCCTATCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAGAAAACAGTTTCCTTTTATTCATCTACCACCCCTATCTCTTA  400

seq1  CAATCTCTCCACCCAATTTTCGGAGATGATCTTTGTGCCTTGAGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTCCACCCAATTTTCGGAGATGATCTTTGTGCCTTGAGAGAGGG  450

seq1  TTGTGGTATAGCTGCCTCACTGAAGGCTGAGCTCTACAGTCTCTTAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTATAGCTGCCTCACTGAAGGCTGAGCTCTACAGTCTCTTAGTCT  500

seq1  CTGAATGTTGACCAGATGCTAGTCTTTGTGTTAATTTCCATGTATGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTGACCAGATGCTAGTCTTTGTGTTAATTTCCATGTATGCAAG  550

seq1  GGGGAGCTTCTCTGATGTGGGTTGAGAAATGCACTGATCTCTGTGTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTTCTCTGATGTGGGTTGAGAAATGCACTGATCTCTGTGTGTAA  600

seq1  CAATAAGTTTTGGCACTAATATCAGTGCCAGCCAGGTATGAGCTCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGTTTTGGCACTAATATCAGTGCCAGCCAGGTATGAGCTCCATCC  650

seq1  CATGGAGCAGATCTTAAATCTAATCAGTAAATTCTTTGTTTCATTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCAGATCTTAAATCTAATCAGTAAATTCTTTGTTTCATTCTGTG  700

seq1  ATGTTCATGCCACTATTGCAACAGTGGACAGATCTTGCCAAGACAGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGCCACTATTGCAACAGTGGACAGATCTTGCCAAGACAGTTAC  750

seq1  TATTATGGCTAAGAAGGCTTGCACCTTGTTAAGATCAATGTTTGA-TTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTATGGCTAAGAAGGCTTGCACCTTGTTAAGATCAATGTTTGATTTTT  800

seq1  TTTTTCCTCTGGTAGTTGACATAACACCTTCTAGTACGATGAGAGCTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTGGTAGTTGACATAACACCTTCTAGTACGATGAGAGCTAGT  850

seq1  CAGGATGGATAAAACTTGTAAGTATCCACTTGATTTCTCCATTCTTTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGATAAAACTTGTAAGTATCCACTTGATTTCTCCATTCTTTATG  900

seq1  ACTTAAGTATGCTGTATCTTCACCAATAAGGTCTTACCATCAAGTTCTTA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTTAAGTATGCTGTATCTTCACCAATAA-GTCTTACCATCAAGTTCTTA  949

seq1  AGAGTAA-CAGAGAACAATGACAACAATGTGTCATGTGGT-AGGTCTA-T  996
      ||||||| |||||||||||||||||||||||||||||||| ||||||| |
seq2  AGAGTAACCAGAGAACAATGACAACAATGTGTCATGTGGTAAGGTCTATT  999

seq1  AGGG-TTCCAAATAGCCAGAAACACAAAAGGGATGCT--GTTTTTTAGTA  1043
      |||| ||| |||||||||||||||| ||| |||||||   ||||||||||
seq2  AGGGTTTCAAAATAGCCAGAAACACCAAAAGGATGCTTGTTTTTTTAGTA  1049

seq1  CTAGGGCAAATAAAAAGCATGTAT-GAT-CTTGATAGGGCATTACTC---  1088
      ||||| |||||||||||||||||| ||| || |||||||||||||||   
seq2  CTAGGCCAAATAAAAAGCATGTATGGATCCTGGATAGGGCATTACTCCCT  1099

seq1  CCCCCCCCCCCAATTACAGG--ATAGC-TCAATTTAAAT  1124
      |||||||||| |||||||||  | ||| |||||||||||
seq2  CCCCCCCCCCAAATTACAGGGAAAAGCTTCAATTTAAAT  1138