BAC Information

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BAC

Clone NameB6Ng01-088I09
Chromosome2 (Build37)
Map Location 34,333,771 - 34,539,548
singlet/doubletdoublet
Overlap geneMapkap1, LOC623448, LOC623269, Gapvd1
Upstream geneLOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948
Downstream geneHspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I09.bB6Ng01-088I09.g
ACCDH901351DH901352
length1,0361,073
definitionDH901351|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I09, 5' end.DH901352|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,538,507 - 34,539,548)(34,333,771 - 34,334,851)
sequence
gaattcagagagccttgctgagcatctctgcctgccgtgtgcctgcctca
cgtggtcttctgtgtcttctgtgggatgagttgtttgatcttgacccagg
catccctttcttaggaacccatttcctttctagcttaaattgctcaggtt
tacacagttgtttcatagttgtcatttgccatatgtttgagtcatgattt
cttcttttctttaaaggtttattttctcttctatgtattattgtttggtc
tgcatgtgcaccacgtgcatgccatcagaggtcagagagggcagcagatc
ctctggaactggagtttcaggtggttgtgagctgccctgtagatggtgag
aaccaaaccaagttcccttcaagggtagccagtacttgtagctgagtacc
ctaagccatttccagaccctgagtcatagtttgttaacccaatggccctg
aaatttggagcctagtagttatttgatctatgagcctattctgtggtagg
tgtttagcagcactcatgatccaaccagttatggcaactgactctagata
ttgctagactgtccctcatttatgcctctcccgctgttagggcttttgca
tatttgacaagcactcttctctgtgggctggggaatgtgcatatggtcag
caacatgtgtcttcttaggtgtctcgtgaacccagggccctataattcag
ttacctactgtgtctaccattgcagcgctgggcggataggcatgcaccga
ggctaagtatccaaccaggccctcattctcactttgcaagtactttccca
gttaggccatctgcccaagcctccctgggtttttgtttgtttgtttgttt
gtttgtttgtttgtttttgagaaatccatccctgttgggacgaggtgggg
tagaaaagtagggtgtagagacttttggcttttgtgttttctcggttttc
tatttctgattctccatgatctgattctaccccaaacataccgacatgtt
ggcacatgttttctagcaaagacaatgacttggtgc
gaattcttactgtccccgtgttttggacagggtctcactatgtagctatg
gctggcttggaactcattatgtagaacttgttagccttaaactcctacgt
gctggtttaaaggttgttccacccaccacacctagttttgcattgctagt
gccattttcctctctgtttactctgtacatcagaggatttgaggagttag
aggaaaacacagacaaatgaaaaggcagtcaagaaactttgctgcctttt
tcatggccaaaagagttgcctatggcatctaggagcacagcagctatctg
atgaaaactttaggttttttcttgggaaatgttttttttttttttttttt
tttttccctagtagcactgtggccagagaggagcagtgtactcaagtaac
ccagctcagtgggacttgctgtgttgttctctcactcgctgcaggtgctg
tctgaaaccttgccctccccgaggcccactgttacctccgctactcacaa
gggccaaagattgatttgtaagtcatttgctgtttgtcttcacacagctt
tattaagtacaaaataagtaatgttgtattggatggaggcagtttaagtt
ggctgagaatgcaggctctggaggcttgcatccccacctttaccatctgt
cacttcaggcaggtcacttccctgcaaagtaggaagaatgggtgactgtc
catcacagagctgtttgagatttgtacatagtcactgtgtatgtcattca
cagcacagtgggacccacagtagtgtttaataagtaccagctactgtagt
attggagtcagagagaggttttaagaacacctttgtatcctggctgtctt
cctttgataagagtgaagttcactctgttctgaatggtgtcactcatttc
ttcagctcgctcataatacttagtgtcttagtctctagaatattgccata
tgaaaatagtctcgtagctcataaatgatggattgcagcaggttttgttg
gattcagcttcataatctagcgcgggtggagttctgctgcctgcatgaat
ggtgtttctctttctaggaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34538507_34539548
seq2: B6Ng01-088I09.b_47_1082 (reverse)

seq1  GCACCAAAGTCATTGTCATTTGCTAGAAAACATGGTGACAACATGGTCGG  50
      ||||| ||||||||||| ||||||||||||||| ||| |||||| |||||
seq2  GCACC-AAGTCATTGTC-TTTGCTAGAAAACAT-GTGCCAACAT-GTCGG  46

seq1  TATGTTTGGGGGTAGAATCAGGATCATGGAGAATACAG-AATAGAAAACA  99
      ||||||| |||||||||||| ||||||||||||| ||| |||||||||| 
seq2  TATGTTT-GGGGTAGAATCA-GATCATGGAGAAT-CAGAAATAGAAAACC  93

seq1  GAAGAAAAACACAAAAGCC-AAAGTCTCTACACCCTACTTTTCTACCCCA  148
      ||   |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GA--GAAAACACAAAAGCCAAAAGTCTCTACACCCTACTTTTCTACCCCA  141

seq1  CCTCGTCCCAACA-GGATGGATTTCTCAAAAACAAACAAACAAACAAACA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCCCAACAGGGATGGATTTCTCAAAAACAAACAAACAAACAAACA  191

seq1  AACAAACAAACAAAAACCCAGGGAGGCTTGGGCAGATGGCCTAACTGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAACCCAGGGAGGCTTGGGCAGATGGCCTAACTGGGA  241

seq1  AAGTACTTGCAAAGTGAGAATGAGGGCCTGGTTGGATACTTAGCCTCGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTGCAAAGTGAGAATGAGGGCCTGGTTGGATACTTAGCCTCGGT  291

seq1  GCATGCCTATCCGCCCAGCGCTGCAATGGTAGACACAGTAGGTAACTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTATCCGCCCAGCGCTGCAATGGTAGACACAGTAGGTAACTGAA  341

seq1  TTATAGGGCCCTGGGTTCACGAGACACCTAAGAAGACACATGTTGCTGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGCCCTGGGTTCACGAGACACCTAAGAAGACACATGTTGCTGAC  391

seq1  CATATGCACATTCCCCAGCCCACAGAGAAGAGTGCTTGTCAAATATGCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACATTCCCCAGCCCACAGAGAAGAGTGCTTGTCAAATATGCAA  441

seq1  AAGCCCTAACAGCGGGAGAGGCATAAATGAGGGACAGTCTAGCAATATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTAACAGCGGGAGAGGCATAAATGAGGGACAGTCTAGCAATATCT  491

seq1  AGAGTCAGTTGCCATAACTGGTTGGATCATGAGTGCTGCTAAACACCTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTTGCCATAACTGGTTGGATCATGAGTGCTGCTAAACACCTAC  541

seq1  CACAGAATAGGCTCATAGATCAAATAACTACTAGGCTCCAAATTTCAGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATAGGCTCATAGATCAAATAACTACTAGGCTCCAAATTTCAGGG  591

seq1  CCATTGGGTTAACAAACTATGACTCAGGGTCTGGAAATGGCTTAGGGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGGTTAACAAACTATGACTCAGGGTCTGGAAATGGCTTAGGGTAC  641

seq1  TCAGCTACAAGTACTGGCTACCCTTGAAGGGAACTTGGTTTGGTTCTCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACAAGTACTGGCTACCCTTGAAGGGAACTTGGTTTGGTTCTCAC  691

seq1  CATCTACAGGGCAGCTCACAACCACCTGAAACTCCAGTTCCAGAGGATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACAGGGCAGCTCACAACCACCTGAAACTCCAGTTCCAGAGGATCT  741

seq1  GCTGCCCTCTCTGACCTCTGATGGCATGCACGTGGTGCACATGCAGACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCTCTGACCTCTGATGGCATGCACGTGGTGCACATGCAGACCA  791

seq1  AACAATAATACATAGAAGAGAAAATAAACCTTTAAAGAAAAGAAGAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATACATAGAAGAGAAAATAAACCTTTAAAGAAAAGAAGAAATC  841

seq1  ATGACTCAAACATATGGCAAATGACAACTATGAAACAACTGTGTAAACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAAACATATGGCAAATGACAACTATGAAACAACTGTGTAAACCT  891

seq1  GAGCAATTTAAGCTAGAAAGGAAATGGGTTCCTAAGAAAGGGATGCCTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTTAAGCTAGAAAGGAAATGGGTTCCTAAGAAAGGGATGCCTGG  941

seq1  GTCAAGATCAAACAACTCATCCCACAGAAGACACAGAAGACCACGTGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATCAAACAACTCATCCCACAGAAGACACAGAAGACCACGTGAGG  991

seq1  CAGGCACACGGCAGGCAGAGATGCTCAGCAAGGCTCTCTGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACGGCAGGCAGAGATGCTCAGCAAGGCTCTCTGAATTC  1036

seq1: chr2_34333771_34334851
seq2: B6Ng01-088I09.g_67_1139

seq1  GAATTCTTACTGTCCCCGTGTTTTGGACAGGGTCTCACTATGTAGCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGTCCCCGTGTTTTGGACAGGGTCTCACTATGTAGCTATG  50

seq1  GCTGGCTTGGAACTCATTATGTAGAACTTGTTAGCCTTAAACTCCTACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTGGAACTCATTATGTAGAACTTGTTAGCCTTAAACTCCTACGT  100

seq1  GCTGGTTTAAAGGTTGTTCCACCCACCACACCTAGTTTTGCATTGCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTAAAGGTTGTTCCACCCACCACACCTAGTTTTGCATTGCTAGT  150

seq1  GCCATTTTCCTCTCTGTTTACTCTGTACATCAGAGGATTTGAGGAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTCCTCTCTGTTTACTCTGTACATCAGAGGATTTGAGGAGTTAG  200

seq1  AGGAAAACACAGACAAATGAAAAGGCAGTCAAGAAACTTTGCTGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACAGACAAATGAAAAGGCAGTCAAGAAACTTTGCTGCCTTTT  250

seq1  TCATGGCCAAAAGAGTTGCCTATGGCATCTAGGAGCACAGCAGCTATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCAAAAGAGTTGCCTATGGCATCTAGGAGCACAGCAGCTATCTG  300

seq1  ATGAAAACTTTAGGTTTTTTCTTGGGAAATGTTTTTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTTTAGGTTTTTTCTTGGGAAATGTTTTTTTTTTTTTTTTTTT  350

seq1  TTTTTCCCTAGTAGCACTGTGGCCAGAGAGGAGCAGTGTACTCAAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTAGTAGCACTGTGGCCAGAGAGGAGCAGTGTACTCAAGTAAC  400

seq1  CCAGCTCAGTGGGACTTGCTGTGTTGTTCTCTCACTCGCTGCAGGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCAGTGGGACTTGCTGTGTTGTTCTCTCACTCGCTGCAGGTGCTG  450

seq1  TCTGAAACCTTGCCCTCCCCGAGGCCCACTGTTACCTCCGCTACTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCTTGCCCTCCCCGAGGCCCACTGTTACCTCCGCTACTCACAA  500

seq1  GGGCCAAAGATTGATTTGTAAGTCATTTGCTGTTTGTCTTCACACAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAAGATTGATTTGTAAGTCATTTGCTGTTTGTCTTCACACAGCTT  550

seq1  TATTAAGTACAAAATAAGTAATGTTGTATTGGATGGAGGCAGTTTAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTACAAAATAAGTAATGTTGTATTGGATGGAGGCAGTTTAAGTT  600

seq1  GGCTGAGAATGCAGGCTCTGGAGGCTTGCATCCCCACCTTTACCATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAATGCAGGCTCTGGAGGCTTGCATCCCCACCTTTACCATCTGT  650

seq1  CACTTCAGGCAGGTCACTTCCCTGCAAAGTAGGAAGAATGGGTGACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGGCAGGTCACTTCCCTGCAAAGTAGGAAGAATGGGTGACTGTC  700

seq1  CATCACAGAGCTGTTTGAGATTTGTACATAGTCACTGTGTATGTCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAGCTGTTTGAGATTTGTACATAGTCACTGTGTATGTCATTCA  750

seq1  CAGCACAGTGGGACCCACAGTAGTGTTTAATAAGTACCAGCTACTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGTGGGACCCACAGTAGTGTTTAATAAGTACCAGCTACTGTAGT  800

seq1  ATTGGAGTCAGAGAGAGGTTTTTAAGAACACCTTTGTATCCTGGCTGTCT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTGGAGTCAGAGAGAGG-TTTTAAGAACACCTTTGTATCCTGGCTGTCT  849

seq1  TCCTTTGATAAGAGTGAAGTTCACTCTGTTTCTGAATGGTGTCACTCATT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCTTTGATAAGAGTGAAGTTCACTCTG-TTCTGAATGGTGTCACTCATT  898

seq1  TCTCCAGCTCGCTCATAATACTTAGTGTCTTAGTCTCTAGAATATTGCCA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTCGCTCATAATACTTAGTGTCTTAGTCTCTAGAATATTGCCA  948

seq1  TATGAAATTAGTCTTCGTAGCTCATAAATGATTGAATGCCAGCA-GTTTT  999
      ||||||| ||||| |||||||||||||||||| || || ||||| |||||
seq2  TATGAAAATAGTC-TCGTAGCTCATAAATGATGGATTG-CAGCAGGTTTT  996

seq1  GTGTGATTCAGCTTCATAATCTAGCCGCGGTTGAGTTTCTGCTGCCTGCT  1049
      ||  |||||||||||||||||||| ||||| ||   ||||||||||||| 
seq2  GTTGGATTCAGCTTCATAATCTAG-CGCGGGTGGAGTTCTGCTGCCTGCA  1045

seq1  AGAATGTGTGTTTTTCTCTTTCTAGGAAGGAT  1081
       |||||   || |||||||||||||| |||||
seq2  TGAATG---GTGTTTCTCTTTCTAGG-AGGAT  1073