BAC Information

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BAC

Clone NameB6Ng01-088I14
Chromosome2 (Build37)
Map Location 38,431,811 - 38,542,100
singlet/doubletdoublet
Overlap geneNek6, Psmb7, LOC674251
Upstream gene6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
Downstream geneNr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I14.bB6Ng01-088I14.g
ACCDH901361DH901362
length1,227861
definitionDH901361|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I14, 5' end.DH901362|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,431,811 - 38,432,928)(38,541,241 - 38,542,100)
sequence
gaattccacagggagagtctataatgggaagcatggaagctgttggctag
ttttatgtcaacgtgacacaaactagagccatcagagtcctgggagcctc
aactgagaaaatgcttcaataagatcaggctgtaggcaggtctgtaaggc
attttcttaattagtgattgacgtgggagggcccagcccactgggggtgg
tgctatccctgggctggtggtcctgggttctataagaaagaggccctcca
tggcctctgcatcagctcctgcctccaggttccagccccaatgagtttct
gtcctgatttccttcagtgggggacactgttgtggaagtatacgccaaat
aaaccttttcctccctagtttgttttggtcatggtgtctcttcacagtaa
cagaacagtgactaagatagaagcagacagccagagcgggaactgagagt
atgatgaggctgtaaactcttagaccatgcccccatgacatccttccttc
acatggttgtactggtaaaggttccattgcctccccatcatctgtaatgg
atctacatcacctggggattgagcacctgagcctgtgggaacatttctca
ctcaaaccatcacatcctggcttgccatccagctctcagtggcatctttg
gtgaactgaaagacttcatcaccgtgaagttgatcattttaatggctctt
gcctttacgtaagcctcttggcccgcctgagcgtcagttttccctcatgt
gtctctgtcaacttggacagtggttcttttctgttgggagattgctgtag
actatcccagatacaaattgtcccctgtcgggacagaagtcatttgcctc
tctgcattgagcagtcactttgaatcctggctgtgtggcccctaaccagt
tcttaaatgtagggatcctggggatctacttaaagttcatggggtccaag
tccacttcactgccctattaacatgggcagcatctctgctgaccaaggag
gggacaggctatctcttctcctgaggccagaatcctaagtcccacccttg
ctgtgttgcagtgggaacaccatactacatgtcacccgaaagaattcatg
aaaaatggctacaaactttcagtcagacatctggtcctaagcctgcctgc
tgtattgagtaagtctctaacctgcagcggggtgcctgggaactccatgg
ggcacagtaggacaggtctatcctacc
gaattctctctattcccatgctgctttggctgtcctttgccctctcagcc
tctgtggtaccacactatggataggttgtatgaggtgggcactttggtcc
catgtactatgttctttggggtgtgacccagcaactggcctgggggttgg
gaggatctgtaaagcatgaatgaacgaacacatgaatgaacaaacaaagg
agtccccattcacagagctttggtgtgcaagcattgcgcacagccctttg
taaaggttatttcattggatcaccagaagattccttgaggcacagacttc
aatccccattaggcaggtctaccaaggtagatgtgagctacctcgctaca
gaggtaaggcattgctttccttccatagaaccagacatagtgtgggtcag
aagaaataaaaatcattcctgaataacaagtgaggctggatctgttctgg
tctctctagatctcgttactgtgctggggtatatcctgtctagtttatgc
ccaagacagaaggtcagggcttcgggtatagtggaaagagatacagatac
aggtggtgtgatggaaaggagaggaaaaaagaaaagccaggcctggggat
ggtcacaggcatccaggcgcccaaggacacagcctagaatgaatcaggga
cctgcctgacagcaccacacccacaggaaccaggggcaggccagagaagg
agccacagactgggacaggagagagcttagaagatggaaaagagcccagg
ggcagtgctaggaagaaatatcaacagagaagacagtgatagcctgagag
acagaaggaatcagagaaagttcagaaacaaaagaagccacaggtggggg
ggggggaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38431811_38432928
seq2: B6Ng01-088I14.b_160_1270

seq1  CAATAAGATCAGGCTGTAGGCAGGTCTGTAAGGCATTTTCTTAATTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATCAGGCTGTAGGCAGGTCTGTAAGGCATTTTCTTAATTAGTG  50

seq1  ATTGACGTGGGAGGGCCCAGCCCACTGGGGGTGGTGCTATCCCTGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACGTGGGAGGGCCCAGCCCACTGGGGGTGGTGCTATCCCTGGGCTG  100

seq1  GTGGTCCTGGGTTCTATAAGAAAGAGGCCCTCCATGGCCTCTGCATCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTGGGTTCTATAAGAAAGAGGCCCTCCATGGCCTCTGCATCAGC  150

seq1  TCCTGCCTCCAGGTTCCAGCCCCAATGAGTTTCTGTCCTGATTTCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCCAGGTTCCAGCCCCAATGAGTTTCTGTCCTGATTTCCTTCA  200

seq1  GTGGGGGACACTGTTGTGGAAGTATACGCCAAATAAACCTTTTCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGACACTGTTGTGGAAGTATACGCCAAATAAACCTTTTCCTCCCT  250

seq1  AGTTTGTTTTGGTCATGGTGTCTCTTCACAGTAACAGAACAGTGACTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTTGGTCATGGTGTCTCTTCACAGTAACAGAACAGTGACTAAG  300

seq1  ATAGAAGCAGACAGCCAGAGCGGGAACTGAGAGTATGATGAGGCTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGACAGCCAGAGCGGGAACTGAGAGTATGATGAGGCTGTAAA  350

seq1  CTCTTAGACCATGCCCCCATGACATCCTTCCTTCACATGGTTGTACTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGACCATGCCCCCATGACATCCTTCCTTCACATGGTTGTACTGGT  400

seq1  AAAGGTTCCATTGCCTCCCCATCATCTGTAATGGATCTACATCACCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCATTGCCTCCCCATCATCTGTAATGGATCTACATCACCTGGG  450

seq1  GATTGAGCACCTGAGCCTGTGGGAACATTTCTCACTCAAACCATCACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCACCTGAGCCTGTGGGAACATTTCTCACTCAAACCATCACATC  500

seq1  CTGGCTTGCCATCCAGCTCTCAGTGGCATCTTTGGTGAACTGAAAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCCATCCAGCTCTCAGTGGCATCTTTGGTGAACTGAAAGACTT  550

seq1  CATCACCGTGAAGTTGATCATTTTAATGGCTCTTGCCTTTACGTAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCGTGAAGTTGATCATTTTAATGGCTCTTGCCTTTACGTAAGCCT  600

seq1  CTTGGCCCGCCTGAGCGTCAGTTTTCCCTCATGTGTCTCTGTCAACTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCGCCTGAGCGTCAGTTTTCCCTCATGTGTCTCTGTCAACTTGG  650

seq1  ACAGTGGTTCTTTTCTGTTGGGAGATTGCTGTAGACTATCCCAGATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTTCTTTTCTGTTGGGAGATTGCTGTAGACTATCCCAGATACAA  700

seq1  ATTGTCCCCTGTCGGGACAGAAGTCATTTGCCTCTCTGCATTGAGCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCCTGTCGGGACAGAAGTCATTTGCCTCTCTGCATTGAGCAGTC  750

seq1  ACTTTGAATCCTGGCTGTGTGGCCCCTAACCAGTTCTTAAATGTAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATCCTGGCTGTGTGGCCCCTAACCAGTTCTTAAATGTAGGGAT  800

seq1  CCTGGGGATCTACTTAAAGTTCATGGGGTCCAAGTCCACTTCACTGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGATCTACTTAAAGTTCATGGGGTCCAAGTCCACTTCACTGCCCT  850

seq1  ATTAACATGGGCAGCCATCTCTGCTGACCAAGGAGGGGACAGGCTATCTC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTAACATGGGCAG-CATCTCTGCTGACCAAGGAGGGGACAGGCTATCTC  899

seq1  TTCTCCCTGAGGCCCAGATCCTAAGTCCCACCCCTTGCTGTGTTGCAGTG  950
      |||| |||||||||   ||||||||||||| |||||||||||||||||||
seq2  TTCT-CCTGAGGCCAGAATCCTAAGTCCCA-CCCTTGCTGTGTTGCAGTG  947

seq1  GGAACACCATACTACATGTCACCCGAGAGAATCCATG-AGAATGGCTAC-  998
      |||||||||||||||||||||||||| ||||| |||| | ||||||||| 
seq2  GGAACACCATACTACATGTCACCCGAAAGAATTCATGAAAAATGGCTACA  997

seq1  AACTTCAAGTCAGACATCTGGTCCCTAGGCTGCCTGCTGTATGAGGTAAG  1048
      |||||  |||||||||||||||||  || |||||||||||||   |||||
seq2  AACTTTCAGTCAGACATCTGGTCCTAAGCCTGCCTGCTGTATTGAGTAAG  1047

seq1  TCTCTAACCTGCAGCGTGGTGGCCTGTGGGGACTTCCATGGGGGCACAGG  1098
      |||||||||||||||| ||| ||||   ||||  ||||| |||||||| |
seq2  TCTCTAACCTGCAGCGGGGT-GCCT---GGGAACTCCAT-GGGGCACA-G  1091

seq1  TAAGACAGGCTCATCCTACC  1118
      || ||||||   ||||||||
seq2  TAGGACAGGTCTATCCTACC  1111

seq1: chr2_38541241_38542100
seq2: B6Ng01-088I14.g_65_925 (reverse)

seq1  ATCTT-CCCCCCCCCCACCTGTGGCTTCTTTTGTTTCTGAACTTTCTCTG  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCCCCCCCCCACCTGTGGCTTCTTTTGTTTCTGAACTTTCTCTG  50

seq1  ATTCCTTCTGTCTCTCAGGCTATCACTGTCTTCTCTGTTGATATTTCTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTGTCTCTCAGGCTATCACTGTCTTCTCTGTTGATATTTCTTC  100

seq1  CTAGCACTGCCCCTGGGCTCTTTTCCATCTTCTAAGCTCTCTCCTGTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGCCCCTGGGCTCTTTTCCATCTTCTAAGCTCTCTCCTGTCCC  150

seq1  AGTCTGTGGCTCCTTCTCTGGCCTGCCCCTGGTTCCTGTGGGTGTGGTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGCTCCTTCTCTGGCCTGCCCCTGGTTCCTGTGGGTGTGGTGC  200

seq1  TGTCAGGCAGGTCCCTGATTCATTCTAGGCTGTGTCCTTGGGCGCCTGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCAGGTCCCTGATTCATTCTAGGCTGTGTCCTTGGGCGCCTGGA  250

seq1  TGCCTGTGACCATCCCCAGGCCTGGCTTTTCTTTTTTCCTCTCCTTTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGACCATCCCCAGGCCTGGCTTTTCTTTTTTCCTCTCCTTTCCA  300

seq1  TCACACCACCTGTATCTGTATCTCTTTCCACTATACCCGAAGCCCTGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCACCTGTATCTGTATCTCTTTCCACTATACCCGAAGCCCTGACC  350

seq1  TTCTGTCTTGGGCATAAACTAGACAGGATATACCCCAGCACAGTAACGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTGGGCATAAACTAGACAGGATATACCCCAGCACAGTAACGAG  400

seq1  ATCTAGAGAGACCAGAACAGATCCAGCCTCACTTGTTATTCAGGAATGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGAGACCAGAACAGATCCAGCCTCACTTGTTATTCAGGAATGAT  450

seq1  TTTTATTTCTTCTGACCCACACTATGTCTGGTTCTATGGAAGGAAAGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTCTGACCCACACTATGTCTGGTTCTATGGAAGGAAAGCAA  500

seq1  TGCCTTACCTCTGTAGCGAGGTAGCTCACATCTACCTTGGTAGACCTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTACCTCTGTAGCGAGGTAGCTCACATCTACCTTGGTAGACCTGCC  550

seq1  TAATGGGGATTGAAGTCTGTGCCTCAAGGAATCTTCTGGTGATCCAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGATTGAAGTCTGTGCCTCAAGGAATCTTCTGGTGATCCAATGA  600

seq1  AATAACCTTTACAAAGGGCTGTGCGCAATGCTTGCACACCAAAGCTCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTTACAAAGGGCTGTGCGCAATGCTTGCACACCAAAGCTCTGT  650

seq1  GAATGGGGACTCCTTTGTTTGTTCATTCATGTGTTCGTTCATTCATGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGACTCCTTTGTTTGTTCATTCATGTGTTCGTTCATTCATGCTT  700

seq1  TACAGATCCTCCCAACCCCCAGGCCAGTTGCTGGGTCACACCCCAAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCCTCCCAACCCCCAGGCCAGTTGCTGGGTCACACCCCAAAGAA  750

seq1  CATAGTACATGGGACCAAAGTGCCCACCTCATACAACCTATCCATAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACATGGGACCAAAGTGCCCACCTCATACAACCTATCCATAGTGT  800

seq1  GGTACCACAGAGGCTGAGAGGGCAAAGGACAGCCAAAGCAGCATGGGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACAGAGGCTGAGAGGGCAAAGGACAGCCAAAGCAGCATGGGAAT  850

seq1  AGAGAGAATTC  860
      |||||||||||
seq2  AGAGAGAATTC  861