BAC Information

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BAC

Clone NameB6Ng01-088N04
Chromosome2 (Build37)
Map Location 38,510,308 - 38,652,324
singlet/doubletdoublet
Overlap geneLOC674251, Nr5a1, Nr6a1
Upstream geneLOC639491, Dennd1a, LOC100040947, Lhx2, Nek6, Psmb7
Downstream geneOlfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N04.bB6Ng01-088N04.g
ACCDH901572DH901573
length1,000738
definitionDH901572|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N04, 5' end.DH901573|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,510,308 - 38,511,308)(38,651,592 - 38,652,324)
sequence
gaattccaggatagccaaggctacacagagaaaccctgtctcaaaaaccg
aaaataaaaagcaaacgaaagcaaacaaacaaaaaagtgtgacacagaca
tacagaaaaggcaaatccatcaatcaatccatcaatcaatcaatcaatca
atcatgaggtggaaggggtgaccctgtgagtgcctgaacctaccttgctg
gcagggagcccatgaaaagcctgaggaggaactggaccttttttgagtgt
gagtgcttacttgcagatactccaggttcttagggaaggcaggcagcacc
cagagcagagggcacagcagagtcctgctaggctcctacctacaagacct
caaagtcatcatgtatgtggctctaggttatttgtggtccttgtaactcc
tcatggatgagagtccaaagtcaggaaaggggccagtggcttcccaggac
ccacctcttcatgtcaggctgtcagcctcagcaccagccagaattgcttt
ctcctgagccatggccaagcccagcaatgatatggcagctggttccgatg
ctcgggacacactatagctccctgtggtttttaaagataaaattttatca
catttattattttgtggtgtgtgtgtctgtgcaagtgtctgtatgtgtct
gtgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtgtctgtgtct
gtgtgtctgtgtgtctgtgtctgtgtgtctgtgtgtctgtgtctgtgtgt
ctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgt
ctgtgtctgtgtctgtgtgtctgtctgtgtctgtgtctgtctgtgtctgt
gtgtctgtgtctgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtct
gtgtctgtgtctgtgtctgtgtctgtgtctgtctgtgtctgtgactgtga
cagagtctgtgtctgggctgtggctgtgtgtgtgtctgtgtcagtgtgtc

gaattccttggatattattactgttagtgaagagttggggaaagggacta
cccaaatgactgacagcccagctaaagtctagaatgagagtgtgtaagga
gactggacaatgtgtggtagtctggtttcttacctcatttcctcatcttg
gctattcctctaaagttgtgtcattgttatgcattcatctttgagagaaa
gagcgaatacttctgtaagaagtaatgggactcttgagctatgggatacg
tacagtttagctgccagaactgtaaaacatatccattttctccaaagtaa
aataaaataatcacactatttgccagtctaatgagtggtttatggttccc
tcttatcgccccccacccctgtgtgtgtgtgtgtgtgtgtgtgtgtgttt
gtgtgtgcgagagcgtgtgcgtgtgtgtggttactgtaaggtaaacctag
gtgccctaccactcagctacattcctaactagagaaacagttggtaaaag
ctgaaagtgattttttcattgtatacacactaattttttaaaaagaaatt
tatttatttagctattctggaactcactttgtagaccaggctggcctttg
aactcagaaattcctcctgcctttgcctcccgagtgctggggattaaagg
gagtgcgccaccactgcccagcgagaaatttatttttaatttatgtacgt
gtatattttgcgtgaaagtgatggggccctgacgatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38510308_38511308
seq2: B6Ng01-088N04.b_49_1048

seq1  GAATTCCAGGATAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAACCG  50

seq1  AAAATAAAAAGCAAACGAAAGCAAACAAACAAAAAAGTGTGACACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAGCAAACGAAAGCAAACAAACAAAAAAGTGTGACACAGACA  100

seq1  TACAGAAAAGGCAAATCCATCAATCAATCCATCAATCAATCAATCAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAGGCAAATCCATCAATCAATCCATCAATCAATCAATCAATCA  150

seq1  ATCATGAGGTGGAAGGGGTGACCCTGTGAGTGCCTGAACCTACCTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGGTGGAAGGGGTGACCCTGTGAGTGCCTGAACCTACCTTGCTG  200

seq1  GCAGGGAGCCCATGAAAAGCCTGAGGAGGAACTGGACCTTTTTTGAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGCCCATGAAAAGCCTGAGGAGGAACTGGACCTTTTTTGAGTGT  250

seq1  GAGTGCTTACTTGCAGATACTCCAGGTTCTTAGGGAAGGCAGGCAGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTACTTGCAGATACTCCAGGTTCTTAGGGAAGGCAGGCAGCACC  300

seq1  CAGAGCAGAGGGCACAGCAGAGTCCTGCTAGGCTCCTACCTACAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGAGGGCACAGCAGAGTCCTGCTAGGCTCCTACCTACAAGACCT  350

seq1  CAAAGTCATCATGTATGTGGCTCTAGGTTATTTGTGGTCCTTGTAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATCATGTATGTGGCTCTAGGTTATTTGTGGTCCTTGTAACTCC  400

seq1  TCATGGATGAGAGTCCAAAGTCAGGAAAGGGGCCAGTGGCTTCCCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATGAGAGTCCAAAGTCAGGAAAGGGGCCAGTGGCTTCCCAGGAC  450

seq1  CCACCTCTTCATGTCAGGCTGTCAGCCTCAGCACCAGCCAGAATTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTCATGTCAGGCTGTCAGCCTCAGCACCAGCCAGAATTGCTTT  500

seq1  CTCCTGAGCCATGGCCAAGCCCAGCAATGATATGGCAGCTGGTTCCGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGCCATGGCCAAGCCCAGCAATGATATGGCAGCTGGTTCCGATG  550

seq1  CTCGGGACACACTATAGCTCCCTGTGGTTTTTAAAGATAAAATTTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGACACACTATAGCTCCCTGTGGTTTTTAAAGATAAAATTTTATCA  600

seq1  CATTTATTATTTTGTGGTGTGTGTGTCTGTGCAAGTGTCTGTATGTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTATTTTGTGGTGTGTGTGTCTGTGCAAGTGTCTGTATGTGTCT  650

seq1  GTGTGTCTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTCT  700

seq1  GTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTCTGTGTGT  750

seq1  CTGTGTCTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGT  800

seq1  CTGTGTCTGTGTCTGTGTGTCTGTCTGTGTCTGTGTCTGTCTGTGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGTCTGTGTGTCTGTCTGTGTCTGTGTCTGTCTGTGTCTGT  850

seq1  GTGTCTGTGTCTGTCTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTCTGTCTGTGTCTGTGTGTCTGTGTCTGTGTGTCTGTGTCT  900

seq1  GTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGTCTGTGTCTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGTCTGTGACTGTGA  950

seq1  CTGTGTCTGTGTCTGTGGCTGTGGCTGTGTGTGTGTCTGTGTCTGTGTGT  1000
      | | ||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  CAGAGTCTGTGTCTG-GGCTGTGGCTGTGTGTGTGTCTGTGTCAGTGTGT  999

seq1  C  1001
      |
seq2  C  1000

seq1: chr2_38651592_38652324
seq2: B6Ng01-088N04.g_68_805 (reverse)

seq1  GCATCG-CAGGGCCCCATCACTTTCACGC-AAATATACACGTACATGTAA  48
      |||||| |||||||||||||||||||||| ||||||||||||||||  ||
seq2  GCATCGTCAGGGCCCCATCACTTTCACGCAAAATATACACGTACAT-AAA  49

seq1  TTAAAAATAAATTTCTTGCTGGGCAGTGGTGGCGCACT-CCTTTAAT-CC  96
      |||||||||||||||| ||||||||||||||||||||| |||||||| ||
seq2  TTAAAAATAAATTTCTCGCTGGGCAGTGGTGGCGCACTCCCTTTAATCCC  99

seq1  CAGCACTCGGGAGGCAAAGGCAGGAGG-ATTTCTGAGTTC-AAGGCCAGC  144
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CAGCACTCGGGAGGCAAAGGCAGGAGGAATTTCTGAGTTCAAAGGCCAGC  149

seq1  CTGGTCTACAAAGTGAGTTCCAGAATAGCTAAATAAATAAATTTCTTTTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGTGAGTTCCAGAATAGCTAAATAAATAAATTTCTTTTT  199

seq1  AAAAAATTAGTGTGTATACAATGAAAAAATCACTTTCAGCTTTTACCAAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAGTGTGTATACAATGAAAAAATCACTTTCAGCTTTTACCAAC  249

seq1  TGTTTCTCTAGTTAGGAATGTAGCTGAGTGGTAGGGCACCTAGGTTTACC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTAGTTAGGAATGTAGCTGAGTGGTAGGGCACCTAGGTTTACC  299

seq1  TTACAGTAACCACACACACGCACACGCTCTCGCACACACAAACACACACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAACCACACACACGCACACGCTCTCGCACACACAAACACACACA  349

seq1  CACACACACACACACACACAGGGGTGGGGGGCGATAAGAGGGAACCATAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGGGGTGGGGGGCGATAAGAGGGAACCATAA  399

seq1  ACCACTCATTAGACTGGCAAATAGTGTGATTATTTTATTTTACTTTGGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCATTAGACTGGCAAATAGTGTGATTATTTTATTTTACTTTGGAG  449

seq1  AAAATGGATATGTTTTACAGTTCTGGCAGCTAAACTGTACGTATCCCATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATATGTTTTACAGTTCTGGCAGCTAAACTGTACGTATCCCATA  499

seq1  GCTCAAGAGTCCCATTACTTCTTACAGAAGTATTCGCTCTTTCTCTCAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAGTCCCATTACTTCTTACAGAAGTATTCGCTCTTTCTCTCAAA  549

seq1  GATGAATGCATAACAATGACACAACTTTAGAGGAATAGCCAAGATGAGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCATAACAATGACACAACTTTAGAGGAATAGCCAAGATGAGGA  599

seq1  AATGAGGTAAGAAACCAGACTACCACACATTGTCCAGTCTCCTTACACAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTAAGAAACCAGACTACCACACATTGTCCAGTCTCCTTACACAC  649

seq1  TCTCATTCTAGACTTTAGCTGGGCTGTCAGTCATTTGGGTAGTCCCTTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTAGACTTTAGCTGGGCTGTCAGTCATTTGGGTAGTCCCTTTC  699

seq1  CCCAACTCTTCACTAACAGTAATAATATCCAAGGAATTC  733
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCTTCACTAACAGTAATAATATCCAAGGAATTC  738