BAC Information

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BAC

Clone NameB6Ng01-089P01
Chromosome2 (Build37)3 (Build37)
Map Location 32,827,232 - 32,827,37251,089,836 - 51,090,368
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65
Downstream geneSlc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089P01.bB6Ng01-089P01.g
ACCDH902383DH902384
length171527
definitionDH902383|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P01, 5' end.DH902384|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,827,232 - 32,827,372)(51,089,836 - 51,090,368)
sequence
ttcacacagaaatattttgtgtggaaacaaggagagatggctcagcggtt
aagagcacggactggcaaaaaaaaaggtcctgagttcaaatcccagcaac
cacatggtggctctcaaccatctgtaatggaatctgatgccctctcctgg
tgtgtctgaagacagctacag
actgaaattttagatggacttcacctgccagtctttacttggaatataag
aagctatgatcatggaagagtgtcactaaatttttatgtttctttcgatt
acaccttgaatgttttattgcggggagagacaggcacatgccaccacaca
tgtgtggaggtcagagaacaactgaggggactcagccccctcctcgagtc
tgagggtttcagggaatgaacacaggatatcagacttgacagcatgtgct
tttacccactgacatctcacagccctgattacacttcccagcaggtattc
tcttatctgtcaatacttcatacatatatacactgcattctaattacacg
tccttcccactcctattaagccgcctcctccttagaaatgcctttcccac
attaatgatgttttattttgtgaaccactgaatttatccagggccatctg
tgtgatcctggggttggaactttccattggaagacggtgggctcatcgat
agggtcacaactaaaagcaaagattcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32827232_32827372
seq2: B6Ng01-089P01.b_80_220 (reverse)

seq1  CTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTTTGTTACG  50
      |||||||||||||||||||| |||| ||||||||||||| ||   |||| 
seq2  CTGTAGCTGTCTTCAGACACACCAGGAGAGGGCATCAGA-TTCCATTACA  49

seq1  GATGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGCCCTTT  100
      |||||||| |||| |||||||||||||||||||||||||||||| |||||
seq2  GATGGTTGAGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTT  99

seq1  GGAAGAG-CAGTTGGTGCTCTTAACCGCTGAGCTATCTCTCC  141
            | ||||  ||||||||||||||||||| ||||||||
seq2  TTTTTTGCCAGTCCGTGCTCTTAACCGCTGAGCCATCTCTCC  141

seq1: chr3_51089836_51090368
seq2: B6Ng01-089P01.g_69_601

seq1  GAATTCACTGTATTTTTAGATGGACTTCACCTGCCAGTCTTTACTTGGAA  50
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATTTTAGATGGACTTCACCTGCCAGTCTTTACTTGGAA  50

seq1  TAAATGAAGCTATGATCATGGAAGAGTGTCACTAAATTTTTATGTTTCTT  100
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAAGCTATGATCATGGAAGAGTGTCACTAAATTTTTATGTTTCTT  100

seq1  TCGATTACACCTTGAATGTTTTATTGCGGGGAGAGACAGGCACATGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTACACCTTGAATGTTTTATTGCGGGGAGAGACAGGCACATGCCAC  150

seq1  CACACATGTGTGGAGGTCAGAGAACAACTGAGGGGACTCAGCCCCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTGTGGAGGTCAGAGAACAACTGAGGGGACTCAGCCCCCTCCT  200

seq1  CGAGTCTGAGGGTTTCAGGGAATGAACACAGGATATCAGACTTGACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTGAGGGTTTCAGGGAATGAACACAGGATATCAGACTTGACAGCA  250

seq1  TGTGCTTTTACCCACTGACATCTCACAGCCCTGATTACACTTCCCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTACCCACTGACATCTCACAGCCCTGATTACACTTCCCAGCAG  300

seq1  GTATTCTCTTATCTGTCAATACTTCATACATATATACACTGCATTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTTATCTGTCAATACTTCATACATATATACACTGCATTCTAAT  350

seq1  TACACGTCCTTCCCACTCCTATTAAGCCGCCTCCTCCTTAGAAATGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTCCTTCCCACTCCTATTAAGCCGCCTCCTCCTTAGAAATGCCTT  400

seq1  TCCCACATTAATGATGTTTTATTTTGTGAACCACTGAATTTATCCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTAATGATGTTTTATTTTGTGAACCACTGAATTTATCCAGGGC  450

seq1  CATCTGTGTGATCCTGGGGTTGGAACTTTCCATTGGAAGACGGTGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGATCCTGGGGTTGGAACTTTCCATTGGAAGACGGTGGGCTC  500

seq1  ACCGATAGGGTCACAACTAAAAGCAAAGACTCG  533
      | ||||||||||||||||||||||||||| |||
seq2  ATCGATAGGGTCACAACTAAAAGCAAAGATTCG  533