BAC Information

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BAC

Clone NameB6Ng01-091G13
Chromosome2 (Build37)
Map Location 34,123,543 - 34,214,598
singlet/doubletdoublet
Overlap genePbx3
Upstream geneRalgps1, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091G13.bB6Ng01-091G13.g
ACCDH903442DH903443
length1,1401,064
definitionDH903442|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G13, 5' end.DH903443|Mus musculus domesticus DNA, BAC clone: B6Ng01-091G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,213,433 - 34,214,598)(34,123,543 - 34,124,616)
sequence
gaattcttctgtagtatggtttaagtaatttttaaatgacttaaaaaatt
tctatggacggtttcatagtctgaatggtataatttgctaagcataaaca
ttagtgaatagagcatgatgacacgtgtgtatctgcttgtgtcacgatga
accatgctctttgtatttaaattagctaattacatttttctgtgcatata
gtacacacaagtacaccacatatgaagtgaagcatgtatgaagtctgatg
tcatctttgaattcacatatattttcttgactaatccagattatgtttaa
tgttgaaatgttatattttcatttaaaaagtaaatgttctgcatgtgcag
ctgtgctaatattttacattttcttgtgacatgtgtatatggagaaagtg
ccatttatgatatgttgtcatcaataattttgtcattgagaataaaaggc
ttaaattcatccacccagtggaacattttgtcatatttattttaagagat
gaaattagtgaacagttgggctctttatatgtaggagatgtgaaaatagc
agaacatttaccatgaatggagtgcaacattagcatctcagtgccactaa
attatacagtagtagtggtagtgtattctatagacatctaataaatagtt
tcttgttttcccactttctttatatgtgttctttatatggcctagtttca
taataaaggtgatattaattattggttaacttttttagagtgatctatca
catttgaaactattgtatttcgaatgagaataaaacgttgttccaaatca
ttacatttactgattaaatgctcaccgatttttatccattggtgtatttg
gcaatttaagtaagagtttaccacagtaatgcttcagtggataatatttg
gaatagagtaacattttaatgagttcatcgagggagattcagcaggagca
tttcagtgtattacggcttttgtcttgtcaggatgcacatctccatacca
ttagagaaaaggcttcgagtcccactcatcttcgtataatgatactacaa
caacaacacgcacaacgcagcgcgcgcagcagcgcgcggagcagcagcgc
aagacaatatatcttagcttctcctttccattaagtctgg
gaattctttgacacttgtgattaaagtgctttccaaaggaacagatgctc
atttcttagatgcctgggggtactagtaacacaccccaggctaaattcaa
ggcctggctttttagggccacattgtggtatgaattccaatcatagacag
ttgaatacagacaggcatgggtcagatgtgtctagtactctcccacataa
ggccaaaggtaattcaccctacaaaagttcttccatttagagcttctagc
ttttcgtaaagatttctgtttttttttcttaagtccttaaaaactacaaa
ttcgaaatcattccaggtggggggatgggcagaccctctctcatcacccc
aagaaatgggtgtccatagaattattgtccttcctgtctcaaaagtctta
ctccgccactggctcagccatgccttagagaggaaactctccagccagca
ttttttaagtgtacaaacaggtgaggtttctcagactgacatctattttt
caaatgcacgtgtataacctgagctttgaaatttaataaaatcaatatag
tatctatagctttagtttactatatagaatgggtataattatggcatcta
ccttcgagggttcttataaaaattacatgaacaaattcatacaaagttct
tggcagagtgcctggaatacaggaaacatgtaagagcctcttgcccatat
cgttattattatggctgacttgggcccaacattataacctgttaaactgc
tttgtttttagagtcttggttttattattgaacagctatttcctccagca
acatacatcctaaaaatttattgcccatgccttctatttttctatctgag
taactgactttcttttttttaaatggggctgaggacatagctcagtggcc
agagagcttgcctagcatgaaggaggacctgagttcatgcctagcacacg
taaagtggacatggtgatacatgctctacctcagtactcaggaggtaaaa
tgagatcagaacttacagtcattcttgctatgtagggggggcagatggat
ccatggaaacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34213433_34214598
seq2: B6Ng01-091G13.b_46_1185 (reverse)

seq1  CCAGACTTTACTGGAAAGGAGAAGCTCTAGATTATTATTTTGTCTTTGCT  50
      |||||| ||| |||||||||||||||  |||    ||| ||||| |||| 
seq2  CCAGAC-TTAATGGAAAGGAGAAGCT-AAGA----TATATTGTC-TTGC-  42

seq1  GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGCTGT  100
      ||||||||| | || || |||||||| || || ||||| |||||   |||
seq2  GCTGCTGCT-CCGC-GC-GCTGCTGC-GC-GC-GCTGC-GTTGTGCGTGT  85

seq1  TGTTGTTGTTGTTAGTATCATTATTAACGGAGATGAGTGGGACTCTGAAG  150
      ||||||||    ||||||||||||  ||| ||||||||||||||| ||||
seq2  TGTTGTTG----TAGTATCATTAT--ACGAAGATGAGTGGGACTC-GAAG  128

seq1  CCTTTTCTCTAATGGTATGGAGATTGTGCATCCTGACAAGACAAAAGCCG  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTTTTCTCTAATGGTATGGAGA-TGTGCATCCTGACAAGACAAAAGCCG  177

seq1  TAATACACCTGAAATGCTCCCTGCTGAATCTCCCTCGATGAACTCATTAA  250
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TAATACA-CTGAAATGCT-CCTGCTGAATCTCCCTCGATGAACTCATTAA  225

seq1  AATGGTTACTCTATTCCAAATATTATCCACTGAAGCATTACTGTGGTAAA  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-GTTACTCTATTCCAAATATTATCCACTGAAGCATTACTGTGGTAAA  274

seq1  CTCTTACTTAAATTGCCAAATACACCAATGGATAAAAATCGGTGAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTAAATTGCCAAATACACCAATGGATAAAAATCGGTGAGCATT  324

seq1  TAATCAGTAAATGTAATGATTTGGAACAACGTTTTATTCTCATTCGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTAAATGTAATGATTTGGAACAACGTTTTATTCTCATTCGAAAT  374

seq1  ACAATAGTTTCAAATGTGATAGATCACTCTAAAAAAGTTAACCAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTTTCAAATGTGATAGATCACTCTAAAAAAGTTAACCAATAATT  424

seq1  AATATCACCTTTATTATGAAACTAGGCCATATAAAGAACACATATAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACCTTTATTATGAAACTAGGCCATATAAAGAACACATATAAAGA  474

seq1  AAGTGGGAAAACAAGAAACTATTTATTAGATGTCTATAGAATACACTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAAAACAAGAAACTATTTATTAGATGTCTATAGAATACACTACC  524

seq1  ACTACTACTGTATAATTTAGTGGCACTGAGATGCTAATGTTGCACTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACTGTATAATTTAGTGGCACTGAGATGCTAATGTTGCACTCCAT  574

seq1  TCATGGTAAATGTTCTGCTATTTTCACATCTCCTACATATAAAGAGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAAATGTTCTGCTATTTTCACATCTCCTACATATAAAGAGCCCA  624

seq1  ACTGTTCACTAATTTCATCTCTTAAAATAAATATGACAAAATGTTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCACTAATTTCATCTCTTAAAATAAATATGACAAAATGTTCCACT  674

seq1  GGGTGGATGAATTTAAGCCTTTTATTCTCAATGACAAAATTATTGATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGATGAATTTAAGCCTTTTATTCTCAATGACAAAATTATTGATGAC  724

seq1  AACATATCATAAATGGCACTTTCTCCATATACACATGTCACAAGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCATAAATGGCACTTTCTCCATATACACATGTCACAAGAAAATG  774

seq1  TAAAATATTAGCACAGCTGCACATGCAGAACATTTACTTTTTAAATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTAGCACAGCTGCACATGCAGAACATTTACTTTTTAAATGAAA  824

seq1  ATATAACATTTCAACATTAAACATAATCTGGATTAGTCAAGAAAATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATTTCAACATTAAACATAATCTGGATTAGTCAAGAAAATATAT  874

seq1  GTGAATTCAAAGATGACATCAGACTTCATACATGCTTCACTTCATATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCAAAGATGACATCAGACTTCATACATGCTTCACTTCATATGTG  924

seq1  GTGTACTTGTGTGTACTATATGCACAGAAAAATGTAATTAGCTAATTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTGTGTGTACTATATGCACAGAAAAATGTAATTAGCTAATTTAA  974

seq1  ATACAAAGAGCATGGTTCATCGTGACACAAGCAGATACACACGTGTCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGAGCATGGTTCATCGTGACACAAGCAGATACACACGTGTCATC  1024

seq1  ATGCTCTATTCACTAATGTTTATGCTTAGCAAATTATACCATTCAGACTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTATTCACTAATGTTTATGCTTAGCAAATTATACCATTCAGACTA  1074

seq1  TGAAACCGTCCATAGAAATTTTTTAAGTCATTTAAAAATTACTTAAACCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGTCCATAGAAATTTTTTAAGTCATTTAAAAATTACTTAAACCA  1124

seq1  TACTACAGAAGAATTC  1166
      ||||||||||||||||
seq2  TACTACAGAAGAATTC  1140

seq1: chr2_34123543_34124616
seq2: B6Ng01-091G13.g_66_1129

seq1  GAATTCTTTGACACTTGTGATTAAAGTGCTTTCCAAAGGAACAGATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACACTTGTGATTAAAGTGCTTTCCAAAGGAACAGATGCTC  50

seq1  ATTTCTTAGATGCCTGGGGGTACTAGTAACACACCCCAGGCTAAATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGATGCCTGGGGGTACTAGTAACACACCCCAGGCTAAATTCAA  100

seq1  GGCCTGGCTTTTTAGGGCCACATTGTGGTATGAATTCCAATCATAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTTTTTAGGGCCACATTGTGGTATGAATTCCAATCATAGACAG  150

seq1  TTGAATACAGACAGGCATGGGTCAGATGTGTCTAGTACTCTCCCACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACAGACAGGCATGGGTCAGATGTGTCTAGTACTCTCCCACATAA  200

seq1  GGCCAAAGGTAATTCACCCTACAAAAGTTCTTCCATTTAGAGCTTCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGGTAATTCACCCTACAAAAGTTCTTCCATTTAGAGCTTCTAGC  250

seq1  TTTTCGTAAAGATTTCTGTTTTTTTTTCTTAAGTCCTTAAAAACTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTAAAGATTTCTGTTTTTTTTTCTTAAGTCCTTAAAAACTACAAA  300

seq1  TTCGAAATCATTCCAGGTGGGGGGATGGGCAGACCCTCTCTCATCACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAATCATTCCAGGTGGGGGGATGGGCAGACCCTCTCTCATCACCCC  350

seq1  AAGAAATGGGTGTCCATAGAATTATTGTCCTTCCTGTCTCAAAAGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGGTGTCCATAGAATTATTGTCCTTCCTGTCTCAAAAGTCTTA  400

seq1  CTCCGCCACTGGCTCAGCCATGCCTTAGAGAGGAAACTCTCCAGCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCACTGGCTCAGCCATGCCTTAGAGAGGAAACTCTCCAGCCAGCA  450

seq1  TTTTTTAAGTGTACAAACAGGTGAGGTTTCTCAGACTGACATCTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTGTACAAACAGGTGAGGTTTCTCAGACTGACATCTATTTTT  500

seq1  CAAATGCACGTGTATAACCTGAGCTTTGAAATTTAATAAAATCAATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCACGTGTATAACCTGAGCTTTGAAATTTAATAAAATCAATATAG  550

seq1  TATCTATAGCTTTAGTTTACTATATAGAATGGGTATAATTATGGCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAGCTTTAGTTTACTATATAGAATGGGTATAATTATGGCATCTA  600

seq1  CCTTCGAGGGTTCTTATAAAAATTACATGAACAAATTCATACAAAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAGGGTTCTTATAAAAATTACATGAACAAATTCATACAAAGTTCT  650

seq1  TGGCAGAGTGCCTGGAATACAGGAAACATGTAAGAGCCTCTTGCCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGTGCCTGGAATACAGGAAACATGTAAGAGCCTCTTGCCCATAT  700

seq1  CGTTATTATTATGGCTGACTTGGGCCCAACATTATAACCTGTTAAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTATTATGGCTGACTTGGGCCCAACATTATAACCTGTTAAACTGC  750

seq1  TTTGTTTTTAGAGTCTTGGTTTTATTATTGAACAGCTATTTCCTCCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAGAGTCTTGGTTTTATTATTGAACAGCTATTTCCTCCAGCA  800

seq1  ACATACATCCTAAAAATTTATTGCCCATGCCTTCTATTTTTCTATCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCCTAAAAATTTATTGCCCATGCCTTCTATTTTTCTATCTGAG  850

seq1  TAACTGACTTTCTTTTTTTTAAATGGGGCTGAGGACATAGCTCAGTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACTTTCTTTTTTTTAAATGGGGCTGAGGACATAGCTCAGTGGCC  900

seq1  AGAGAGCTTGCCTAGCATGAAGGAGGACCTGAGTTCAATGCCTAGCACCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AGAGAGCTTGCCTAGCATGAAGGAGGACCTGAGTTC-ATGCCTAGCA-CA  948

seq1  CGTAAAAGTGGACATGGTGATACATGCTCTAACCTCAGTACTCAGGAGGT  1000
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGT-AAAGTGGACATGGTGATACATGCTCT-ACCTCAGTACTCAGGAGGT  996

seq1  AAAAATGAAGATCAGAAACTTACAGTCATTCTTGGCTATGTAGGGGGGGG  1050
       |||||| ||||||| ||||||||||||||||| ||||||||  ||||||
seq2  -AAAATG-AGATCAG-AACTTACAGTCATTCTT-GCTATGTA--GGGGGG  1040

seq1  GCAGATGGGATCCAT-GAAACATTG  1074
      |||||| |||||||| |||||||||
seq2  GCAGAT-GGATCCATGGAAACATTG  1064