BAC Information

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BAC

Clone NameB6Ng01-091H04
Chromosome2 (Build37)
Map Location 45,547,995 - 45,695,344
singlet/doubletdoublet
Overlap geneLOC100041337, LOC666604
Upstream geneGtdc1, Zeb2, LOC100042661
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091H04.bB6Ng01-091H04.g
ACCDH903469DH903470
length1,1961,141
definitionDH903469|Mus musculus domesticus DNA, BAC clone: B6Ng01-091H04, 5' end.DH903470|Mus musculus domesticus DNA, BAC clone: B6Ng01-091H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,547,995 - 45,549,205)(45,694,198 - 45,695,344)
sequence
gaattctccagagccgttatgattgtcagaaagctgaggcaacgtatgat
ccaacaggcttcccagaggacaaaaggaatctagactataagtacaaact
tttaccaatgcctcagactttggaaaacaaaacaaaatcttcacctaacc
ctagtgcagatcctattgctgggtggcaatagagacaggaaggagtgtgt
tcacagactgttttcctttccttagtctacaatgcagcagagtattattt
ttatctgtctgaaaattgtgacctttataaggtcttaagtactgaatttg
cattcatttgaggaataaaaagtgagcccaatctacagataaaataatgt
cttctgcataatactgtactgagaatcaattttattatagccaccagagc
aaggataaaaataggttcttccccaaagtcatatcaaggcactatttata
gagacatctagatcagtaagttttgacattcttggtctagattgtgaaaa
cacacttcatcttgcttttcagttctgccttgttggtagtgatttcctgt
agctcatatcagagagttcagttatgtattgtacagcttctgcgattaat
tttcattttctgccattgctgtagaaaaaggaagtggcaatgtatgttga
tgtatctgtgagtcaagaataatagaactgaaagtcaagaatcataagga
aggacagatatctgtgcactcagaatgtaggacaaggcagggaagaagtg
ggaaaaaaaatgaaggattcccaagaagaaatcaaggcatatactcctgt
ataaaaaaaaatataacaagaaagacagggatattgtagcagaataattt
tagtattttggcataaaaagggccctaacctgtacacacagagtcagtga
atgtgcgctccagtgacagcaagcctgtggttctttgatgcagtacaaaa
tcaggaaagagtcctggaagcttcaagtgaattttcccagaggattgtga
aagctttagcgctggccagctagcatgccttctcacgggtccctttacct
ttcccccgcttcctttctcatgcctcttgtttatgctgaacattaaggct
tcttcgtttaacaaatcttcagctttgactgctgtcaccaagagttcatg
cttttgttacagcagtgagcctgctcacgccagtcaatcgagcaaa
gaattcttaaatactcgtttttcagatgtttttcctatatatttctctac
tttagcttcaataaatgttacccaactttatctgaaaatgatctgagtag
ttgagatcttgtgagaatctgattaggaaatacagaaaataaaatccttt
taagtagttaaagatttgtgtctttagaatatattggtaacttagcatac
acatgacctgttaagtttaaagagaaattagtactcaataaattatagct
tattctgggaaataatattttaagtgacacttggttaagacaaacaaagt
tccaatttagcattcaatatcctcctatgagtttctttctttgacttcta
aggtagataaataagagttaacatgaggaaagaattttagtatgtaataa
tgcaatgtgattgaaactttgtcttcctgagacataaacagtatatatct
ccattatgtatcctatgttcttggtactattatttagaattatgaattct
ttatacatttgggctaaataatatctgataatgctcaaagccgacaagtt
agacttgctaaggaaatttctgaactacaaactttctggtctgctattcc
ttctgcctatccaccatgctcatggttttaacatttcactttattcgtat
ccaaatctattgattcacaagataaatattgacctgaccttgccttcacc
tcagtttatatctacttcttaagtcaataaatccagaaactgatctgaca
gcagtcaatattagttgaattttttaaatagcagctttcctgtaaagtaa
taattcagtattttatagtttctgcctcaaagaaataaaaatgcagtgta
actcaccaatttgttgggcaaaactattcctatgtcatttgatggtgaat
acaagctgcccctggtgccaaagagcatctctgatgtccataaatcttct
aatctcagatcggagagcttgaaatattttactacgcttgctggtggcac
agcacatcagtgtcctgcttaggttctaattatattatccagatattatt
cttcaggggactggatggtgatttgttggtctcgtttcctttgacctctt
ttttacctgagggggtataaataggttcaatagttcatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45547995_45549205
seq2: B6Ng01-091H04.b_44_1239

seq1  GAATTCTCCAGAGCCGTTATGATTGTCAGAAAGCTGAGGCAACGTATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAGCCGTTATGATTGTCAGAAAGCTGAGGCAACGTATGAT  50

seq1  CCAACAGGCTTCCCAGAGGACAAAAGGAATCTAGACTATAAGTACAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGCTTCCCAGAGGACAAAAGGAATCTAGACTATAAGTACAAACT  100

seq1  TTTACCAATGCCTCAGACTTTGGAAAACAAAACAAAATCTTCACCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAATGCCTCAGACTTTGGAAAACAAAACAAAATCTTCACCTAACC  150

seq1  CTAGTGCAGATCCTATTGCTGGGTGGCAATAGAGACAGGAAGGAGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCAGATCCTATTGCTGGGTGGCAATAGAGACAGGAAGGAGTGTGT  200

seq1  TCACAGACTGTTTTCCTTTCCTTAGTCTACAATGCAGCAGAGTATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTGTTTTCCTTTCCTTAGTCTACAATGCAGCAGAGTATTATTT  250

seq1  TTATCTGTCTGAAAATTGTGACCTTTATAAGGTCTTAAGTACTGAATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTCTGAAAATTGTGACCTTTATAAGGTCTTAAGTACTGAATTTG  300

seq1  CATTCATTTGAGGAATAAAAAGTGAGCCCAATCTACAGATAAAATAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTGAGGAATAAAAAGTGAGCCCAATCTACAGATAAAATAATGT  350

seq1  CTTCTGCATAATACTGTACTGAGAATCAATTTTATTATAGCCACCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATAATACTGTACTGAGAATCAATTTTATTATAGCCACCAGAGC  400

seq1  AAGGATAAAAATAGGTTCTTCCCCAAAGTCATATCAAGGCACTATTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAATAGGTTCTTCCCCAAAGTCATATCAAGGCACTATTTATA  450

seq1  GAGACATCTAGATCAGTAAGTTTTGACATTCTTGGTCTAGATTGTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTAGATCAGTAAGTTTTGACATTCTTGGTCTAGATTGTGAAAA  500

seq1  CACACTTCATCTTGCTTTTCAGTTCTGCCTTGTTGGTAGTGATTTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCATCTTGCTTTTCAGTTCTGCCTTGTTGGTAGTGATTTCCTGT  550

seq1  AGCTCATATCAGAGAGTTCAGTTATGTATTGTACAGCTTCTGCGATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATATCAGAGAGTTCAGTTATGTATTGTACAGCTTCTGCGATTAAT  600

seq1  TTTCATTTTCTGCCATTGCTGTAGAAAAAGGAAGTGGCAATGTATGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTCTGCCATTGCTGTAGAAAAAGGAAGTGGCAATGTATGTTGA  650

seq1  TGTATCTGTGAGTCAAGAATAATAGAACTGAAAGTCAAGAATCATAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTGAGTCAAGAATAATAGAACTGAAAGTCAAGAATCATAAGGA  700

seq1  AGGACAGATATCTGTGCACTCAGAATGTAGGACAAGGCAGGGAAGAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGATATCTGTGCACTCAGAATGTAGGACAAGGCAGGGAAGAAGTG  750

seq1  GGAAAAAAAATGAAGGATTCCCAAGAAGAAATCAAGGCATATACTCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAATGAAGGATTCCCAAGAAGAAATCAAGGCATATACTCCTGT  800

seq1  ATAAAAAAAAATATAACAAGAAAGACAGGGATATTGTAGCAGAATAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAATATAACAAGAAAGACAGGGATATTGTAGCAGAATAATTT  850

seq1  TAGTATTTTGGCATAAAAAGGGCCCTAACCTGTACACACAGAGTCAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTGGCATAAAAAGGGCCCTAACCTGTACACACAGAGTCAGTGA  900

seq1  ATGTGCGCTCCAGTGACAGCAAGCCTGTGGTTCTTTGATGCAGTACAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGCTCCAGTGACAGCAAGCCTGTGGTTCTTTGATGCAGTACAAAA  950

seq1  TCAGGAAAGAGTCCTGGAAGCTTCAAGTGAATTTTCCCAGAGGATTGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAGAGTCCTGGAAGCTTCAAGTGAATTTTCCCAGAGGATTGTGA  1000

seq1  AAGGCTTTAGCGCTGGCCAGCTAGCATGCCTTCTCACGGTCCCCTTTACC  1050
      || ||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AA-GCTTTAGCGCTGGCCAGCTAGCATGCCTTCTCACGGGTCCCTTTACC  1049

seq1  TTTCCCCCGCTTCCTTTCTCATGCCTCTTGTTTATGCTGAACATTTAGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TTTCCCCCGCTTCCTTTCTCATGCCTCTTGTTTATGCTGAACA-TTAAGG  1098

seq1  CTTCTTCCTTTTAACAAATTCTTCAGCCTTTGACTTGCTTGTCACCACAG  1150
      |||||| | ||||||||| ||||||| ||||||| ||| |||||||| ||
seq2  CTTCTT-CGTTTAACAAA-TCTTCAG-CTTTGAC-TGC-TGTCACCA-AG  1142

seq1  AGTTTCATGCTTTTGTTACAAGGCAGTGAGCTTGCTCCACGCACAGTTCA  1200
      || |||||||||||||||||  ||||||||| |||| ||||| ||||   
seq2  AG-TTCATGCTTTTGTTACA--GCAGTGAGCCTGCT-CACGC-CAGT--C  1185

seq1  AATCGAGCAAA  1211
      |||||||||||
seq2  AATCGAGCAAA  1196

seq1: chr2_45694198_45695344
seq2: B6Ng01-091H04.g_69_1209 (reverse)

seq1  AGTATG-ACTATTGACTCTATTTATTACACCCTCAGGTAAAAATGAGTCC  49
      |||||| ||||||||  ||||||| ||| |||||||||||||| |||  |
seq2  AGTATGAACTATTGAACCTATTTA-TACCCCCTCAGGTAAAAAAGAGGTC  49

seq1  AGAGGGAAACGAGACCAACAAAATCA-CAT-CAGTCCCCTGAAGAATAAT  97
      | | ||||||||||||||| |||||| ||| |||||||||||||||||| 
seq2  A-AAGGAAACGAGACCAAC-AAATCACCATCCAGTCCCCTGAAGAATAA-  96

seq1  TATCTGGATTAATTATAATTAGAACCTAAGCAGGACACTGATGTGCTGTT  147
      |||||||||  | ||||||||||||||||||||||||||||||||||| |
seq2  TATCTGGAT--AATATAATTAGAACCTAAGCAGGACACTGATGTGCTG-T  143

seq1  GCCACCAGCAAGCGTAGTAAAATATTTCAAGCTCTTCCGATCTGAGATTA  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCACCAGCAAGCGTAGTAAAATATTTCAAGCTC-TCCGATCTGAGATTA  192

seq1  GAAGATTTATGGACATCAGAGATGCTCTTTGGCACCAGGGGCAGCTTTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGATTTATGGACATCAGAGATGCTCTTTGGCACCAGGGGCAGC-TTGT  241

seq1  ATTCACCATCAAATGACATAGGAATAGTTTTGCCCAACAAATTGGTGAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCATCAAATGACATAGGAATAGTTTTGCCCAACAAATTGGTGAGT  291

seq1  TACACTGCATTTTTATTTCTTTGAGGCAGAAACTATAAAATACTGAATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCATTTTTATTTCTTTGAGGCAGAAACTATAAAATACTGAATTA  341

seq1  TTACTTTACAGGAAAGCTGCTATTTAAAAAATTCAACTAATATTGACTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTACAGGAAAGCTGCTATTTAAAAAATTCAACTAATATTGACTGC  391

seq1  TGTCAGATCAGTTTCTGGATTTATTGACTTAAGAAGTAGATATAAACTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATCAGTTTCTGGATTTATTGACTTAAGAAGTAGATATAAACTGA  441

seq1  GGTGAAGGCAAGGTCAGGTCAATATTTATCTTGTGAATCAATAGATTTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGCAAGGTCAGGTCAATATTTATCTTGTGAATCAATAGATTTGG  491

seq1  ATACGAATAAAGTGAAATGTTAAAACCATGAGCATGGTGGATAGGCAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAATAAAGTGAAATGTTAAAACCATGAGCATGGTGGATAGGCAGAA  541

seq1  GGAATAGCAGACCAGAAAGTTTGTAGTTCAGAAATTTCCTTAGCAAGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCAGACCAGAAAGTTTGTAGTTCAGAAATTTCCTTAGCAAGTCT  591

seq1  AACTTGTCGGCTTTGAGCATTATCAGATATTATTTAGCCCAAATGTATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCGGCTTTGAGCATTATCAGATATTATTTAGCCCAAATGTATAA  641

seq1  AGAATTCATAATTCTAAATAATAGTACCAAGAACATAGGATACATAATGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATAATTCTAAATAATAGTACCAAGAACATAGGATACATAATGG  691

seq1  AGATATATACTGTTTATGTCTCAGGAAGACAAAGTTTCAATCACATTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATACTGTTTATGTCTCAGGAAGACAAAGTTTCAATCACATTGCA  741

seq1  TTATTACATACTAAAATTCTTTCCTCATGTTAACTCTTATTTATCTACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATACTAAAATTCTTTCCTCATGTTAACTCTTATTTATCTACCT  791

seq1  TAGAAGTCAAAGAAAGAAACTCATAGGAGGATATTGAATGCTAAATTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCAAAGAAAGAAACTCATAGGAGGATATTGAATGCTAAATTGGA  841

seq1  ACTTTGTTTGTCTTAACCAAGTGTCACTTAAAATATTATTTCCCAGAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTGTCTTAACCAAGTGTCACTTAAAATATTATTTCCCAGAATA  891

seq1  AGCTATAATTTATTGAGTACTAATTTCTCTTTAAACTTAACAGGTCATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAATTTATTGAGTACTAATTTCTCTTTAAACTTAACAGGTCATGT  941

seq1  GTATGCTAAGTTACCAATATATTCTAAAGACACAAATCTTTAACTACTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTAAGTTACCAATATATTCTAAAGACACAAATCTTTAACTACTTA  991

seq1  AAAGGATTTTATTTTCTGTATTTCCTAATCAGATTCTCACAAGATCTCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTTTATTTTCTGTATTTCCTAATCAGATTCTCACAAGATCTCAA  1041

seq1  CTACTCAGATCATTTTCAGATAAAGTTGGGTAACATTTATTGAAGCTAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGATCATTTTCAGATAAAGTTGGGTAACATTTATTGAAGCTAAA  1091

seq1  GTAGAGAAATATATAGGAAAAACATCTGAAAAACGAGTATTTAAGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAATATATAGGAAAAACATCTGAAAAACGAGTATTTAAGAATTC  1141