BAC Information

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BAC

Clone NameB6Ng01-092K04
Chromosome2 (Build37)
Map Location 89,780,196 - 89,864,408
singlet/doubletdoublet
Overlap geneOlfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264
Upstream geneOlfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258
Downstream geneOlfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092K04.bB6Ng01-092K04.g
ACCDH904342DH904343
length1,1511,091
definitionDH904342|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K04, 5' end.DH904343|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,863,238 - 89,864,408)(89,780,196 - 89,780,899)
sequence
gaattctcatgttacatagaatacttgtatagataatccaaacaggagag
tttttaaaaatagtttttaatcaatattttttctatagtcacaagtatga
atcagagagacaagtcatcatatcatttttattttgggaatattaattta
ccatttatattttataatattcagtgtgattttattttcagtattagaat
aaagattaggacatttttcacatttcatgtttatatatttaaaatgccag
tctgcagtctgtcttagttccttaaaccacacaaagaattgtccatgatc
tagctgctagtgataatcacatatattaattattagatatttatcagttc
caggtccttatatacacataacttaccctgttttcacgtccttgctgcta
cattaggttgctccagaactcttttacttaaaatcttagcccagttttga
acatggacataataattgcaggcatgtttgctcttattttatagacaaaa
ccactaaggctttgagaagttgtacattatccattgttaggttgagaatg
attgccaatggcaggaatcacatagagaagtattaactgacaatatcata
tagcccagcccacagacactgtggcaggattgcctgggggcaagacttag
atctgccactaatttgctatttgtatttctcaaaagaaaaccaaaacaga
aacacaaaatgcactaaaactgctcaggactagcccaaagttgttgaatg
cagtgtctcattttctgtgtgtacaaggtgagaatttactccgtggggat
gacgtgagagtgaaattagctgatatattttgcaaagtgctcggggaggg
tcatgctggtttgatctgcagtgtcgctgtctgaacttttggctagaaag
gtttgccccatcagtcctgtcacttatagaaacttatatttacctccttg
cagtacagcataaacagcaagagacatgattcctgatagcacattttttt
tccttgcaggatgatctttctgaccctctatggtttccctagttcttgta
ctaaatattcttatctttagcaagtggggagtttactatttcaaagcttg
tacttctaggtagagagttgtggaggctactgcgttctcgaacaaagctg
c
gaattcaattgaactggttgactaaattgaactcaacaagcaaacttgct
aataaactcaactccattgcactgcacttacttcactgactcccatcttg
aatgatcaaactgaatgattcctgagagttaggtatatccaatctctgac
tcattctgtcaaatctttctcagattcatcactttgtctcaattagacgt
cactgtttgttattaaaggtgtgtactaaaggattccagtcagagggact
aaaggtatatactaagggcgtgtctgcattctagccagatcacagaccta
gaatgcctttgggtatgatcagaccatccatgtctttgtattaaaattcc
tctacactttctgctttgtggactaacttgaggaatattggtgttaactc
ttctttgaaaatctggtagaattatgcactgaaatcatttgacttaattt
ttgtttgaactctattttagatattaaaatggatgcaccagcttgctttt
tatatccatctgcttggaatatctttttctaacccattaccctgagataa
tgtttatctttagtattgagttgcgtttcttttatgcgacaaaatcatga
ttccagttttttaatccattgtgtacatctgcatctttttattgtggaat
tgaggccattggtattgagagatatcaatgatcagtgattttctttactt
ttgttgttgtggtggtggtgtgtgcacgtgcatatgtgatttttcttttg
gttttgatgatgtgagattgttaatttcttgtgtttgagtgagtgtagtt
gacctttgacctgtattttgccttttatcacattctaatactagtttggc
tagatttatacatatttaaatttgactttatcatgtaatattttattttc
tctagttatgatgattgaaagatttatttgtcaaaatatctcaataaaat
taaattaaaaataattcccacagcatttcttggacaaaacatacataagt
ttttatttttaaaaaagcaataaatgtgatatttccctcaaaaatcaaaa
gtctattaaacccaaatttagcgtagttggttatctcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_89863238_89864408
seq2: B6Ng01-092K04.b_49_1199 (reverse)

seq1  GCAGCTTTTGTTTCGAGAAACCTGTCAGTAGGCCTTCACAACTCTCTTAC  50
      ||||||||   ||||||||      ||||| |||| |||||||||| |||
seq2  GCAGCTTT--GTTCGAGAA----CGCAGTA-GCCTCCACAACTCTC-TAC  42

seq1  CTAGAAGTACAAGCCTTTTTGAATAGTTAAAACTTCCCACTTGCTAAAGA  100
      ||||||||||||||  |||  ||||||  ||||| |||||||||||||||
seq2  CTAGAAGTACAAGC--TTTGAAATAGT--AAACTCCCCACTTGCTAAAGA  88

seq1  TATAGAATATTTAGTACAAGAACTAAGGGAAAAACCATAGAGTGTCAGAA  150
      || |||||||||||||||||||||| ||   ||||||||||| |||||||
seq2  TA-AGAATATTTAGTACAAGAACTAGGG---AAACCATAGAGGGTCAGAA  134

seq1  AGATCAATCCTGCAAGGAAAAAAAAATGTGCTAATCAGGAATCATGTCTC  200
      ||||| ||||||||||| |||||||||||||| |||||||||||||||||
seq2  AGATC-ATCCTGCAAGG-AAAAAAAATGTGCT-ATCAGGAATCATGTCTC  181

seq1  TTTGCTGTTTATGCTGTACTGCAAGGAGGTAAATATAAGTTTCTATAAGT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGCTGTTTATGCTGTACTGCAAGGAGGTAAATATAAGTTTCTATAAGT  230

seq1  GACAGGACTGATGGGGCAAACCTTTCTAGCCAAAAGTTCAGACAGCGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACTGATGGGGCAAACCTTTCTAGCCAAAAGTTCAGACAGCGACA  280

seq1  CTGCAGATCAAACCAGCATGACCCTCCCCGAGCACTTTGCAAAATATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATCAAACCAGCATGACCCTCCCCGAGCACTTTGCAAAATATATC  330

seq1  AGCTAATTTCACTCTCACGTCATCCCCACGGAGTAAATTCTCACCTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTTCACTCTCACGTCATCCCCACGGAGTAAATTCTCACCTTGTA  380

seq1  CACACAGAAAATGAGACACTGCATTCAACAACTTTGGGCTAGTCCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAAAATGAGACACTGCATTCAACAACTTTGGGCTAGTCCTGAGC  430

seq1  AGTTTTAGTGCATTTTGTGTTTCTGTTTTGGTTTTCTTTTGAGAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTGCATTTTGTGTTTCTGTTTTGGTTTTCTTTTGAGAAATACA  480

seq1  AATAGCAAATTAGTGGCAGATCTAAGTCTTGCCCCCAGGCAATCCTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAATTAGTGGCAGATCTAAGTCTTGCCCCCAGGCAATCCTGCCA  530

seq1  CAGTGTCTGTGGGCTGGGCTATATGATATTGTCAGTTAATACTTCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTGTGGGCTGGGCTATATGATATTGTCAGTTAATACTTCTCTAT  580

seq1  GTGATTCCTGCCATTGGCAATCATTCTCAACCTAACAATGGATAATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCTGCCATTGGCAATCATTCTCAACCTAACAATGGATAATGTAC  630

seq1  AACTTCTCAAAGCCTTAGTGGTTTTGTCTATAAAATAAGAGCAAACATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCAAAGCCTTAGTGGTTTTGTCTATAAAATAAGAGCAAACATGC  680

seq1  CTGCAATTATTATGTCCATGTTCAAAACTGGGCTAAGATTTTAAGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTATTATGTCCATGTTCAAAACTGGGCTAAGATTTTAAGTAAAA  730

seq1  GAGTTCTGGAGCAACCTAATGTAGCAGCAAGGACGTGAAAACAGGGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGGAGCAACCTAATGTAGCAGCAAGGACGTGAAAACAGGGTAAG  780

seq1  TTATGTGTATATAAGGACCTGGAACTGATAAATATCTAATAATTAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATATAAGGACCTGGAACTGATAAATATCTAATAATTAATATA  830

seq1  TGTGATTATCACTAGCAGCTAGATCATGGACAATTCTTTGTGTGGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTATCACTAGCAGCTAGATCATGGACAATTCTTTGTGTGGTTTAA  880

seq1  GGAACTAAGACAGACTGCAGACTGGCATTTTAAATATATAAACATGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAGACAGACTGCAGACTGGCATTTTAAATATATAAACATGAAAT  930

seq1  GTGAAAAATGTCCTAATCTTTATTCTAATACTGAAAATAAAATCACACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATGTCCTAATCTTTATTCTAATACTGAAAATAAAATCACACTG  980

seq1  AATATTATAAAATATAAATGGTAAATTAATATTCCCAAAATAAAAATGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAAAATATAAATGGTAAATTAATATTCCCAAAATAAAAATGAT  1030

seq1  ATGATGACTTGTCTCTCTGATTCATACTTGTGACTATAGAAAAAATATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACTTGTCTCTCTGATTCATACTTGTGACTATAGAAAAAATATTG  1080

seq1  ATTAAAAACTATTTTTAAAAACTCTCCTGTTTGGATTATCTATACAAGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTATTTTTAAAAACTCTCCTGTTTGGATTATCTATACAAGTA  1130

seq1  TTCTATGTAACATGAGAATTC  1171
      |||||||||||||||||||||
seq2  TTCTATGTAACATGAGAATTC  1151

seq1: chr2_89780196_89780899
seq2: B6Ng01-092K04.g_554_1160

seq1  GCACCAGCTTGCTTTTTATATCCATCTGCTTGGAATATCTTTTTCTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCTTGCTTTTTATATCCATCTGCTTGGAATATCTTTTTCTAACC  50

seq1  CATTACCCTGAGATAATGTTTATCTTTAGTATTGAGTTGCGTTTCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCTGAGATAATGTTTATCTTTAGTATTGAGTTGCGTTTCTTTTA  100

seq1  TGCGACAAAATCATGATTCCAGTTTTTTAATCCATTGTGTACATCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACAAAATCATGATTCCAGTTTTTTAATCCATTGTGTACATCTGCAT  150

seq1  CTTTTTATTGTGGAATTGAGGCCATTGGTATTGAGAGATATCAATGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTGTGGAATTGAGGCCATTGGTATTGAGAGATATCAATGATCA  200

seq1  GTGATTTTCTTTACTTTTGTTGTTGTGGTGGTGGTGTGTGCACGTGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTCTTTACTTTTGTTGTTGTGGTGGTGGTGTGTGCACGTGCATA  250

seq1  TGTGATTTTTCTTTTGGTTTTGATGATGTGAGATTGTTAATTTCTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTCTTTTGGTTTTGATGATGTGAGATTGTTAATTTCTTGTGT  300

seq1  TTGAGTGAGTGTAGTTGACC-TTGACCTGTATTTTGCCTTTTATCACATT  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAGTGAGTGTAGTTGACCTTTGACCTGTATTTTGCCTTTTATCACATT  350

seq1  CTAATACTAGTTTGGCTAGATTTATACATATTTAAATTTGACTTTATCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTAGTTTGGCTAGATTTATACATATTTAAATTTGACTTTATCAT  400

seq1  GTAATATTTTATTTTCTCTAGTTATGATGATTGAAAGATTTACTTGTCAA  449
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAATATTTTATTTTCTCTAGTTATGATGATTGAAAGATTTATTTGTCAA  450

seq1  TAATATCCCAATAAAACTAAAATTAAAAATAATTCACACAGCATTACTT-  498
       |||||| |||||||| | |||||||||||||||| ||||||||| ||| 
seq2  -AATATCTCAATAAAA-TTAAATTAAAAATAATTCCCACAGCATTTCTTG  498

seq1  GACAAAACATACATAAGTTTTTATTTTTAAGATAGCAATAAATGTGATTA  548
      |||||||||||||||||||||||||||||| | |||||||||||||| ||
seq2  GACAAAACATACATAAGTTTTTATTTTTAAAAAAGCAATAAATGTGA-TA  547

seq1  TTATCCTCAGAAATCCAAAATGTTCATTAAAACACAAATTTAGCATAAGT  598
      ||  ||||| |||||  ||| ||  ||| |||| |||||||||| | |||
seq2  TTTCCCTCAAAAATC--AAAAGTCTATT-AAACCCAAATTTAGCGT-AGT  593

seq1  TGGTTTATCTC-TGACTACTCATGGTAGTGATTAGCATGAAATCAAAGTA  647
      ||| |||||||   |                                   
seq2  TGG-TTATCTCAACA-----------------------------------  607

seq1  CAAAAACGTGCTAGATGATCAGGAGATGGAAGTACAGAGGGTTACAGAAT  697
                                                        
seq2  --------------------------------------------------  607

seq1  CTCAACA  704
             
seq2  -------  607