BAC Information

Click to search

BAC

Clone NameB6Ng01-092L09
Chromosome2 (Build37)
Map Location 33,993,184 - 34,130,987
singlet/doubletdoublet
Overlap genePbx3
Upstream geneRalgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream geneLOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L09.bB6Ng01-092L09.g
ACCDH904395DH904396
length1,0921,164
definitionDH904395|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L09, 5' end.DH904396|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,993,184 - 33,994,281)(34,129,805 - 34,130,987)
sequence
gaattcactgtgtagactaggctggctcaaactcacagagatcctcctgc
ctctgccttctgagtgggacttaagctgagatttaagactcagctgaatg
aattctttttttcttttatttaagcatttaaaatttttcttatatgcaca
tgggtgttttgcctgcacgtgtgtctatgcatcatgcgtgtgtctggtgt
cttcagaagccaagaggacatcagttctcctgggactggagggataaaca
gttgtgagcaaccatgtgggagcggagtgctctgtcagtgctcttagccg
ctgagccatctctccagcctcccacaagtgatcagtgaatacattctcac
tgtaaaactgtaaacaacccagatgaagtgccctggtcactctgctgcac
agactgcaggcttggcagggagtgagctgggaaccactggggcagcctca
gagcagcactgccttcagaaagcctctggcctcaaaacacccaaagtaga
gagaaccaagtgctcctgatgtttgccccatggacagacccctgtatatg
tgctgatgttagttcaggtgcctgtgtcattgattatttgtctgtctgaa
tgtccccaccaaaactgtcatgggcccctcccctgccctgactcctcggg
agggggatgggcagcctatcctgcttctactaccacctttcacctaaggg
tttaagcacatacatcccttccatccctcacacacacttgatacagtaga
tactgttctttgctggatggcaaatcacccatccatgagaggctcaaccc
taaccaagtagggtctgaaaactcggctctccaggaactgtctcattaag
aaataagaatgtgccagctgtggtagtgcacgcctttattccagcacttg
agaggcagaggcaggcagactttctagttcaaggccagcctggtctacat
tatgagttccaggatagtcagggctaacaagaaacccttgtctcaaaaag
agacaagaaattagcacagctggcacttgcacaatcctatattctctcca
gctacgcaggaggcttgaggcaggagattccacagttcaagg
gaattctttgccatctggaaatatttttagttggtatgcctgcctcattc
cattgtgattttcatgttctgtgttcataagaagggtatacagctaaatc
tcttggaagttgattatggctttagattaggacaataaacttagatgtct
cagcttcacctttattcagaaatagctgtcacacatgtggcagagtgcta
gttagtgtactgaggtttctcagtgagatttgaatataagaaaactctag
atacagataagaaagaaggaacatacacaataataagtgtagacacttac
tgtgtataaagaaaggaagatatttagagatgcaggtaagattattctaa
tgatttctacaaaagctttaactagtcatcctttatcctgacctctagta
ttgtgattttcctttgttcctattttaaagatatttctttaaacgtgacc
ttagcgagcgatattccttgtattgttattttcgttgaatgtaattcagc
acaatgaatagacatgttgcttatatagctctaacatgtgtatgaaaagc
acagtaaaataataaaggatacttcccaaggacttggaaaggatttcatc
attctttataatgttggtgttttaagttaaacatacttctaattgccttg
tgtgaatgaagaagctttatgaacctcttaaactttcataagcaaactaa
taggcttttattaattatgggcacaagaagcatattaattaaaaaatgta
aagtcatttggtgggaagccacctttagtttgccatagaaccatcccagc
ttaaaggggcttgcataaatactatgaaaattgcttgagttcatgggcag
aaatacatgaaatcatataggggacagttgtaatcccaatacttagattc
atgggcttgaaattctatatcaccaaatctgtttcaaaagctgagatccc
agtagtgatatgagcaaattacagtgtgattgtagagcatacatttatct
gagcatcatgagcagaggcaggtggatctctgggtcaaggcagcctgggt
ccacagagtggagttcttgccagtcaaggctaatacagaagaatcctgct
caaggaaaaatataaaggatttatttttcagagattcggttttttgcgtt
ggtacaccatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33993184_33994281
seq2: B6Ng01-092L09.b_47_1138

seq1  GAATTCACTGTGTAGACTAGGCTGGCTCAAACTCACAGAGATCCTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGACTAGGCTGGCTCAAACTCACAGAGATCCTCCTGC  50

seq1  CTCTGCCTTCTGAGTGGGACTTAAGCTGAGATTTAAGACTCAGCTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCTGAGTGGGACTTAAGCTGAGATTTAAGACTCAGCTGAATG  100

seq1  AATTCTTTTTTTCTTTTATTTAAGCATTTAAAATTTTTCTTATATGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTTTTCTTTTATTTAAGCATTTAAAATTTTTCTTATATGCACA  150

seq1  TGGGTGTTTTGCCTGCACGTGTGTCTATGCATCATGCGTGTGTCTGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTGCCTGCACGTGTGTCTATGCATCATGCGTGTGTCTGGTGT  200

seq1  CTTCAGAAGCCAAGAGGACATCAGTTCTCCTGGGACTGGAGGGATAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGCCAAGAGGACATCAGTTCTCCTGGGACTGGAGGGATAAACA  250

seq1  GTTGTGAGCAACCATGTGGGAGCGGAGTGCTCTGTCAGTGCTCTTAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCAACCATGTGGGAGCGGAGTGCTCTGTCAGTGCTCTTAGCCG  300

seq1  CTGAGCCATCTCTCCAGCCTCCCACAAGTGATCAGTGAATACATTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATCTCTCCAGCCTCCCACAAGTGATCAGTGAATACATTCTCAC  350

seq1  TGTAAAACTGTAAACAACCCAGATGAAGTGCCCTGGTCACTCTGCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACTGTAAACAACCCAGATGAAGTGCCCTGGTCACTCTGCTGCAC  400

seq1  AGACTGCAGGCTTGGCAGGGAGTGAGCTGGGAACCACTGGGGCAGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAGGCTTGGCAGGGAGTGAGCTGGGAACCACTGGGGCAGCCTCA  450

seq1  GAGCAGCACTGCCTTCAGAAAGCCTCTGGCCTCAAAACACCCAAAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCACTGCCTTCAGAAAGCCTCTGGCCTCAAAACACCCAAAGTAGA  500

seq1  GAGAACCAAGTGCTCCTGATGTTTGCCCCATGGACAGACCCCTGTATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAAGTGCTCCTGATGTTTGCCCCATGGACAGACCCCTGTATATG  550

seq1  TGCTGATGTTAGTTCAGGTGCCTGTGTCATTGATTATTTGTCTGTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTTAGTTCAGGTGCCTGTGTCATTGATTATTTGTCTGTCTGAA  600

seq1  TGTCCCCACCAAAACTGTCATGGGCCCCTCCCCTGCCCTGACTCCTCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCACCAAAACTGTCATGGGCCCCTCCCCTGCCCTGACTCCTCGGG  650

seq1  AGGGGGATGGGCAGCCTATCCTGCTTCTACTACCACC-TTCACCTAAGGG  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGGGGATGGGCAGCCTATCCTGCTTCTACTACCACCTTTCACCTAAGGG  700

seq1  TTTAAGCACATACATCCCTTCCATCCCTCACACACACTTGATACAGTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCACATACATCCCTTCCATCCCTCACACACACTTGATACAGTAGA  750

seq1  TACTGTTCTTTGCTGGATGGCAAATCACCCATCCATGAGAGGCTCAACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCTTTGCTGGATGGCAAATCACCCATCCATGAGAGGCTCAACCC  800

seq1  TAACCAAGTAGGGTCTGAAAACTCGGCTCCCCAGGAACTGTCTCATTAAG  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAACCAAGTAGGGTCTGAAAACTCGGCTCTCCAGGAACTGTCTCATTAAG  850

seq1  AAATAAGAATGTGCCAAGCTGTGGTAGTGCACGCCTTTAATTCCAGCACT  899
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  AAATAAGAATGTGCC-AGCTGTGGTAGTGCACGCCTTT-ATTCCAGCACT  898

seq1  TGAGAGGCAGAGGCAGGCAGACCTTCTAGTTCAAGGCCAGCCTGGCCTAC  949
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TGAGAGGCAGAGGCAGGCAGACTTTCTAGTTCAAGGCCAGCCTGGTCTAC  948

seq1  ATAATGAGTTCCAGGATAGTCAGGGCTAAACAAAGAAACCC-TGTCCCAA  998
      || ||||||||||||||||||||||||||   ||||||||| |||| |||
seq2  ATTATGAGTTCCAGGATAGTCAGGGCTAA--CAAGAAACCCTTGTCTCAA  996

seq1  AAAGAGACAAGAAATAAGCACAAGCTGGCACATAGCACAAACCTATAATC  1048
      ||||||||||||||| ||||| ||||||||| | |||||| |||||| ||
seq2  AAAGAGACAAGAAATTAGCAC-AGCTGGCAC-TTGCACAATCCTATATTC  1044

seq1  CCTCCCAGCTACGCAGGAGGC-TGAGGCAGGAGGATCACACAAGTTCAAG  1097
       || ||||||||||||||||| |||||||||| |||  ||| ||||||||
seq2  TCT-CCAGCTACGCAGGAGGCTTGAGGCAGGA-GATTCCAC-AGTTCAAG  1091

seq1  G  1098
      |
seq2  G  1092

seq1: chr2_34129805_34130987
seq2: B6Ng01-092L09.g_69_1232 (reverse)

seq1  GCATATGGTGTACAAACAGACAAAATAAACAGAAATCTTTGAAAATATAA  50
      ||||||||||||| |||   ||||  |||| | ||||| |||||| ||||
seq2  GCATATGGTGTACCAAC--GCAAA--AAACCG-AATCTCTGAAAA-ATAA  44

seq1  TCCTTTTATATTTTTTCCCCTTGAGGCAGGGTTTCTCTGTA-TAGCCCTG  99
        | |||||||||||   |||||| ||||| ||  |||||| ||||| ||
seq2  ATCCTTTATATTTTT---CCTTGA-GCAGGATTCTTCTGTATTAGCCTTG  90

seq1  GCTGTGCAGGAACT-CACTCTGTGGACACCAGCCTGGCCTTGAACTCAGA  148
       ||| ||| ||||| |||||||||||| |||| || |||||| || ||||
seq2  ACTG-GCAAGAACTCCACTCTGTGGAC-CCAGGCT-GCCTTG-ACCCAGA  136

seq1  GATCCACCTGCCTCTGCCTCATGATTGCTCAGATTAAATGTATGCTCTAC  198
      |||||||||||||||| ||||||| |||||||| ||||||||||||||||
seq2  GATCCACCTGCCTCTG-CTCATGA-TGCTCAGA-TAAATGTATGCTCTAC  183

seq1  AATCACCACTGTAATTTTGCTCATATCACTACTGGGATCCTCAGCTTTTT  248
      ||||| |||||||| ||||||||||||||||||||||| |||||| ||||
seq2  AATCA-CACTGTAA-TTTGCTCATATCACTACTGGGAT-CTCAGC-TTTT  229

seq1  GAAACAGATTTGGTGATATAGAATTTCAAGCCCATGAATCTAAGTATTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGATTTGGTGATATAGAATTTCAAGCCCATGAATCTAAGTATTGG  279

seq1  GATTACAACTGTCCCCTATATGATTTCATGTATTTCTGCCCATGAACTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAACTGTCCCCTATATGATTTCATGTATTTCTGCCCATGAACTCA  329

seq1  AGCAATTTTCATAGTATTTATGCAAGCCCCTTTAAGCTGGGATGGTTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTCATAGTATTTATGCAAGCCCCTTTAAGCTGGGATGGTTCTA  379

seq1  TGGCAAACTAAAGGTGGCTTCCCACCAAATGACTTTACATTTTTTAATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAACTAAAGGTGGCTTCCCACCAAATGACTTTACATTTTTTAATTA  429

seq1  ATATGCTTCTTGTGCCCATAATTAATAAAAGCCTATTAGTTTGCTTATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTCTTGTGCCCATAATTAATAAAAGCCTATTAGTTTGCTTATGA  479

seq1  AAGTTTAAGAGGTTCATAAAGCTTCTTCATTCACACAAGGCAATTAGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGAGGTTCATAAAGCTTCTTCATTCACACAAGGCAATTAGAAG  529

seq1  TATGTTTAACTTAAAACACCAACATTATAAAGAATGATGAAATCCTTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAACTTAAAACACCAACATTATAAAGAATGATGAAATCCTTTCC  579

seq1  AAGTCCTTGGGAAGTATCCTTTATTATTTTACTGTGCTTTTCATACACAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTGGGAAGTATCCTTTATTATTTTACTGTGCTTTTCATACACAT  629

seq1  GTTAGAGCTATATAAGCAACATGTCTATTCATTGTGCTGAATTACATTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGCTATATAAGCAACATGTCTATTCATTGTGCTGAATTACATTCA  679

seq1  ACGAAAATAACAATACAAGGAATATCGCTCGCTAAGGTCACGTTTAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAATAACAATACAAGGAATATCGCTCGCTAAGGTCACGTTTAAAGA  729

seq1  AATATCTTTAAAATAGGAACAAAGGAAAATCACAATACTAGAGGTCAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTAAAATAGGAACAAAGGAAAATCACAATACTAGAGGTCAGGA  779

seq1  TAAAGGATGACTAGTTAAAGCTTTTGTAGAAATCATTAGAATAATCTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATGACTAGTTAAAGCTTTTGTAGAAATCATTAGAATAATCTTAC  829

seq1  CTGCATCTCTAAATATCTTCCTTTCTTTATACACAGTAAGTGTCTACACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTCTAAATATCTTCCTTTCTTTATACACAGTAAGTGTCTACACT  879

seq1  TATTATTGTGTATGTTCCTTCTTTCTTATCTGTATCTAGAGTTTTCTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTGTATGTTCCTTCTTTCTTATCTGTATCTAGAGTTTTCTTAT  929

seq1  ATTCAAATCTCACTGAGAAACCTCAGTACACTAACTAGCACTCTGCCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCTCACTGAGAAACCTCAGTACACTAACTAGCACTCTGCCACA  979

seq1  TGTGTGACAGCTATTTCTGAATAAAGGTGAAGCTGAGACATCTAAGTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACAGCTATTTCTGAATAAAGGTGAAGCTGAGACATCTAAGTTTA  1029

seq1  TTGTCCTAATCTAAAGCCATAATCAACTTCCAAGAGATTTAGCTGTATAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAATCTAAAGCCATAATCAACTTCCAAGAGATTTAGCTGTATAC  1079

seq1  CCTTCTTATGAACACAGAACATGAAAATCACAATGGAATGAGGCAGGCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTATGAACACAGAACATGAAAATCACAATGGAATGAGGCAGGCAT  1129

seq1  ACCAACTAAAAATATTTCCAGATGGCAAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  ACCAACTAAAAATATTTCCAGATGGCAAAGAATTC  1164