BAC Information

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BAC

Clone NameB6Ng01-093C18
Chromosome2 (Build37)
Map Location 32,114,752 - 32,261,916
singlet/doubletdoublet
Overlap geneUck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671
Upstream geneFreq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1
Downstream geneSlc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093C18.bB6Ng01-093C18.g
ACCDH904730DH904731
length1,207473
definitionDH904730|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C18, 5' end.DH904731|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,114,752 - 32,115,985)(32,261,438 - 32,261,916)
sequence
gaattcagcaaaccctacctttctgtgggcccactaccaagggaaatgag
ggtaatgtttcacggagccccattgctgctgcattcaatccccgcccccc
ttggcagttggtgtccagcagttctctctggacagcctcagtctggcact
ttgcatcctatgtacacatccctggacagcctcggtggcagtctgcatcc
aacaaacatctcctacagccctggtccagcagtctgcatccatacacatc
tctgtatctgtctggcagtctgcaatctctgtagagcccatatctcacag
cagtttatcctctacccccagctctccaggcagacattctccaggtacct
gggtggtcaaaattgtactgtcccttcaaagccttggccttctgctcggc
cgtcagaaccttgtagaagcagtcctggctcaggatgaccaacttgcgct
gccggcggtccacttcgttctgtcccagcagctccatgatcttctcacac
actgttgactggggacagaaggtgccaaaagtgagcttgtgcactgagtg
acccgccagcccctggggacgacccccttagctgctagcaacaggtgccg
cggttgggccagaggcaatggcgccccaaccagcggcctggcaatccctc
cgcgaggcccaggcgcagggcgctcaccttgccactagcggtgccgccgc
tcacgccgatgaggaacggccgcggctggggacgatcggcctcgggcgcg
gcgctctccgagccgccgcctcccgccgaagccatatccggagcgacgga
catacattcaccgactctgcccgctcccgcctggacgtagtgacggatgc
tgtgcgcatcgcttccggggacatgagcgcatgcgcgcatgagcgcgcac
tcaaggccgtgtccctgaagagcctcagtgactccagatgaccctttacc
tggaggcggggcctggatggggctcacctcccgacgagacgcacactcag
tgctggactagacaaagtctccgcccactgaccctatttctctagcacag
ccgaaatctgtcactcacagggtaggacgtccctgcctattgcttaaccc
catcatgcctcctggccagggaacgtgtctacctggagaacataggagac
tcccttcctggcgcatattaggattctggatcgttaaacatctggattta
gacagat
aggactctcaaagccccacaatgacgcccagctctcctcagcaacagact
gaaggcttcggacaaatttcagctggttaacaccatggtggacaggcttg
ccataagttgcacccttaggaactgggcgtttacgaccaccacggcggac
atgaatcctgtaaatgacatagctttgcttagccttgtaccccagtcttt
gagctttatcaggccgggtggggcggggagccctgtgcaactggcggtat
tgccagcagcggaccctcagaagaaagcgcatcacataggactgcttctt
tctccatagctccaggatgtatttgtatgcacccatcttggctcacctga
tggctgccgccagaggaaagcatcttctaaatatttttaagtggaaattt
gacaaaaacaggaaaaatcccttagccctccctgggggctctctctctct
ctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32114752_32115985
seq2: B6Ng01-093C18.b_32_1238

seq1  GAATTCAGCAAACCCTACCTTTCTGTGGGCCCACTACCAAGGGAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAACCCTACCTTTCTGTGGGCCCACTACCAAGGGAAATGAG  50

seq1  GGTAATGTTTCACGGAGCCCCATTGCTGCTGCATTCAATCCCCGCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTTTCACGGAGCCCCATTGCTGCTGCATTCAATCCCCGCCCCCC  100

seq1  TTGGCAGTTGGTGTCCAGCAGTTCTCTCTGGACAGCCTCAGTCTGGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTTGGTGTCCAGCAGTTCTCTCTGGACAGCCTCAGTCTGGCACT  150

seq1  TTGCATCCTATGTACACATCCCTGGACAGCCTCGGTGGCAGTCTGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCTATGTACACATCCCTGGACAGCCTCGGTGGCAGTCTGCATCC  200

seq1  AACAAACATCTCCTACAGCCCTGGTCCAGCAGTCTGCATCCATACACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATCTCCTACAGCCCTGGTCCAGCAGTCTGCATCCATACACATC  250

seq1  TCTGTATCTGTCTGGCAGTCTGCAATCTCTGTAGAGCCCATATCTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTGTCTGGCAGTCTGCAATCTCTGTAGAGCCCATATCTCACAG  300

seq1  CAGTTTATCCTCTACCCCCAGCTCTCCAGGCAGACATTCTCCAGGTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATCCTCTACCCCCAGCTCTCCAGGCAGACATTCTCCAGGTACCT  350

seq1  GGGTGGTCAAAATTGTACTGTCCCTTCAAAGCCTTGGCCTTCTGCTCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCAAAATTGTACTGTCCCTTCAAAGCCTTGGCCTTCTGCTCGGC  400

seq1  CGTCAGAACCTTGTAGAAGCAGTCCTGGCTCAGGATGACCAACTTGCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGAACCTTGTAGAAGCAGTCCTGGCTCAGGATGACCAACTTGCGCT  450

seq1  GCCGGCGGTCCACTTCGTTCTGTCCCAGCAGCTCCATGATCTTCTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCGGTCCACTTCGTTCTGTCCCAGCAGCTCCATGATCTTCTCACAC  500

seq1  ACTGTTGACTGGGGACAGAAGGTGCCAAAAGTGAGCTTGTGCACTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGACTGGGGACAGAAGGTGCCAAAAGTGAGCTTGTGCACTGAGTG  550

seq1  ACCCGCCAGCCCCTGGGGACGACCCCCTTAGCTGCTAGCAACAGGTGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCAGCCCCTGGGGACGACCCCCTTAGCTGCTAGCAACAGGTGCCG  600

seq1  CGGTTGGGCCAGAGGCAATGGCGCCCCAACCAGCGGCCTGGCAATCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGGCCAGAGGCAATGGCGCCCCAACCAGCGGCCTGGCAATCCCTC  650

seq1  CGCGAGGCCCAGGCGCAGGGCGCTCACCTTGCCACTAGCGGTGCCGCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGCCCAGGCGCAGGGCGCTCACCTTGCCACTAGCGGTGCCGCCGC  700

seq1  TCACGCCGATGAGGAACGGCCGCGGCTGGGGACGATCGGCCTCGGGCGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCGATGAGGAACGGCCGCGGCTGGGGACGATCGGCCTCGGGCGCG  750

seq1  GCGCTCTCCGAGCCGCCGCCTCCCGCCGAAGCCATATCCGGAGCGACGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCTCCGAGCCGCCGCCTCCCGCCGAAGCCATATCCGGAGCGACGGA  800

seq1  CATACATTCACCGACTCTGCCCGCTCCCGCCTGGACGTAGTGACGGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCACCGACTCTGCCCGCTCCCGCCTGGACGTAGTGACGGATGC  850

seq1  TGTGCGCATCGCTTCCGGGGACATGAGCGCATGCGCGCATGAGGCGCGGC  900
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TGTGCGCATCGCTTCCGGGGACATGAGCGCATGCGCGCATGA-GCGC-GC  898

seq1  ACTCAAGGCCGTGTCCCTGAAGAGCCTCAGTGACTCCAGAATGACCCCTT  950
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  ACTCAAGGCCGTGTCCCTGAAGAGCCTCAGTGACTCCAG-ATGA-CCCTT  946

seq1  TACCTGGAGGCGGGGCCTGGATGGGGCTCCACCTCCCGACGAGACGCACA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACCTGGAGGCGGGGCCTGGATGGGGCT-CACCTCCCGACGAGACGCACA  995

seq1  CTCAAGTGCTGGACTAGACCAAGGTCTCCAGCCCACTGACCCCTATTTCC  1050
      ||| |||||||||||||| ||| |||||| ||||||||| ||||||||| 
seq2  CTC-AGTGCTGGACTAGA-CAAAGTCTCC-GCCCACTGA-CCCTATTTCT  1041

seq1  CTAGCACAGCCGAGATCCTGTCACCCACAGGGTTAGGACCGTCCCTGCCT  1100
      ||||||||||||| || ||||||| ||||||| ||||| |||||||||||
seq2  CTAGCACAGCCGAAAT-CTGTCACTCACAGGG-TAGGA-CGTCCCTGCCT  1088

seq1  TATGCTTAACCCCATCAGTGCCTCCT-GCCACGTGAGAACGTGTCATCCT  1149
        ||||||||||||||| |||||||| ||||   | |||||||||  |||
seq2  ATTGCTTAACCCCATCA-TGCCTCCTGGCCA---GGGAACGTGTCTACCT  1134

seq1  -GAGACACTTAGGAAGACCTCCCTCTCCCTGGCGCATTATTTAAGTATCT  1198
       |||| || |||| ||| ||||  || ||||||||| ||||  || || |
seq2  GGAGA-ACATAGG-AGA-CTCC--CTTCCTGGCGCA-TATT--AGGAT-T  1175

seq1  ATGAATCTGTTAAAATCTCTTGATTTTTAGACAGAT  1234
       || ||| ||| |||  ||| ||  |||||||||||
seq2  CTGGATC-GTT-AAACATCTGGA--TTTAGACAGAT  1207

seq1: chr2_32261438_32261916
seq2: B6Ng01-093C18.g_69_547 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCCCAGGGAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCCCAGGGAGGGCT  50

seq1  AAGGGATTTTTCCTGTTTTTGTCAAATTTCCACTTAAAAATATTTAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTTTTCCTGTTTTTGTCAAATTTCCACTTAAAAATATTTAGAAG  100

seq1  ATGCTTTCCTCTGGCGGCAGCCATCAGGTGAGCCAAGATGGGTGCATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCTCTGGCGGCAGCCATCAGGTGAGCCAAGATGGGTGCATACA  150

seq1  AATACATCCTGGAGCTATGGAGAAAGAAGCAGTCCTATGTGATGCGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCCTGGAGCTATGGAGAAAGAAGCAGTCCTATGTGATGCGCTTT  200

seq1  CTTCTGAGGGTCCGCTGCTGGCAATACCGCCAGTTGCACAGGGCTCCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGGTCCGCTGCTGGCAATACCGCCAGTTGCACAGGGCTCCCCG  250

seq1  CCCCACCCGGCCTGATAAAGCTCAAAGACTGGGGTACAAGGCTAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCGGCCTGATAAAGCTCAAAGACTGGGGTACAAGGCTAAGCAAA  300

seq1  GCTATGTCATTTACAGGATTCATGTCCGCCGTGGTGGTCGTAAACGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCATTTACAGGATTCATGTCCGCCGTGGTGGTCGTAAACGCCCA  350

seq1  GTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCCACCATGGTGTTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCCACCATGGTGTTAACCA  400

seq1  GCTGAAATTTGTCCGAAGCCTTCAGTCTGTTGCTGAGGAGAGCTGGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATTTGTCCGAAGCCTTCAGTCTGTTGCTGAGGAGAGCTGGGCGT  450

seq1  CATTGTGGGGCTTTGAGAGTCCTGAATTC  479
      |||||||||||||||||||||||||||||
seq2  CATTGTGGGGCTTTGAGAGTCCTGAATTC  479