BAC Information

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BAC

Clone NameB6Ng01-093E07
Chromosome2 (Build37)
Map Location 43,437,297 - 43,545,693
singlet/doubletdoublet
Overlap geneKynu
Upstream geneLrp1b, LOC100041228, LOC100041245
Downstream geneArhgap15, Gtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E07.bB6Ng01-093E07.g
ACCDH904802DH904803
length1,1401,089
definitionDH904802|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E07, 5' end.DH904803|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,544,550 - 43,545,693)(43,437,297 - 43,438,399)
sequence
gaattccctggtactggatatacggacagttataagtcctctgacaagtg
tgctggaatctgaacttaggtaccccagaagtcatccactctcttaactg
ctaagccatctcttcagctctcatttttcataatgtaattgggtcttctc
aactttccttgcaggtgagtctctaaaggcggggcagttcttcactaggc
agtacattagatgcccgtggctgtagaaactgccttctaactgaaggaca
ataaaattaaacttgtacatttggaaaactggaagttatttaaggtgggt
tcttctaaatgtttatttctgaaatcttctgtagactctggtctggacca
gattcgatctaaggtgttgatatcagctctgcttttgataccacaccttt
acctactgaggcagaggaatgcgccatgtggatagtcacatacacgcttt
gttcttcaggatcacagaggattggactttcctctttaagagacaaggag
gtttcttgacgttttaatgccacttagtaaggaataattagagaaagttt
agtcacagtcattgtcaagaatctcataaccggtaccaatctttgcccca
cccctcctccccttgattaactactcaatttatagcaatgactgagtcat
taatgcttttgctcctaaccctcactgtaaggaccttgcttgttcttctg
cctacttagcattgtaaaacagagaataaattctgtgaaactgtcagtgc
taaggagaccatataactccataatctcttgcaattgactcatgcccata
gaaccactggggaatgtgacaggactccagaccacagtaggcttcagacc
ttagcactactgatgccatgatggaggtactaccagactttgaacaaaga
cctaagccatcaaagttcctacttctgtgaagtccctaagtgttctgtct
ttgctcttcagcttctctgattgggcttctggtacggttcttgctactga
ggagtgtcagtgcagatgtgtatttttgtgttaaaactccattcttgaaa
aatgctggtgactgatctttgatccgcaaccctcagtacaattgccagct
agctattacagaactttctatgctcctttttctataaagt
gaattcatgaccaagttaagaatgccatcaaaaataggaaatacaggctt
gttaagataataataggctgggtgacactgatgatcatggattactgagt
ggtatgtattatctgatcttagcatttaacctcttccggtttcctcctga
ggagtagacagttaagagacatatatttccaggcttgacatatatggatt
cttacttgagaaaccttctccctcctgtctctacgtttatttatgttata
gttttctaatggtcaatccttcctcccgcccttcctgagccctcatcttc
cataagctcgccttctctgacaggcgttatctcttactggcactgtatta
tgaacacatctctttaaacatttaaaacttttcattaacacatgacagct
gcatatattgatgagtgtgatatttttgaagctttttttattagatattt
tcttcatttacatttcaaatgctatcctgaaagtcccttataccctcccc
tggagtgtgatattttgatgtatgtttatgatatatactcaagaactcaa
gatagctgagactctcatctaattatcatttttgaaccttgagatctttt
agttttaaacaatcataatagcttattgtgaataacaatctcatcagtta
aaaaaacttcttagaacttactacttctgtgtaagttcagagacccattt
ttgactctctacacattccccttgagtagacaacttagaaacccctattt
tcatgactttcatgatcttaggtaaatcatctggttttatgtatcttctc
tctctctacagtaattacttataaaactgaaattagatatatttgttaaa
tatttgaatctcttgtcttatttctgaattgtaaccacagtattttaaag
agctccacctctgatcatatgaaaataaaaatcattatggaaatgattct
cccttgaagtcaggaacacatttcagaaagatgagccaatttaatacgat
ttttgaatcaggcatttgccactcataaaactcgttcatgacctttctcc
tttctgtgctccttcaactggcagctgtgatgctacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43544550_43545693
seq2: B6Ng01-093E07.b_45_1184 (reverse)

seq1  ACTTTAATAGAAAAGGGAGCCATAGAAAG-TCTGTATTAGCTAGCTGGCA  49
      ||||| |||||||| |||| ||||||||| |||||| |||||||||||||
seq2  ACTTT-ATAGAAAAAGGAG-CATAGAAAGTTCTGTAATAGCTAGCTGGCA  48

seq1  ATTGTACTGAGTGTTTGCGATCAAAGATCAGTCACCAGCATTTCTCAGGA  99
      ||||||||||| |||   ||||||||||||||||||||||||| ||| ||
seq2  ATTGTACTGAGGGTTGCGGATCAAAGATCAGTCACCAGCATTTTTCAAGA  98

seq1  --TGAGTTTTAAACACAAAAATACACATCCTGCACTGACACTCCTCAGTT  147
         ||||||| ||||||||||||||||| ||||||||||||||||||| |
seq2  ATGGAGTTTT-AACACAAAAATACACAT-CTGCACTGACACTCCTCAG-T  145

seq1  AGCAAGAACCGTTAACCAGAAGCCCAATCAGAGAAGCTGAAGAGCAAAGA  197
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACCGT--ACCAGAAGCCCAATCAGAGAAGCTGAAGAGCAAAGA  193

seq1  CAGTACACTTAGGGACTTCACAGAAGTAGGAACTTTGATGGCTTAGGTCT  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTTAGGGACTTCACAGAAGTAGGAACTTTGATGGCTTAGGTCT  243

seq1  TTGTTCAAAGTCTGGTAGTACCTCCATCATGGCATCAGTAGTGCTAAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAAGTCTGGTAGTACCTCCATCATGGCATCAGTAGTGCTAAGGT  293

seq1  CTGAAGCCTACTGTGGTCTGGAGTCCTGTCACATTCCCCAGTGGTTCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTACTGTGGTCTGGAGTCCTGTCACATTCCCCAGTGGTTCTAT  343

seq1  GGGCATGAGTCAATTGCAAGGGATTATGGAGTTATATGGTCTCCTTAGCA  397
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGCATGAGTCAATTGCAAGAGATTATGGAGTTATATGGTCTCCTTAGCA  393

seq1  CTGACAGTTTCACAGAATTTATTCTCTGTTTTACAATGCTAAGTAGGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTTCACAGAATTTATTCTCTGTTTTACAATGCTAAGTAGGCAG  443

seq1  AAGAACAAGCAAGGTCCTTACAGTGAGGGTTAGGAGCAAAAGCATTAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGCAAGGTCCTTACAGTGAGGGTTAGGAGCAAAAGCATTAATG  493

seq1  ACTCAGTCATTGCTATAAATTGAGTAGTTAATCAAGGGGAGGAGGGGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCATTGCTATAAATTGAGTAGTTAATCAAGGGGAGGAGGGGTGG  543

seq1  GGCAAAGATTGGTACCGGTTATGAGATTCTTGACAATGACTGTGACTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGATTGGTACCGGTTATGAGATTCTTGACAATGACTGTGACTAAA  593

seq1  CTTTCTCTAATTATTCCTTACTAAGTGGCATTAAAACGTCAAGAAACCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAATTATTCCTTACTAAGTGGCATTAAAACGTCAAGAAACCTC  643

seq1  CTTGTCTCTTAAAGAGGAAAGTCCAATCCTCTGTGATCCTGAAGAACAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCTTAAAGAGGAAAGTCCAATCCTCTGTGATCCTGAAGAACAAA  693

seq1  GCGTGTATGTGACTATCCACATGGCGCATTCCTCTGCCTCAGTAGGTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTATGTGACTATCCACATGGCGCATTCCTCTGCCTCAGTAGGTAAA  743

seq1  GGTGTGGTATCAAAAGCAGAGCTGATATCAACACCTTAGATCGAATCTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTATCAAAAGCAGAGCTGATATCAACACCTTAGATCGAATCTGG  793

seq1  TCCAGACCAGAGTCTACAGAAGATTTCAGAAATAAACATTTAGAAGAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCAGAGTCTACAGAAGATTTCAGAAATAAACATTTAGAAGAACC  843

seq1  CACCTTAAATAACTTCCAGTTTTCCAAATGTACAAGTTTAATTTTATTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAAATAACTTCCAGTTTTCCAAATGTACAAGTTTAATTTTATTGT  893

seq1  CCTTCAGTTAGAAGGCAGTTTCTACAGCCACGGGCATCTAATGTACTGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTAGAAGGCAGTTTCTACAGCCACGGGCATCTAATGTACTGCC  943

seq1  TAGTGAAGAACTGCCCCGCCTTTAGAGACTCACCTGCAAGGAAAGTTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGAACTGCCCCGCCTTTAGAGACTCACCTGCAAGGAAAGTTGAG  993

seq1  AAGACCCAATTACATTATGAAAAATGAGAGCTGAAGAGATGGCTTAGCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAATTACATTATGAAAAATGAGAGCTGAAGAGATGGCTTAGCAG  1043

seq1  TTAAGAGAGTGGATGACTTCTGGGGTACCTAAGTTCAGATTCCAGCACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAGTGGATGACTTCTGGGGTACCTAAGTTCAGATTCCAGCACAC  1093

seq1  TTGTCAGAGGACTTATAACTGTCCGTATATCCAGTACCAGGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGAGGACTTATAACTGTCCGTATATCCAGTACCAGGGAATTC  1140

seq1: chr2_43437297_43438399
seq2: B6Ng01-093E07.g_68_1156

seq1  GAATTCATGACCAAGTTAAGAATGCCATCAAAAATAGGAAATACAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCAAGTTAAGAATGCCATCAAAAATAGGAAATACAGGCTT  50

seq1  GTTAAGATAATAATAGGCTGGGTGACACTGATGATCATGGATTACTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATAATAATAGGCTGGGTGACACTGATGATCATGGATTACTGAGT  100

seq1  GGTATGTATTATCTGATCTTAGCATTTAACCTCTTCCGGTTTCCTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTATTATCTGATCTTAGCATTTAACCTCTTCCGGTTTCCTCCTGA  150

seq1  GGAGTAGACAGTTAAGAGACATATATTTCCAGGCTTGACATATATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGACAGTTAAGAGACATATATTTCCAGGCTTGACATATATGGATT  200

seq1  CTTACTTGAGAAACCTTCTCCCTCCTGTCTCTACGTTTATTTATGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGAGAAACCTTCTCCCTCCTGTCTCTACGTTTATTTATGTTATA  250

seq1  GTTTTCTAATGGTCAATCCTTCCTCCCGCCCTTCCTGAGCCCTCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAATGGTCAATCCTTCCTCCCGCCCTTCCTGAGCCCTCATCTTC  300

seq1  CATAAGCTCGCCTTCTCTGACAGGCGTTATCTCTTACTGGCACTGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTCGCCTTCTCTGACAGGCGTTATCTCTTACTGGCACTGTATTA  350

seq1  TGAACACATCTCTTTAAACATTTAAAACTTTTCATTAACACATGACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATCTCTTTAAACATTTAAAACTTTTCATTAACACATGACAGCT  400

seq1  GCATATATTGATGAGTGTGATATTTTTGAAGCTTTTTTTATTAGATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTGATGAGTGTGATATTTTTGAAGCTTTTTTTATTAGATATTT  450

seq1  TCTTCATTTACATTTCAAATGCTATCCTGAAAGTCCCTTATACCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTACATTTCAAATGCTATCCTGAAAGTCCCTTATACCCTCCCC  500

seq1  TGGAGTGTGATATTTTGATGTATGTTTATGATATATACTCAAGAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGATATTTTGATGTATGTTTATGATATATACTCAAGAACTCAA  550

seq1  GATAGCTGAGACTCTCATCTAATTATCATTTTTGAACCTTGAGATCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTGAGACTCTCATCTAATTATCATTTTTGAACCTTGAGATCTTTT  600

seq1  AGTTTTAAACAATCATAATAGCTTATTGTGAATAACAATCTCATCAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAACAATCATAATAGCTTATTGTGAATAACAATCTCATCAGTTA  650

seq1  AAAAAACTTCTTAGAACTTACTACTTCTGTGTAAGTTCAGAGACCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTCTTAGAACTTACTACTTCTGTGTAAGTTCAGAGACCCATTT  700

seq1  TTGACTCTCTACACATTCCCCTTGAGTAGACAACTTAGAAACCCCTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCTACACATTCCCCTTGAGTAGACAACTTAGAAACCCCTATTT  750

seq1  TCATGACTTTCATGATCTTAGGTAAATCATCTGGTTTTATGTATCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTTTCATGATCTTAGGTAAATCATCTGGTTTTATGTATCTTCTC  800

seq1  TCTCTCTACAGTAATTACTTATAAAACTGAAATTAGATATATTTGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTACAGTAATTACTTATAAAACTGAAATTAGATATATTTGTTAAA  850

seq1  TATTTGAATCTCTTGTCTTATTTCTGAATTGTAACCACAAGTATTTTAAA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTTGAATCTCTTGTCTTATTTCTGAATTGTAACCAC-AGTATTTTAAA  899

seq1  GAGCTCCACCTCTGATCATATGAAAATAAAAATCATTATGGAAATGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGCTCCACCTCTGATCATATGAAAATAAAAATCATTATGGAAATGATTC  949

seq1  TCCCTTGAAGGTCAGGAAACAACATTTCAGAAAGATGAAGCCACATTAAA  1000
      ||||||||| ||||||||   |||||||||||||||| ||||| ||| ||
seq2  TCCCTTGAA-GTCAGGAA--CACATTTCAGAAAGATG-AGCCA-ATTTAA  994

seq1  TACGAATTTTGAATCAGGCCATTTGGCACTCATAAAACCTTCCGTTTCAT  1050
      ||||| |||||||||||| |||||| ||||||||||||  ||   |||||
seq2  TACGATTTTTGAATCAGG-CATTTGCCACTCATAAAAC--TC--GTTCAT  1039

seq1  GACCTTTCCTCCTTTTCTGTGCTCCTTCATACTGGCAGCTGT-ATGCTTA  1099
      ||||||| |||| |||||||||||||||| |||||||||||| |||| ||
seq2  GACCTTT-CTCC-TTTCTGTGCTCCTTCA-ACTGGCAGCTGTGATGC-TA  1085

seq1  CTTC  1103
      ||||
seq2  CTTC  1089