BAC Information

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BAC

Clone NameB6Ng01-094A08
Chromosome2 (Build37)
Map Location 72,094,526 - 72,285,015
singlet/doubletdoublet
Overlap geneB230120H23Rik
Upstream geneDync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4, LOC100040270
Downstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094A08.bB6Ng01-094A08.g
ACCDH905350DH905351
length1,1241,151
definitionDH905350|Mus musculus domesticus DNA, BAC clone: B6Ng01-094A08, 5' end.DH905351|Mus musculus domesticus DNA, BAC clone: B6Ng01-094A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,094,526 - 72,095,646)(72,283,851 - 72,285,015)
sequence
gaattctccagaatgagcaagagacacatcctgagagcccctcggggcta
catcctgctttccaaccacacaggagaagcgatctgacttgtctaatgct
gccatgctgtagcttaggaatcatcagttatagtcaccctccttcattgt
tggcacgccagcaccaggctcacgtgaagaaataaccttggcgggaggct
acatcagggccctgacatcccttcccaggctgtttgcagcatgagactgt
gccatacgtagataggtttcactcggatgcgccggcgatgatataattga
atgaattgtttacttagcaccttatttggggtctggggtctggggagggt
attgaggataccgtaaaagtccaaattatacatcgtgttcctccatgttc
ataatctaacctctgaaggaatggaacctcaccacaacactatgaaacat
tatggctgtttcgtctgtaatttcggaatgatctatagaataatatgttt
acattgtaacttttaaaaactaacaaatcaggattgcatacataagaatg
ccactaagaaacaccaaggttcttaataccgccagcgttaagatagaaag
taacatttcagaagagcacaatatgcacaaaacattttttcaaaatttaa
atattttcctgggcattaaaaacgtttccactacaaatttattgttactg
atgaaaaaatgcatattttctggagttaaatgttattacaaaaatcttaa
ttttcagcaattgttttgcactttcagatagattgtaaataggttatgca
gtcaatgatatagagttatttatttgctacataatagacattgtgccaaa
taattcctttttatttattttattcagtatgaaattttggagtacatttt
ttctgttttcttaattagaccacatttaatgtataggaattgtatgtaca
tatctcttctgtaaataacagccagtatcttcattaaatatacttgaaaa
gaaatattttttattgttagtgtctttgatacaggaagtattaccctttc
attattgtgggccctgtataatttttcatttattcattgtgtggggtggc
ataaaccattattgacttgacatc
gaattccctactgggagcagcatttttagctctgggctgaaggttgactg
tggaagcaggttgggggtgtacaaagtttcagcagacaaaaggatgacta
atttgcatggctcaatggcctgaggaagctcgatacagaaaaggttcacg
agtttggtcacatgatcatcaccaccacagctgtgtactttgcagaccga
gtggatacccttgttactttgggagagccctgctggttaatcctgttgtt
tatgtgaacttgggcagaggatagcccacgtgaaggttttgctcactttt
tttctctcagccagaactgagagaaacacagctgttggtagggaaggaac
ttctccagtagtaagagaaacaccagttatcagcatctagtcttcatttt
aattgtgaatgaactgtaaggtcagagaagtctccagtttttattgtgtt
gacttggacagacatggccactggttaggcaataggcaagagactgcgaa
agaagccactggtatgagcaatgaatgtttggaaactctccgttgatttg
gccactccagtcacctcataaggcagaaaaggcaggtagatgggaagagc
taggccctgtcttgttctctcttctcctcaggccagacaggcttcaaggt
agttctccaagtcaacaatggcaagcaattgttcaaaggctcttgaagtg
cagtctctgttatctcagaattaagtcatgctgcatcctggacaagttca
tacaactagatcatgatgcctcctgatagcagcttctggaaccagagcta
cagagcataccacacctgtactaacttgtcaaggaggaaggattcgttat
agagatgggtcctggaaagcttgtaactatctcagactctgcattgcaag
agctgcagtggagtcggagcgccttgagctactctaggatgttttgacct
tggtatgttgaactactggatattttgaccactctcagagaccccaggat
attttgattctgtatttaaagataaacaattagaccagctttatagtatt
gagaaagtgattttggcattaaaacacgaagtaaattttttagctatatt
tcatgtatttaccttacaatttaaataaatcatgtatgtgtgtgttgtgt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72094526_72095646
seq2: B6Ng01-094A08.b_46_1169

seq1  GAATTCTCCAGAATGAGCAAGAGACACATCCTGAGAGCCCCTCGGGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGAATGAGCAAGAGACACATCCTGAGAGCCCCTCGGGGCTA  50

seq1  CATCCTGCTTTCCAACCACACAGGAGAAGCGATCTGACTTGTCTAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGCTTTCCAACCACACAGGAGAAGCGATCTGACTTGTCTAATGCT  100

seq1  GCCATGCTGTAGCTTAGGAATCATCAGTTATAGTCACCCTCCTTCATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTGTAGCTTAGGAATCATCAGTTATAGTCACCCTCCTTCATTGT  150

seq1  TGGCACGCCAGCACCAGGCTCACGTGAAGAAATAACCTTGGCGGGAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACGCCAGCACCAGGCTCACGTGAAGAAATAACCTTGGCGGGAGGCT  200

seq1  ACATCAGGGCCCTGACATCCCTTCCCAGGCTGTTTGCAGCATGAGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGGCCCTGACATCCCTTCCCAGGCTGTTTGCAGCATGAGACTGT  250

seq1  GCCATACGTAGATAGGTTTCACTCGGATGCGCCGGCGATGATATAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACGTAGATAGGTTTCACTCGGATGCGCCGGCGATGATATAATTGA  300

seq1  ATGAATTGTTTACTTAGCACCTTATTTGGGGTCTGGGGTCTGGGGAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTTTACTTAGCACCTTATTTGGGGTCTGGGGTCTGGGGAGGGT  350

seq1  ATTGAGGATACCGTAAAAGTCCAAATTATACATCGTGTTCCTCCATGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGATACCGTAAAAGTCCAAATTATACATCGTGTTCCTCCATGTTC  400

seq1  ATAATCTAACCTCTGAAGGAATGGAACCTCACCACAACACTATGAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAACCTCTGAAGGAATGGAACCTCACCACAACACTATGAAACAT  450

seq1  TATGGCTGTTTCGTCTGTAATTTCGGAATGATCTATAGAATAATATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGTTTCGTCTGTAATTTCGGAATGATCTATAGAATAATATGTTT  500

seq1  ACATTGTAACTTTTAAAAACTAACAAATCAGGATTGCATACATAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAACTTTTAAAAACTAACAAATCAGGATTGCATACATAAGAATG  550

seq1  CCACTAAGAAACACCAAGGTTCTTAATACCGCCAGCGTTAAGATAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGAAACACCAAGGTTCTTAATACCGCCAGCGTTAAGATAGAAAG  600

seq1  TAACATTTCAGAAGAGCACAATATGCACAAAACATTTTTTCAAAATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCAGAAGAGCACAATATGCACAAAACATTTTTTCAAAATTTAA  650

seq1  ATATTTTCCTGGGCATTAAAAACGTTTCCACTACAAATTTATTGTTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTGGGCATTAAAAACGTTTCCACTACAAATTTATTGTTACTG  700

seq1  ATGAAAAAATGCATATTTTCTGGAGTTAAATGTTATTACAAAAATCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAATGCATATTTTCTGGAGTTAAATGTTATTACAAAAATCTTAA  750

seq1  TTTTCAGCAATTGTTTTGCACTTTCAGATAGATTGTAAATAGGTTATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCAATTGTTTTGCACTTTCAGATAGATTGTAAATAGGTTATGCA  800

seq1  GTCAATGATATAGAGTTATTTATTTGCTACATAATAGACATTGTGCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGATATAGAGTTATTTATTTGCTACATAATAGACATTGTGCCAAA  850

seq1  TAATTCCTTTTTATTTATTTTATTCAGTATGAAATTTTGGAGTACATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTTTTTATTTATTTTATTCAGTATGAAATTTTGGAGTACATTTT  900

seq1  TTCTGTTTTCTTAATTAGACCACATTTAATGTATAGGAATTGTATGTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTCTTAATTAGACCACATTTAATGTATAGGAATTGTATGTACA  950

seq1  TATCTCTTCTGTAAATAACAGCCAGTATCTTCATTAAATATACTTGACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATCTCTTCTGTAAATAACAGCCAGTATCTTCATTAAATATACTTGAAAA  1000

seq1  GAAATA-TTTTTATTGTTAGTGTCTTTGATACAGGAAGTATTA-CCTTTC  1048
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAATATTTTTTATTGTTAGTGTCTTTGATACAGGAAGTATTACCCTTTC  1050

seq1  AATATTGTGGGCCCTGGTATATTTTTTCATTTATTCATTGTGTGGTGT-G  1097
      | ||||||||||||| ||||| ||||||||||||||||||||||| || |
seq2  ATTATTGTGGGCCCT-GTATAATTTTTCATTTATTCATTGTGTGGGGTGG  1099

seq1  CATAAAACCATTA-TGAC-TGACATC  1121
      ||| ||||||||| |||| |||||||
seq2  CAT-AAACCATTATTGACTTGACATC  1124

seq1: chr2_72283851_72285015
seq2: B6Ng01-094A08.g_68_1218 (reverse)

seq1  TACAC-ACACACACATACATGATTAATATAAAAATGGTAAATGTTACATA  49
      ||||| ||||||||||||||||||  |||  |||| ||||  | || |||
seq2  TACACAACACACACATACATGATT--TATTTAAATTGTAA--GGTAAATA  46

seq1  CATAGAAAATTAATTAGCTAAAAAAATTTTACTCTGTGTTTGTATTGCCA  99
      ||| ||||  ||  |||||||||||  ||||||  |||||| || |||| 
seq2  CAT-GAAA--TA--TAGCTAAAAAA--TTTACTTCGTGTTT-TAATGCC-  87

seq1  AAAATCAC-TTCTCAATACTTATATAGCTGGTCTAATTGTTTATCTATAA  148
      |||||||| |||||||||| |||| ||||||||||||||||||||| |||
seq2  AAAATCACTTTCTCAATAC-TATAAAGCTGGTCTAATTGTTTATCTTTAA  136

seq1  ATACAGAATCAAAATATCCTGGGGTCTTCTGAGAGTGGTCAAAATATCCA  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACAGAATCAAAATATCCTGGGGTC-TCTGAGAGTGGTCAAAATATCCA  185

seq1  GTAGTTCAACATACCAAGGTCAAAACATCCTAGAGTAGCTCAAGGCGCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAACATACCAAGGTCAAAACATCCTAGAGTAGCTCAAGGCGCTC  235

seq1  CGACTCCACTGCAGCTCTTGCAATGCAGAGTCCTGAGATAGTTACAAGCT  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGACTCCACTGCAGCTCTTGCAATGCAGAGT-CTGAGATAGTTACAAGCT  284

seq1  TTCCAGGACCCATCTCTATAACGAATCCTTCCTCCTTGACAAGTTAGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACCCATCTCTATAACGAATCCTTCCTCCTTGACAAGTTAGTAC  334

seq1  AGGTGTGGTATGCTCTGTAGCTCTGGTTCCAGAAGCTGCTATCAGGAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGTATGCTCTGTAGCTCTGGTTCCAGAAGCTGCTATCAGGAGGC  384

seq1  ATCATGATCTAGTTGTATGAACTTGTCCAGGATGCAGCATGACTTAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATCTAGTTGTATGAACTTGTCCAGGATGCAGCATGACTTAATTC  434

seq1  TGAGATAACAGAGACTGCACTTCAAGAGCCTTTGAACAATTGCTTGCCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAACAGAGACTGCACTTCAAGAGCCTTTGAACAATTGCTTGCCAT  484

seq1  TGTTGACTTGGAGAACTACCTTGAAGCCTGTCTGGCCTGAGGAGAAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTTGGAGAACTACCTTGAAGCCTGTCTGGCCTGAGGAGAAGAGA  534

seq1  GAACAAGACAGGGCCTAGCTCTTCCCATCTACCTGCCTTTTCTGCCTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACAGGGCCTAGCTCTTCCCATCTACCTGCCTTTTCTGCCTTAT  584

seq1  GAGGTGACTGGAGTGGCCAAATCAACGGAGAGTTTCCAAACATTCATTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACTGGAGTGGCCAAATCAACGGAGAGTTTCCAAACATTCATTGC  634

seq1  TCATACCAGTGGCTTCTTTCGCAGTCTCTTGCCTATTGCCTAACCAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAGTGGCTTCTTTCGCAGTCTCTTGCCTATTGCCTAACCAGTGG  684

seq1  CCATGTCTGTCCAAGTCAACACAATAAAAACTGGAGACTTCTCTGACCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTGTCCAAGTCAACACAATAAAAACTGGAGACTTCTCTGACCTT  734

seq1  ACAGTTCATTCACAATTAAAATGAAGACTAGATGCTGATAACTGGTGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATTCACAATTAAAATGAAGACTAGATGCTGATAACTGGTGTTT  784

seq1  CTCTTACTACTGGAGAAGTTCCTTCCCTACCAACAGCTGTGTTTCTCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTACTGGAGAAGTTCCTTCCCTACCAACAGCTGTGTTTCTCTCA  834

seq1  GTTCTGGCTGAGAGAAAAAAAGTGAGCAAAACCTTCACGTGGGCTATCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCTGAGAGAAAAAAAGTGAGCAAAACCTTCACGTGGGCTATCCT  884

seq1  CTGCCCAAGTTCACATAAACAACAGGATTAACCAGCAGGGCTCTCCCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAAGTTCACATAAACAACAGGATTAACCAGCAGGGCTCTCCCAAA  934

seq1  GTAACAAGGGTATCCACTCGGTCTGCAAAGTACACAGCTGTGGTGGTGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGGGTATCCACTCGGTCTGCAAAGTACACAGCTGTGGTGGTGAT  984

seq1  GATCATGTGACCAAACTCGTGAACCTTTTCTGTATCGAGCTTCCTCAGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTGACCAAACTCGTGAACCTTTTCTGTATCGAGCTTCCTCAGGC  1034

seq1  CATTGAGCCATGCAAATTAGTCATCCTTTTGTCTGCTGAAACTTTGTACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCCATGCAAATTAGTCATCCTTTTGTCTGCTGAAACTTTGTACA  1084

seq1  CCCCCAACCTGCTTCCACAGTCAACCTTCAGCCCAGAGCTAAAAATGCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCTGCTTCCACAGTCAACCTTCAGCCCAGAGCTAAAAATGCTG  1134

seq1  CTCCCAGTAGGGAATTC  1165
      |||||||||||||||||
seq2  CTCCCAGTAGGGAATTC  1151