BAC Information

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BAC

Clone NameB6Ng01-096P24
Chromosome2 (Build37)5 (Build37)
Map Location 128,486,966 - 128,487,461147,968,979 - 147,970,109
singlet/doubletsingletsinglet
Overlap geneAnapc1
Upstream geneLOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355
Downstream geneMertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P24.bB6Ng01-096P24.g
ACCDH907490DH907491
length1251,163
definitionDH907490|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P24, 5' end.DH907491|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,486,966 - 128,487,461)(147,968,979 - 147,970,109)
sequence
tagagatgactcagtgtgggggctgggaacagaactcaggtccccaggaa
gagtggtacatgttcctaaccactgagccacctctcctgcccttcaggac
aatttttgtttgtttgtttatgttt
gaattcccaggtctcaagacctcacacctgccagtcgcctccagtcttct
gcttccgcttctgcttccatactgtgatagactgttatcccggaaaccct
aacaaactgtctgctgtcggttgcttctggtcatggaagggaaaggtaac
taacactggcctaggtaatttccctagtcctctggatactgtgctatcat
agcacagggccctgatcagcaggtggtccctgtgtgggtggggcctgatt
ctcctggctgctggcagactatttcctcttcacttggccaacagcaggag
ttgggtaaggaaagggctgcaggagctgtggaaggttacataaatgtgct
ccgtccgctgtgtgcctcacaacacacgaggcacataacccaatagggtg
tccttgcaaaagagcagcggccatcaaaagaagcagctctcctctcaagg
gaataagagctatggtttactctgcagcaagtacagatgaccacagctcc
agagagcgcctccagatctccccagatacaaggttccaacatggaaacag
ttgcatggaggaacaaaacaagtaaaaacaagttttgttcaagacatttt
ttaaaaaaatacatggatggaaacattagagagggttacaaaggtggggg
agtgtctctgacacttgtttgtttgtttgtttgtttgtttgttttgttat
tggctttttcaagactggggtttctctgtgtagtcctggctctcatggaa
ctcgttctgtggatcaggctgatctctaactcagggatccctcatgtctc
ttgcttcctgagtgctgggggttgaagggtgtgcactactactcacttga
cttttgtttagcagtttgaaaggggtagggaagcttaatggccctgctaa
ataagtaaattccttaaagggctttaatctggttagtcacaggataccca
ggcccgggacacagagttggactaggaaagctatttagggagcctaaagc
ttagtccaagataaagttataattaaagcttctagaactaggcaacattt
ccaaactttcccgacaccaagtgtaaaccgttaatcatatatcagggcct
tgcaacacgacttcttctggtaattgatttcccaccctccagagggatat
gagaattttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_128486966_128487461
seq2: B6Ng01-096P24.b_118_176 (reverse)

seq1  AAACATAAACAAACAAACAAAAAAGTCTGGACAAAGCAAAGAGAAAATGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCACCAAGACACAAGATGGCCACTGAGGACCATTTCATCCCAAGCTTTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAAAAAAATAAAGCAGACTCCCACCCTTAGCCTCAGGAACTGTCACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAACAGAAACTCATGTTGTCAGTGTGTCATTTAATCAAGTTACCTGGAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTAATTTCCAACAAAATTCTAAAAATTCAAAACTAACTCATAAATATT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATTTTAAAATTCTTTGCATGACCATAACAGCTGCTGGTTGCCGGATATT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGACTGCACTGTGAATCCCAAGATTGTGTTATTTACTGAAAGAAAAAAAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGTTTCTACTTGTGGAGTAGTTATAGACACACTCGTAGAACACACCTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TAATCTTAAACAATGAAACTAAAATTAGTTTGTAGAAGGAAGCACCTCAT  450
       || | |||||||  |||| ||||     ||||           ||| | 
seq2  -AAACATAAACAAACAAACAAAAA-----TTGT-----------CCTGA-  32

seq1  GTTTGAAAGTGATGTCTAGGGCTGGAGAGATGGGGCTCAGTGGTTA  496
                       ||||| ||||||  | |||||||||||||
seq2  -----------------AGGGCAGGAGAG--GTGGCTCAGTGGTTA  59

seq1: chr5_147968979_147970109
seq2: B6Ng01-096P24.g_69_1231

seq1  GAATTCCCAGGTCTCAAGACCTCACACCTGCCAGTCGCCTCCAGTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGTCTCAAGACCTCACACCTGCCAGTCGCCTCCAGTCTTCT  50

seq1  GCTTCCGCTTCTGCTTCCATACTGTGATAGACTGTTATCCCGGAAACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGCTTCTGCTTCCATACTGTGATAGACTGTTATCCCGGAAACCCT  100

seq1  AACAAACTGTCTGCTGTCGGTTGCTTCTGGTCATGGAAGGGAAAGGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTGTCTGCTGTCGGTTGCTTCTGGTCATGGAAGGGAAAGGTAAC  150

seq1  TAACACTGGCCTAGGTAATTTCCCTAGTCCTCTGGATACTGTGCTATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGCCTAGGTAATTTCCCTAGTCCTCTGGATACTGTGCTATCAT  200

seq1  AGCACAGGGCCCTGATCAGCAGGTGGTCCCTGTGTGGGTGGGGCCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGCCCTGATCAGCAGGTGGTCCCTGTGTGGGTGGGGCCTGATT  250

seq1  CTCCTGGCTGCTGGCAGACTATTTCCTCTTCACTTGGCCAACAGCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTGCTGGCAGACTATTTCCTCTTCACTTGGCCAACAGCAGGAG  300

seq1  TTGGGTAAGGAAAGGGCTGCAGGAGCTGTGGAAGGTTACATAAATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAGGAAAGGGCTGCAGGAGCTGTGGAAGGTTACATAAATGTGCT  350

seq1  CCGTCCGCTGTGTGCCTCACAACACACGAGGCACATAACCCAATAGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCGCTGTGTGCCTCACAACACACGAGGCACATAACCCAATAGGGTG  400

seq1  TCCTTGCAAAAGAGCAGCGGCCATCAAAAGAAGCAGCTCTCCTCTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAAAGAGCAGCGGCCATCAAAAGAAGCAGCTCTCCTCTCAAGG  450

seq1  GAATAAGAGCTATGGTTTACTCTGCAGCAAGTACAGATGACCACAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAGCTATGGTTTACTCTGCAGCAAGTACAGATGACCACAGCTCC  500

seq1  AGAGAGCGCCTCCAGATCTCCCCAGATACAAGGTTCCAACATGGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCGCCTCCAGATCTCCCCAGATACAAGGTTCCAACATGGAAACAG  550

seq1  TTGCATGGAGGAACAAAACAAGTAAAAACAAGTTTTGTTCAAGACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGAGGAACAAAACAAGTAAAAACAAGTTTTGTTCAAGACATTTT  600

seq1  TTAAAAAAATACATGGATGGAAACATTAGAGAGGGTTACAAAGGTGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATACATGGATGGAAACATTAGAGAGGGTTACAAAGGTGGGGG  650

seq1  AGTGTCTCTGACACTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTGACACTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTAT  700

seq1  TGGCTTTTTCAAGACTGGGGTTTCTCTGTGTAGTCCTGGCTCTCATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTCAAGACTGGGGTTTCTCTGTGTAGTCCTGGCTCTCATGGAA  750

seq1  CTCGTTCTGTGGATCAGGCTGATCTCTAACTCAGGGAT-CCTCATGTCTC  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCGTTCTGTGGATCAGGCTGATCTCTAACTCAGGGATCCCTCATGTCTC  800

seq1  -TGCTTCCTGAGTGCT-GGGGTTGAA-GGTGTGCACTACTAC-CAC-TGA  844
       ||||||||||||||| ||||||||| ||||||||||||||| ||| |||
seq2  TTGCTTCCTGAGTGCTGGGGGTTGAAGGGTGTGCACTACTACTCACTTGA  850

seq1  CTTT--GTTAGCAG-TTGAA--GGGTAGG--AGC-TAATGG-CCTGCTAA  885
      ||||   ||||||| |||||  |||||||  ||| |||||| ||||||||
seq2  CTTTTGTTTAGCAGTTTGAAAGGGGTAGGGAAGCTTAATGGCCCTGCTAA  900

seq1  ATTAGTAAATTCCT--AAAGGCTTTAATCT-GTTAGTCACAGGATA-CCA  931
      || |||||||||||  || ||||||||||| ||||||||||||||| |||
seq2  ATAAGTAAATTCCTTAAAGGGCTTTAATCTGGTTAGTCACAGGATACCCA  950

seq1  GGCC--GGACACAGAAGTGGACAAGG-AAGCTATTTAGGGAG-CTAAAGC  977
      ||||  |||||||||  ||||| ||| ||||||||||||||| |||||||
seq2  GGCCCGGGACACAGAGTTGGACTAGGAAAGCTATTTAGGGAGCCTAAAGC  1000

seq1  -TAGTCCAAGATAAAG-TATAATT-AAGC-TCTAG-ACTA-GCAACA-TT  1020
       ||||||||||||||| ||||||| |||| ||||| |||| |||||| ||
seq2  TTAGTCCAAGATAAAGTTATAATTAAAGCTTCTAGAACTAGGCAACATTT  1050

seq1  CCAACC--TCCCGACACC-AGTGTAA--CTGTAATCAATTAATCA-GGCC  1064
      |||| |  |||||||||| |||||||  |  ||||| ||  |||| ||||
seq2  CCAAACTTTCCCGACACCAAGTGTAAACCGTTAATC-ATATATCAGGGCC  1099

seq1  TTGCGAACACAGCTTCCTTCTGGGAATTTTCATTCCCACACCTCCAAGAG  1114
      |||| |||||  ||| ||||||| || ||   ||||||| ||||||   |
seq2  TTGC-AACACGACTT-CTTCTGGTAA-TTGATTTCCCAC-CCTCCAGAGG  1145

seq1  GATAAGAGAA-TTTATTC  1131
      |||| ||||| |||||||
seq2  GATATGAGAATTTTATTC  1163