BAC Information

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BAC

Clone NameB6Ng01-098B02
Chromosome2 (Build37)
Map Location 159,267,409 - 159,388,975
singlet/doubletdoublet
Overlap genenone
Upstream geneB230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098B02.bB6Ng01-098B02.g
ACCDH908261DH908262
length1,2181,052
definitionDH908261|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B02, 5' end.DH908262|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,387,755 - 159,388,975)(159,267,409 - 159,268,474)
sequence
gaattcttgccctggcttctctttatgatgtcgtgtaaactgaaagctga
agtaaacccctctcctcctgtttgtattatatcaacagaaagcaaactgg
gaaatgcaaatatcataaatccctgggatttcccaggtggtagaagcact
ttttcttctgatgggatgactcctcatggtcccctgatgaggaaagccac
tggacgaacatgccacgatctcatctggagcttgcagctttccactgtct
cacaggaaagagtaggaaggcttgatacagatgccataggcagtcacagc
caatgagatgaagtagccatggaaagtttcaaactatgtgtggttctggg
tcaggttatctcctgacagaaataaaagttgaaaataacagactacagtt
tgtttgtaatgagtgcaattagcctctagaatgttttaatggaggctttc
aaaaatgttcatgaagaacatcttcactgacttgaaggaaaagctaaggg
atgacttatggggtgtcttctagatctaagatgctaagaacaactcattc
agcagccatgtgccttaacgttggacacactgttctaaagggaaaaggat
tttccttaaagactcttggtaagtttagacactccatctgtctccttctc
caagggtgacaaggttttgagctattgcttcatgaaggggctggaaacat
cctgatacactgtttacttcctaactgctttgctgtgagctgctgtttta
aattctaaacagcttaataaaactttccaacaatttcagcatttttctaa
atttgagaagccatctttatggcttttggaagaaagtccaggagtattgt
cactatgcagtcgctggcaaaaaaaaataaataaatgtagttttagagat
gaaataacaagtgggagtgatgtcgtttcaaatccctcatcactcagtga
gcatgtgactcacaccatgagctcaccagcggatgcaggaaagtgatgag
ctatgcacacagttcttcgaatgcctacctcagccactctgtctttgggt
catggagaaactggatgggaatcagctgagcttgatcctagcatttggga
ttttaggacccttgtgatctttcaaggagaaacagagggaggagaaagag
agggaaagccttaaaagaaagccttccctctccaatcagttctcttaatg
gcagttgctgaacagacc
gaattcataaaagtcaaggagatggcttagaaaatttgatttataactac
ttagtcaggagtatagattactatctattactatgttttaatttcaaagg
acacctttttttatttttctgagagagggtctctttgtgtggccttggct
gtctttagctttgtctgtagaccaggttggactcgaactcacagaaatcc
atcagcctctgcctcttgatcatgccaccaccaccagtttgagctgacat
cttaaggagagaaatttgggaagtcttgtgagataagagccttaatttta
ggaagggaagtagcttacattatggccaggtagacaatgttggaatctaa
atgactacaggacaccccctttgatatctacaggggaattcttggtgtgt
gggaagtagctaccatacacattaaggtacgtagtacctaatctacactg
attaggaaattgatttattttttctatttctagaatgttttctgttcttc
cttctcaaataaagaaggaagacagatagaacaatatttagcttatttat
tttgataactgtgacctcctgcttcaattcttctgagattctggcctgtg
ccagcagaagtgtttttttttttttttttttcttcccagtcttagaaaac
agaaagttcttatgtagggaaatgtggtttatgaccatcctgctatcctg
acttcagttggtttgctcttcttctgtgttggattcctaacttcccatat
atctgcaagatgtttggagtcaccttctcaagggtagtagtcagagtcct
gagcccttacatctactgaggaatgaaaagcaggcctgtgctcctgtggc
tctaaccaacaggctacacatcctctgttgagagtgtgtagaagaatgcc
tgtgtcctgtggcagcatggcacatctccatgctggtgtcctcacaaatg
acagtttggatgcctgacactgctgaaaatgactgctcattccaactggt
ctgaataaaaaagggatggatccactggataatcgatatggtgaccttat
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159387755_159388975
seq2: B6Ng01-098B02.b_49_1266 (reverse)

seq1  GGTCTGTTCAGCAAACTGCCTATTTAGAGAAACTGAAATGGGGAGAGGAA  50
      |||||||||||| ||||||| ||| |||| ||||| | ||| ||| ||||
seq2  GGTCTGTTCAGC-AACTGCC-ATTAAGAG-AACTG-ATTGGAGAG-GGAA  45

seq1  AGCTTTCTTCT-AGGCTTCTCCTCT-TTTCTCCTCCTCCTG-TTCTCC-T  96
       |||||||| | ||||||  ||||| ||||||||||  ||| |||||| |
seq2  GGCTTTCTTTTAAGGCTTTCCCTCTCTTTCTCCTCCCTCTGTTTCTCCTT  95

seq1  GAAAGATCACACGGGTCCTAAAATCCCAAATGCTAGGATTCAGGCTTCAG  146
      ||||||||||| |||||||||||||||||||||||||| ||| || ||||
seq2  GAAAGATCACAAGGGTCCTAAAATCCCAAATGCTAGGA-TCAAGC-TCAG  143

seq1  CTGATT-CCAT-CAGTTTCTCCATTGACCAAAGACAGAGTGGCTGAGGTA  194
      |||||| |||| ||||||||||||   |||||||||||||||||||||||
seq2  CTGATTCCCATCCAGTTTCTCCATGACCCAAAGACAGAGTGGCTGAGGTA  193

seq1  GGCATTTCGAAGAACTGTGTGCATAGCTCATCACTCTCCCTGCATCCGCT  244
      |||| |||||||||||||||||||||||||||||| | ||||||||||||
seq2  GGCA-TTCGAAGAACTGTGTGCATAGCTCATCACT-TTCCTGCATCCGCT  241

seq1  GGTGAGCTCATGGTGTGAGTCACATGCTCACTGAGTGATGAGGGATTTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTCATGGTGTGAGTCACATGCTCACTGAGTGATGAGGGATTTGA  291

seq1  AACGACATCACT-CCACTTGTTATTTCATCTCTTAAAACTACATTTATTT  343
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AACGACATCACTCCCACTTGTTATTTCATCTC-TAAAACTACATTTATTT  340

seq1  ATTTTTTTTTGCCAGCGACTGCATAGTGACAATACTCCTGGACTTTCTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTGCCAGCGACTGCATAGTGACAATACTCCTGGACTTTCTTC  390

seq1  CAAAAGCCATAAAGATGGCTTCTCAAATTTAGAAAAATGCTGAAATTGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCATAAAGATGGCTTCTCAAATTTAGAAAAATGCTGAAATTGTT  440

seq1  GGAAAGTTTTATTAAGCTGTTTAGAATTTAAAACAGCAGCTCACAGCAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTATTAAGCTGTTTAGAATTTAAAACAGCAGCTCACAGCAAA  490

seq1  GCAGTTAGGAAGTAAACAGTGTATCAGGATGTTTCCAGCCCCTTCATGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGGAAGTAAACAGTGTATCAGGATGTTTCCAGCCCCTTCATGAA  540

seq1  GCAATAGCTCAAAACCTTGTCACCCTTGGAGAAGGAGACAGATGGAGTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCTCAAAACCTTGTCACCCTTGGAGAAGGAGACAGATGGAGTGT  590

seq1  CTAAACTTACCAAGAGTCTTTAAGGAAAATCCTTTTCCCTTTAGAACAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTACCAAGAGTCTTTAAGGAAAATCCTTTTCCCTTTAGAACAGT  640

seq1  GTGTCCAACGTTAAGGCACATGGCTGCTGAATGAGTTGTTCTTAGCATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAACGTTAAGGCACATGGCTGCTGAATGAGTTGTTCTTAGCATCT  690

seq1  TAGATCTAGAAGACACCCCATAAGTCATCCCTTAGCTTTTCCTTCAAGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAGAAGACACCCCATAAGTCATCCCTTAGCTTTTCCTTCAAGTC  740

seq1  AGTGAAGATGTTCTTCATGAACATTTTTGAAAGCCTCCATTAAAACATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATGTTCTTCATGAACATTTTTGAAAGCCTCCATTAAAACATTC  790

seq1  TAGAGGCTAATTGCACTCATTACAAACAAACTGTAGTCTGTTATTTTCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTAATTGCACTCATTACAAACAAACTGTAGTCTGTTATTTTCAA  840

seq1  CTTTTATTTCTGTCAGGAGATAACCTGACCCAGAACCACACATAGTTTGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTCTGTCAGGAGATAACCTGACCCAGAACCACACATAGTTTGA  890

seq1  AACTTTCCATGGCTACTTCATCTCATTGGCTGTGACTGCCTATGGCATCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCATGGCTACTTCATCTCATTGGCTGTGACTGCCTATGGCATCT  940

seq1  GTATCAAGCCTTCCTACTCTTTCCTGTGAGACAGTGGAAAGCTGCAAGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGCCTTCCTACTCTTTCCTGTGAGACAGTGGAAAGCTGCAAGCT  990

seq1  CCAGATGAGATCGTGGCATGTTCGTCCAGTGGCTTTCCTCATCAGGGGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAGATCGTGGCATGTTCGTCCAGTGGCTTTCCTCATCAGGGGAC  1040

seq1  CATGAGGAGTCATCCCATCAGAAGAAAAAGTGCTTCTACCACCTGGGAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGAGTCATCCCATCAGAAGAAAAAGTGCTTCTACCACCTGGGAAA  1090

seq1  TCCCAGGGATTTATGATATTTGCATTTCCCAGTTTGCTTTCTGTTGATAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGATTTATGATATTTGCATTTCCCAGTTTGCTTTCTGTTGATAT  1140

seq1  AATACAAACAGGAGGAGAGGGGTTTACTTCAGCTTTCAGTTTACACGACA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAACAGGAGGAGAGGGGTTTACTTCAGCTTTCAGTTTACACGACA  1190

seq1  TCATAAAGAGAAGCCAGGGCAAGAATTC  1221
      ||||||||||||||||||||||||||||
seq2  TCATAAAGAGAAGCCAGGGCAAGAATTC  1218

seq1: chr2_159267409_159268474
seq2: B6Ng01-098B02.g_68_1119

seq1  GAATTCATAAAAGTCAAGGAGATGGCTTAGAAAATTTGATTTATAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAAGTCAAGGAGATGGCTTAGAAAATTTGATTTATAACTAC  50

seq1  TTAGTCAGGAGTATAGATTACTATCTATTACTATGTTTTAATTTCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGGAGTATAGATTACTATCTATTACTATGTTTTAATTTCAAAGG  100

seq1  ACACCTTTTTTTATTTTTCTGAGAGAGGGTCTCTTTGTGTGGCCTTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTTTTTATTTTTCTGAGAGAGGGTCTCTTTGTGTGGCCTTGGCT  150

seq1  GTCTTTAGCTTTGTCTGTAGACCAGGTTGGACTCGAACTCACAGAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGCTTTGTCTGTAGACCAGGTTGGACTCGAACTCACAGAAATCC  200

seq1  ATCAGCCTCTGCCTCTTGATCATGCCACCACCACCAGTTTGAGCTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTCTGCCTCTTGATCATGCCACCACCACCAGTTTGAGCTGACAT  250

seq1  CTTAAGGAGAGAAATTTGGGAAGTCTTGTGAGATAAGAGCCTTAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGAGAGAAATTTGGGAAGTCTTGTGAGATAAGAGCCTTAATTTTA  300

seq1  GGAAGGGAAGTAGCTTACATTATGGCCAGGTAGACAATGTTGGAATCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAAGTAGCTTACATTATGGCCAGGTAGACAATGTTGGAATCTAA  350

seq1  ATGACTACAGGACACCCCCTTTGATATCTACAGGGGAATTCTTGGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACAGGACACCCCCTTTGATATCTACAGGGGAATTCTTGGTGTGT  400

seq1  GGGAAGTAGCTACCATACACATTAAGGTACGTAGTACCTAATCTACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAGCTACCATACACATTAAGGTACGTAGTACCTAATCTACACTG  450

seq1  ATTAGGAAATTGATTTATTTTTTCTATTTCTAGAATGTTTTCTGTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAATTGATTTATTTTTTCTATTTCTAGAATGTTTTCTGTTCTTC  500

seq1  CTTCTCAAATAAAGAAGGAAGACAGATAGAACAATATTTAGCTTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAATAAAGAAGGAAGACAGATAGAACAATATTTAGCTTATTTAT  550

seq1  TTTGATAACTGTGACCTCCTGCTTCAATTCTTCTGAGATTCTGGCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACTGTGACCTCCTGCTTCAATTCTTCTGAGATTCTGGCCTGTG  600

seq1  CCAGCAGAAGTGTTTTTTTTTTTTTTTTTTTCTTCCCAGTCTTAGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAGTGTTTTTTTTTTTTTTTTTTTCTTCCCAGTCTTAGAAAAC  650

seq1  AGAAAGTTCTTATGTAGGGAAATGTGGTTTATGACCATCCTGCTATCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCTTATGTAGGGAAATGTGGTTTATGACCATCCTGCTATCCTG  700

seq1  ACTTCAGTTGGTTTGCTCTTCTTCTGTGTTGGATTCCTAACTTCCCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTGGTTTGCTCTTCTTCTGTGTTGGATTCCTAACTTCCCATAT  750

seq1  ATCTGCAAGATGTTTGGAGTCACCTTCTCAAGGGTAGTAGTCAGAGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGATGTTTGGAGTCACCTTCTCAAGGGTAGTAGTCAGAGTCCT  800

seq1  GAGCCCTTACATCTACTGAGGAATGAAAAGCAGGCCTGTGCTCCTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTACATCTACTGAGGAATGAAAAGCAGGCCTGTGCTCCTGTGGC  850

seq1  TCTAACCAACAGGCTACACATCCTCTGTTGAGAGTGTGTAGAAGAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCAACAGGCTACACATCCTCTGTTGAGAGTGTGTAGAAGAATGCC  900

seq1  TGTGTCCTGTGGCAGCATGGCACATCTCCATGCTGGTGTCCTCCACAAAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTCCTGTGGCAGCATGGCACATCTCCATGCTGGTGTCCT-CACAAAT  949

seq1  GACAGTTTGGGATGCCCTGACACTGCTTGGAAAATGACTGCTCAATTCCA  1000
      |||||||| ||||| ||||||||||||  |||||||||||||| ||||| 
seq2  GACAGTTT-GGATG-CCTGACACTGCT--GAAAATGACTGCTC-ATTCC-  993

seq1  AACTGGTCTGAAATAAAAAAAAGGGAATGGAT-CACTGGGATAAATCAGA  1049
      |||||||||| |||||||||   || |||||| |||| |||| |||| ||
seq2  AACTGGTCTG-AATAAAAAA---GGGATGGATCCACT-GGAT-AATC-GA  1036

seq1  TATGGGTGAACTTATCA  1066
      ||| ||||| |||||||
seq2  TAT-GGTGACCTTATCA  1052