BAC Information

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BAC

Clone NameB6Ng01-100H06
Chromosome2 (Build37)
Map Location 31,761,624 - 31,940,422
singlet/doubletdoublet
Overlap geneLamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058
Upstream genePpia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1
Downstream genePpapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H06.bB6Ng01-100H06.g
ACCDH909948DH909949
length126489
definitionDH909948|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H06, 5' end.DH909949|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,940,297 - 31,940,422)(31,761,624 - 31,762,112)
sequence
gaattcctagggttagaaaaaaaggaaatgtcgtttatgcaagaagaggc
tcaactcccccagcagctgcagagaggtgggaaagaagagagagagagag
agagagagagagagaggggggggaga
gccctcacctttacattctcccctgatgtaaccccaccctgtagctactg
agcccctgcctcttgagagataaagctgcagacacaggaagaactaacca
accagcccactggggtggagggtgggggagacctgggaggcccacttgct
gtgagaaggacagagccccaggttgaaacctgagaattcatgagcaaggg
acatgagacactccaagtggggaggggacacagccaaggctgaggtagga
gtcaggtgagactcaggtctggaagaagaagagcctagtgctgaggggcc
tttggggtatctggggaaggctgtgaccagggaggccaaggtaggtgtct
gtgtgagaggcggggtgaggctttttttggagcacggctggccctgaaga
gggaggacggagatgagcagatttcgaagcccaagtttatggtgacagga
gactgaggaggaggaagagatgggggctgattctcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31940297_31940422
seq2: B6Ng01-100H06.b_42_167 (reverse)

seq1  TCTCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTCCCAC  50

seq1  CTCTCTGCAGCTGCTGGGGGAGTTGAGCCTCTTCTTGCATAAACGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAGCTGCTGGGGGAGTTGAGCCTCTTCTTGCATAAACGACATT  100

seq1  TCCTTTTTTTCTAACCCTAGGAATTC  126
      ||||||||||||||||||||||||||
seq2  TCCTTTTTTTCTAACCCTAGGAATTC  126

seq1: chr2_31761624_31762112
seq2: B6Ng01-100H06.g_82_570

seq1  GCCCTCACCTTTACATTCTCCCCTGATGTAACCCCACCCTGTAGCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACCTTTACATTCTCCCCTGATGTAACCCCACCCTGTAGCTACTG  50

seq1  AGCCCCTGCCTCTTGAGAGATAAAGCTGCAGACACAGGAAGAACTAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGCCTCTTGAGAGATAAAGCTGCAGACACAGGAAGAACTAACCA  100

seq1  ACCAGCCCACTGGGGTGGAGGGTGGGGGAGACCTGGGAGGCCCACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCACTGGGGTGGAGGGTGGGGGAGACCTGGGAGGCCCACTTGCT  150

seq1  GTGAGAAGGACAGAGCCCCAGGTTGAAACCTGAGAATTCATGAGCAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGGACAGAGCCCCAGGTTGAAACCTGAGAATTCATGAGCAAGGG  200

seq1  ACATGAGACACTCCAAGTGGGGAGGGGACACAGCCAAGGCTGAGGTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGACACTCCAAGTGGGGAGGGGACACAGCCAAGGCTGAGGTAGGA  250

seq1  GTCAGGTGAGACTCAGGTCTGGAAGAAGAAGAGCCTAGTGCTGAGGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGAGACTCAGGTCTGGAAGAAGAAGAGCCTAGTGCTGAGGGGCC  300

seq1  TTTGGGGTATCTGGGGAAGGCTGTGACCAGGGAGGCCAAGGTAGGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTATCTGGGGAAGGCTGTGACCAGGGAGGCCAAGGTAGGTGTCT  350

seq1  GTGTGAGAGGCGGGGTGAGGCTTTGGCAGGAGCACGGCTGGCCCTGAAGA  400
      ||||||||||||||||||||||||    ||||||||||||||||||||||
seq2  GTGTGAGAGGCGGGGTGAGGCTTTTTTTGGAGCACGGCTGGCCCTGAAGA  400

seq1  GGGAGGACGGAGATGAGCAGATTTCGAAGCCCAAGTTTATGGTGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACGGAGATGAGCAGATTTCGAAGCCCAAGTTTATGGTGACAGGA  450

seq1  GACTGAGGAGGAGGAAGAGATGGGGGCTGATTCTCATGG  489
      |||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGAGGAGGAAGAGATGGGGGCTGATTCTCATGG  489