BAC Information

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BAC

Clone NameB6Ng01-100N03
Chromosome2 (Build37)
Map Location 35,804,397 - 35,923,060
singlet/doubletdoublet
Overlap geneNdufa8, 1700010A17Rik
Upstream geneTraf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
Downstream geneLhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N03.bB6Ng01-100N03.g
ACCDH910201DH910202
length1,164509
definitionDH910201|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N03, 5' end.DH910202|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,804,397 - 35,805,563)(35,922,546 - 35,923,060)
sequence
gaattccatgttcccatatctggctacaatccttattctaagaatctcct
gcctcgatgttgtgtacattgctccccagttattccctcattcaataaag
aagctgatcagccaatgactgagcaggggaaagaatagagctggactttc
ccccagccaggggaggggacaggagagagaggaagaggagattcggccac
aaggagggcaagaggagacatcatgggaaaacacacttgaagcccagaga
gccataccaatactaaaacgcaactatcactgggatgttggctgggaggt
acacaaattagcttagaggaatagaatagatcaatgactgcccaggtatt
gtgcagtaaagcttgattatacaaatctaatagtctctgtcttattgact
tgggaactagccaggaatagaggaatactgccacttttaaaactagtttt
acacagaagtgggaaatacgctttgatatgggcaagcacatttgcagtac
atagacaggagaaaccatccaaaccagtgctttgaacagatggcccaggg
gctggagagattgctcaatggttacaggcatgtgctccttttgtagaaga
cttgggtttgacttccagcacccataaggttgctcacagccccttaactc
tggttccaggggatcaaatcccctcttctggcctccacaggcactgcaca
cacatggtgaacacacacacacatacagacaacaccacatataaattaaa
aataaataaatcttttcaattgaatatactttatagtgagtgtaacaatt
actatttatgctaattttctagcacatctgtctccattctacacaagaat
tataatcccaggggtagcaaacccagaactggaaaggcatcaacttttag
atctgatataaatgatctgaaatccaaagactagtacctagtcacctttg
gcttagttgaaccttgccttccctacatggttggttgtgatctaacatgc
atgttgttcccctattgatccaaacccagcacatcttcaccacttggtca
gaaaccttgtcaaaatcggaggtaattaaatttattaagatccttctcat
ctgctctctgggaaacaagcctgtctacaactgaaacgaaggcccaaagg
taaaacccccagac
tgtctgggacccgcaggttcaagcataaaatgggcctctctgcaaataat
cactggcgtgtgatatttttaagaaagcaaagccattgtttctgattgaa
ggaaagtcagtgctgttttgaagagaagcacgattaggcagtggcgctct
ctttcaccactgggaattagacgccgtttgagagatttgtgagctccagg
acatttgccagatgtgcttgattctacatttcagacaacaaaggggataa
tgttggcgggaatcttgacggcactgctgatgatcgggatattctttgag
gatggtactgagacctttcaggggaggatttcagcttttacataaactaa
tttgggatgctcactctctgtcttgcacaaagcaaatttagttcattgtt
agctgtatctgctaaaatggttacaagggtttttttccttgaatattaat
aatgcgcctttcattggagatgctcgaatggggtgtcattaattgggggg
ggggtagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_35804397_35805563
seq2: B6Ng01-100N03.b_48_1211

seq1  GAATTCCATGTTCCCATATCTGGCTACAATCCTTATTCTAAGAATCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTCCCATATCTGGCTACAATCCTTATTCTAAGAATCTCCT  50

seq1  GCCTCGATGTTGTGTACATTGCTCCCCAGTTATTCCCTCATTCAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGATGTTGTGTACATTGCTCCCCAGTTATTCCCTCATTCAATAAAG  100

seq1  AAGCTGATCAGCCAATGACTGAGCAGGGGAAAGAATAGAGCTGGACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATCAGCCAATGACTGAGCAGGGGAAAGAATAGAGCTGGACTTTC  150

seq1  CCCCAGCCAGGGGAGGGGACAGGAGAGAGAGGAAGAGGAGATTCGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCAGGGGAGGGGACAGGAGAGAGAGGAAGAGGAGATTCGGCCAC  200

seq1  AAGGAGGGCAAGAGGAGACATCATGGGAAAACACACTTGAAGCCCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGCAAGAGGAGACATCATGGGAAAACACACTTGAAGCCCAGAGA  250

seq1  GCCATACCAATACTAAAACGCAACTATCACTGGGATGTTGGCTGGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACCAATACTAAAACGCAACTATCACTGGGATGTTGGCTGGGAGGT  300

seq1  ACACAAATTAGCTTAGAGGAATAGAATAGATCAATGACTGCCCAGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTAGCTTAGAGGAATAGAATAGATCAATGACTGCCCAGGTATT  350

seq1  GTGCAGTAAAGCTTGATTATACAAATCTAATAGTCTCTGTCTTATTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAAAGCTTGATTATACAAATCTAATAGTCTCTGTCTTATTGACT  400

seq1  TGGGAACTAGCCAGGAATAGAGGAATACTGCCACTTTTAAAACTAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTAGCCAGGAATAGAGGAATACTGCCACTTTTAAAACTAGTTTT  450

seq1  ACACAGAAGTGGGAAATACGCTTTGATATGGGCAAGCACATTTGCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGTGGGAAATACGCTTTGATATGGGCAAGCACATTTGCAGTAC  500

seq1  ATAGACAGGAGAAACCATCCAAACCAGTGCTTTGAACAGATGGCCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGAGAAACCATCCAAACCAGTGCTTTGAACAGATGGCCCAGGG  550

seq1  GCTGGAGAGATTGCTCAATGGTTACAGGCATGTGCTCCTTTTGTAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATTGCTCAATGGTTACAGGCATGTGCTCCTTTTGTAGAAGA  600

seq1  CTTGGGTTTGACTTCCAGCACCCATAAGGTTGCTCACAGCCCCTTAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTTGACTTCCAGCACCCATAAGGTTGCTCACAGCCCCTTAACTC  650

seq1  TGGTTCCAGGGGATCAAATCCCCTCTTCTGGCCTCCACAGGCACTGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCAGGGGATCAAATCCCCTCTTCTGGCCTCCACAGGCACTGCACA  700

seq1  CACATGGTGAACACACACACACATACAGACAACACCACATATAAATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGAACACACACACACATACAGACAACACCACATATAAATTAAA  750

seq1  AATAAATAAATCTTTTCAATTGAATATACTTTATAGTGAGTGTAACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATCTTTTCAATTGAATATACTTTATAGTGAGTGTAACAATT  800

seq1  ACTATTTATGCTAATTTTCTAGCACATCTGTCTCCATTCTACACAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATGCTAATTTTCTAGCACATCTGTCTCCATTCTACACAAGAAT  850

seq1  TATAATCCCAGGGGTAGCAAACCCAGAACTGG-AAGGCATCAACTTTTAG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATAATCCCAGGGGTAGCAAACCCAGAACTGGAAAGGCATCAACTTTTAG  900

seq1  ATCTGATATAAATGATCTGAAATCCAAAGACTAGTACCTAGTCACCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATAAATGATCTGAAATCCAAAGACTAGTACCTAGTCACCTTTG  950

seq1  GCTTAGTTGAACCTTGCCTTCCCTACATGGTTGGTTGTGATCTAACATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTGAACCTTGCCTTCCCTACATGGTTGGTTGTGATCTAACATGC  1000

seq1  ATGTTGTTCCCCTTATTGATCCAAACCCAGCACATCTTCAACCAC-TGGT  1048
      |||||||||||| |||||||||||||||||||||||||| ||||| ||||
seq2  ATGTTGTTCCCC-TATTGATCCAAACCCAGCACATCTTC-ACCACTTGGT  1048

seq1  CAGAAACCTTGTTCAAAATCGGA-GTAATATAAATAATTAAGATCCCTTC  1097
      ||||||||||| ||||||||||| |||||  || | |||||||| |||||
seq2  CAGAAACCTTG-TCAAAATCGGAGGTAATTAAATTTATTAAGAT-CCTTC  1096

seq1  TCATCTGCTCTCT-GGAAACAAGCCCGTCTACAACCTGAGACAGAAAGCC  1146
      ||||||||||||| ||||||||||| |||||||| |||| || ||| |||
seq2  TCATCTGCTCTCTGGGAAACAAGCCTGTCTACAA-CTGAAAC-GAAGGCC  1144

seq1  CAAAGGATAAACCCCACAGAC  1167
      |||||| |||| ||| |||||
seq2  CAAAGG-TAAAACCCCCAGAC  1164

seq1: chr2_35922546_35923060
seq2: B6Ng01-100N03.g_68_582 (reverse)

seq1  TACTACCCCCCCCCCAATTAATGACACCCCATTCGAGCATCTCCAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCCCCCCCCAATTAATGACACCCCATTCGAGCATCTCCAATGAA  50

seq1  AGGCGCATTATTAATATTCAAGGAAAAAAACCCTTGTAACCATTTTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCATTATTAATATTCAAGGAAAAAAACCCTTGTAACCATTTTAGCA  100

seq1  GATACAGCTAACAATGAACTAAATTTGCTTTGTGCAAGACAGAGAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCTAACAATGAACTAAATTTGCTTTGTGCAAGACAGAGAGTGAG  150

seq1  CATCCCAAATTAGTTTATGTAAAAGCTGAAATCCTCCCCTGAAAGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAATTAGTTTATGTAAAAGCTGAAATCCTCCCCTGAAAGGTCTC  200

seq1  AGTACCATCCTCAAAGAATATCCCGATCATCAGCAGTGCCGTCAAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATCCTCAAAGAATATCCCGATCATCAGCAGTGCCGTCAAGATTC  250

seq1  CCGCCAACATTATCCCCTTTGTTGTCTGAAATGTAGAATCAAGCACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAACATTATCCCCTTTGTTGTCTGAAATGTAGAATCAAGCACATCT  300

seq1  GGCAAATGTCCTGGAGCTCACAAATCTCTCAAACGGCGTCTAATTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTCCTGGAGCTCACAAATCTCTCAAACGGCGTCTAATTCCCAG  350

seq1  TGGTGAAAGAGAGCGCCACTGCCTAATCGTGCTTCTCTTCAAAACAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAGAGAGCGCCACTGCCTAATCGTGCTTCTCTTCAAAACAGCAC  400

seq1  TGACTTTCCTTCAATCAGAAACAATGGCTTTGCTTTCTTAAAAATATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCTTCAATCAGAAACAATGGCTTTGCTTTCTTAAAAATATCAC  450

seq1  ACGCCAGTGATTATTTGCAGAGAGGCCCATTTTATGCTTGAACCTGCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGTGATTATTTGCAGAGAGGCCCATTTTATGCTTGAACCTGCGGG  500

seq1  TCCCAGACAGAATTC  515
      |||||||||||||||
seq2  TCCCAGACAGAATTC  515