BAC Information

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BAC

Clone NameB6Ng01-101N02
Chromosome2 (Build37)
Map Location 42,554,240 - 42,669,203
singlet/doubletdoublet
Overlap genenone
Upstream geneLrp1b, LOC625094
Downstream geneLOC100041228, LOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N02.bB6Ng01-101N02.g
ACCDH910887DH910888
length1,0461,070
definitionDH910887|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N02, 5' end.DH910888|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,554,240 - 42,555,435)(42,668,124 - 42,669,203)
sequence
gaattctctagtggctaccccagttccccctaccccactgctacacacct
cctattaaattcctgaccctctgtagttcccccctccctgtctcctcctg
tatttgaatcagctccccttttcccctcccctctcctctctccctcccac
atccttctctctctccacttccagaaatgtttttctttccccttctgagt
aagactgtagcaaccacactttggtgtgatctttctttttgggtttcata
tggtctgtgagttttattgtgagtatttctagcttctttttggcaaatat
ccacttatcagtgagtacataccacgtgtgctcttctgtgacagggttac
ctcactcagcatgatattttcgagttccacccatttgcctgtgaatttca
tgaagacagcagatgttggtgtggatgtggacaaagaggaacactcctcc
attgcaggtgggaatgcaagctgataccaccactctggaaattaaaaacc
atttaggttttaatacctaagagtgtatatgagttacatgtgttatcata
agaattcaaaactgataaacagaagaaattaaaagaaatctttattggca
gtttcaattttgtaatgaatttgtttttgaaatacttttttgaatgaaaa
tctttatcttgggaaatatatactttaaatatttccaaaagtcacaatca
cagtgttcacctgagccatgttgatgaagcctaaagacaatgtccaatga
gaagtcagagagctctagcagttttatatatcaaggtaggaaataaaagc
gtaaaaatcagttacaagttggatacaatcttgatcaagcatcatacttt
gggaaagtcattgtctaagatgtattgcaatggttccttcttagtatgtg
gccagaaatacacattaccccaaataaaaattaatttactgatcatgaac
tattgaatcttggaatgtaataagtgcatgatcagatattggtcaaagct
gatgggagcagatgatacaactggaacagattggaaaagaagagct
gaattcctaatcccttaggggttgaattgttcctcctattctccaataaa
agtcagtacgctgtttggcttgggtgtaattatctctctgagtcagctgc
tggatgtcctaccagagggcagccatactatattcctgtctgtaagcata
acaaaggatcattaatggtttaaagattggtgggtgcccacgaaatgggt
ttaaaattgggctggttattgattttcaactccctcagtctctgttccat
tgcctatgtctgcacttcttacagacaaggtaaattttgggtagaaagtt
ttctgggtgggttggtgtccctgttctcatggctatctggccatccctcc
tactttatttcacatctgatcctgaaacacccattctgcactctggaaat
ttattgcttactagacagaatatccctcaacagtttgaactcaccagcag
atcttatgtgggttacatcctggaccatgttatttttaaattctattagg
tagagttctctagaggaacagaacaaattgactgcagatgtatttaatat
aaaaatggtttattacattggcttacccacaaggatgggtatatctgagt
atcagttactgtaggctgaaagcctcagagacaaatacactcagatggat
aagagacaaggctttcccacagaccacttaaacccattgatgtcatttgg
agagggtgggtttatgcccttagtttaactccctttgacaatgctctcac
agacattctcagagatgtgctccctgtgtgcttctaagtcccatcaattc
taaaatcaaaaccagcctttagaatgttgctactgagaggaaacatataa
cagcacttgtaacctcagtaagttttggacattaattcatactattgaag
tgagattaaatttcaaaccacacactatgttttctttaatataattaaca
caaacctgggaaaagagatggaatatttggcagttttatcactcctttta
gcctaaaattttctttataaggtttgaagtacataaattttaattccaat
cgagcacattttgtgctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_42554240_42555435
seq2: B6Ng01-101N02.b_47_1092

seq1  GAATTCTCTAGTGGCTACCCCAGTTCCCCCTACCCCACTGCTACACACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTGGCTACCCCAGTTCCCCCTACCCCACTGCTACACACCT  50

seq1  CCTATTAAATTCCTGACCCTCTGTAGTTCCCCCCTCCCTGTCTCCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAATTCCTGACCCTCTGTAGTTCCCCCCTCCCTGTCTCCTCCTG  100

seq1  TATTTGAATCAGCTCCCCTTTTCCCCTCCCCTCTCCTCTCTCCCTCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATCAGCTCCCCTTTTCCCCTCCCCTCTCCTCTCTCCCTCCCAC  150

seq1  ATCCTTCTCTCTCTCCACTTCCAGAAATGTTTTTCTTTCCCCTTCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCTCTCTCCACTTCCAGAAATGTTTTTCTTTCCCCTTCTGAGT  200

seq1  AAGACTGTAGCAACCACACTTTGGTGTGATCTTTCTTTTTGGGTTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTAGCAACCACACTTTGGTGTGATCTTTCTTTTTGGGTTTCATA  250

seq1  TGGTCTGTGAGTTTTATTGTGAGTATTTCTAGCTTCTTTTTGGCAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGAGTTTTATTGTGAGTATTTCTAGCTTCTTTTTGGCAAATAT  300

seq1  CCACTTATCAGTGAGTACATACCACGTGTGCTCTTCTGTGACAGGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATCAGTGAGTACATACCACGTGTGCTCTTCTGTGACAGGGTTAC  350

seq1  CTCACTCAGCATGATATTTTCGAGTTCCACCCATTTGCCTGTGAATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGCATGATATTTTCGAGTTCCACCCATTTGCCTGTGAATTTCA  400

seq1  TGAAGACAGCAGATGTTGGTGTGGATGTGGACAAAGAGGAACACTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCAGATGTTGGTGTGGATGTGGACAAAGAGGAACACTCCTCC  450

seq1  ATTGCAGGTGGGAATGCAAGCTGATACCACCACTCTGGAAATTAAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGTGGGAATGCAAGCTGATACCACCACTCTGGAAATTAAAAACC  500

seq1  ATTTAGGTTTTAATACCTAAGAGTGTATATGAGTTACATGTGTTATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTTTTAATACCTAAGAGTGTATATGAGTTACATGTGTTATCATA  550

seq1  AGAATTCAAAACTGATAAACAGAAGAAATTAAAAGAAATCTTTATTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAAAACTGATAAACAGAAGAAATTAAAAGAAATCTTTATTGGCA  600

seq1  GTTTCAATTTTGTAATGAATTTGTTTTTGAAATACTTTTTTGAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATTTTGTAATGAATTTGTTTTTGAAATACTTTTTTGAATGAAAA  650

seq1  TCTTTATCTTGGGAAATATATACTTTAAATATTTCCAAAAGTCACAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTTGGGAAATATATACTTTAAATATTTCCAAAAGTCACAATCA  700

seq1  CAGTGTTCACCTGAGCCATGTTGATGAAGCCTAAAGACAATGTCCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCACCTGAGCCATGTTGATGAAGCCTAAAGACAATGTCCAATGA  750

seq1  GAAGTCAGAGAGCTCTAGCAGGTTTTATATATCAAGGTAGGAAATAAAAG  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGTCAGAGAGCTCTAGCA-GTTTTATATATCAAGGTAGGAAATAAAAG  799

seq1  CGTAAAAATCAGTTACAAGTTGGATACAATCTTGATCAAGCATCATACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAAATCAGTTACAAGTTGGATACAATCTTGATCAAGCATCATACTT  849

seq1  T-GGAAAGTCATTGTCTAAGATGTATTGCAATGGTTCC-TCTTAGTATGT  898
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGAAAGTCATTGTCTAAGATGTATTGCAATGGTTCCTTCTTAGTATGT  899

seq1  GGCCAG-AATACACA-TACCCCAAATAAAAATTAATTTACTGATCATGAA  946
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAATACACATTACCCCAAATAAAAATTAATTTACTGATCATGAA  949

seq1  CTA-TGAATCTTGGAATGTAAATAAGTGCATGATCAAGATATTTGGGTCA  995
      ||| ||||||||||||||| ||||||||||||||| |||||||  |||||
seq2  CTATTGAATCTTGGAATGT-AATAAGTGCATGATC-AGATATT--GGTCA  995

seq1  AAGCTGATGGGAGCAAGATGATACAAACTGGAACAAGGAATTTGAAATAG  1045
      |||||||||||||| ||||||||| ||||||||||  ||  ||| || ||
seq2  AAGCTGATGGGAGC-AGATGATAC-AACTGGAACA--GA--TTGGAAAAG  1039

seq1  TAGAGCTAATATGGTGTCATGAAGTAACTGCATCCTCATTATTTCACGTC  1095
       ||||||                                           
seq2  AAGAGCT-------------------------------------------  1046

seq1  ATAACTTTAGGGTAGCTGGGATTACAGGTAATGTCAAAGCACTATGCTCA  1145
                                                        
seq2  --------------------------------------------------  1046

seq1  AATCTATTATAGGAAACTGAAATGATTCTGATGGTGTATTAAAGAAGAGC  1195
                                                        
seq2  --------------------------------------------------  1046

seq1  T  1196
       
seq2  -  1046

seq1: chr2_42668124_42669203
seq2: B6Ng01-101N02.g_71_1140 (reverse)

seq1  ACTAGCACAATATGTGCTCCTTATTTTGAATTAAAATTTATTGTACTTTT  50
      |||||||||| ||||||||     || ||||||||||||| |||||||  
seq2  ACTAGCACAAAATGTGCTC---GATTGGAATTAAAATTTA-TGTACTT--  44

seq1  CCATAACTTATAAAGAAAATTTTAGGCTTAAAATGGAGTGATAAAATACT  100
       || | ||||||||||||||||||||||  ||| |||||||||||  |||
seq2  -CAAACCTTATAAAGAAAATTTTAGGCT--AAAAGGAGTGATAAA--ACT  89

seq1  GCCAAATATTTCCATCTCTTTTCCCAGGTTTGTGTTAATTATATTAAAG-  149
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  GCCAAATA-TTCCATCTCTTTTCCCAGGTTTGTGTTAATTATATTAAAGA  138

seq1  AAACATAGTGTGTGGTTTGAAATTTAATCTCACTTCAATAGTATGAATTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGTGTGTGGTTTGAAATTTAATCTCACTTCAATAGTATGAATTA  188

seq1  ATGTCCAAAACTTACTGAGGTTACAAGTGCTGTTATATTGTCTCCTCTCA  249
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ATGTCCAAAACTTACTGAGGTTACAAGTGCTGTTATA-TGTTTCCTCTCA  237

seq1  GTAGCAACATTCTAAAGGCTGGTTTTGATTTTAGAATTGATGGGACTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACATTCTAAAGGCTGGTTTTGATTTTAGAATTGATGGGACTTAG  287

seq1  AAGCACACAGGGAGCACATCTCTGAGAATGTCTGTGAGAGCATTGTCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGGGAGCACATCTCTGAGAATGTCTGTGAGAGCATTGTCAAA  337

seq1  GGGAGTT-AACTAAGGGCATAAACCCACCCTCTCCAAATGACATCAAT-G  397
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GGGAGTTAAACTAAGGGCATAAACCCACCCTCTCCAAATGACATCAATGG  387

seq1  GTTTAAGTGGTCTGTGGGAAAGCCTTGTCTCTTATCCATCTGAGTGTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTGGTCTGTGGGAAAGCCTTGTCTCTTATCCATCTGAGTGTATT  437

seq1  TGTCTCTGAGGCTTTCAGCCTACAGTAACTGATACTCAGATATACCCATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGAGGCTTTCAGCCTACAGTAACTGATACTCAGATATACCCATC  487

seq1  CTTGTGGGTAAGCCAATGTAATAAACCATTTTTATATTAAATACATCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGTAAGCCAATGTAATAAACCATTTTTATATTAAATACATCTGC  537

seq1  AGTCAATTTGTTCTGTTCCTCTAGAGAACTCTACCTAATAGAATTTAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTGTTCTGTTCCTCTAGAGAACTCTACCTAATAGAATTTAAAA  587

seq1  ATAACATGGTCCAGGATGTAACCCACATAAGATCTGCTGGTGAGTTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGGTCCAGGATGTAACCCACATAAGATCTGCTGGTGAGTTCAAA  637

seq1  CTGTTGAGGGATATTCTGTCTAGTAAGCAATAAATTTCCAGAGTGCAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGGGATATTCTGTCTAGTAAGCAATAAATTTCCAGAGTGCAGAA  687

seq1  TGGGTGTTTCAGGATCAGATGTGAAATAAAGTAGGAGGGATGGCCAGATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTCAGGATCAGATGTGAAATAAAGTAGGAGGGATGGCCAGATA  737

seq1  GCCATGAGAACAGGGACACCAACCCACCCAGAAAACTTTCTACCCAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGAACAGGGACACCAACCCACCCAGAAAACTTTCTACCCAAAAT  787

seq1  TTACCTTGTCTGTAAGAAGTGCAGACATAGGCAATGGAACAGAGACTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTCTGTAAGAAGTGCAGACATAGGCAATGGAACAGAGACTGAG  837

seq1  GGAGTTGAAAATCAATAACCAGCCCAATTTTAAACCCATTTCGTGGGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAAAATCAATAACCAGCCCAATTTTAAACCCATTTCGTGGGCAC  887

seq1  CCACCAATCTTTAAACCATTAATGATCCTTTGTTATGCTTACAGACAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATCTTTAAACCATTAATGATCCTTTGTTATGCTTACAGACAGGA  937

seq1  ATATAGTATGGCTGCCCTCTGGTAGGACATCCAGCAGCTGACTCAGAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTATGGCTGCCCTCTGGTAGGACATCCAGCAGCTGACTCAGAGAG  987

seq1  ATAATTACACCCAAGCCAAACAGCGTACTGACTTTTATTGGAGAATAGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACACCCAAGCCAAACAGCGTACTGACTTTTATTGGAGAATAGGA  1037

seq1  GGAACAATTCAACCCCTAAGGGATTAGGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  GGAACAATTCAACCCCTAAGGGATTAGGAATTC  1070