BAC Information

Click to search

BAC

Clone NameB6Ng01-102N07
Chromosome2 (Build37)
Map Location 171,300,797 - 171,418,956
singlet/doubletdoublet
Overlap genenone
Upstream geneCyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102N07.bB6Ng01-102N07.g
ACCDH911609DH911610
length996964
definitionDH911609|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N07, 5' end.DH911610|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,418,405 - 171,418,956)(171,300,797 - 171,301,581)
sequence
gaattcttactgttattcatattaaccttttagtagatgtatagtttaga
aaattttctcccatccttagggtttttttttttttttacactctattatc
tcttatctttgatttattttctatgctggaaattttaatcagatatgtcg
cacttgtctatttaaacctttgtcctctttctcttcagtgtcagagtcaa
ggtcaagagcatgaagctgtctcctatgtaaatcttatggtttgaggtgt
gacatttatgtttaatacttttgggtttgagtgtgtgtgtgtgtgtgtgt
gtgtgtgaaaggtacatgataagggctggaattaactaattaattacaaa
caaactaattaatcgattgcttggtgcagggagtctgggtgtggatttcc
agtctgcgcggcacaacttgctgaagaactatcttttctcaagtcgtgca
tgtctatatcaattgtgtgtttatgacttctgcatcattggcccgtctgc
ctgcctttacattagtaccctcttaacacacactgtatactgtacctttt
aaatatatttacgtatgaggagatctaatgtattcagttctgttccttcg
tctcaagatcgttctggcctttctggatactttgttattccatatacgtt
tagtattgttttctatttttaataaaaatgccagtataatattaatgaaa
acagcctttgatctcacagatctctctaggcagtgcggggcctggtgagg
atattaatactttcaacgtgcagacatgagagatctttctatctgtatct
ttgtagttgttagtgcccgaggcttttacattttttgataagtttattcc
ctgggtagttattcttctttggctatgggtgctcttattttttactgctc
aaatccccctgaagcagggtgtttgtcatttttctatctaatggggtgca
ctcatcgacatgatacagggtccttataccacttatgactatgttt
gaattctgggaagcagatgcaggaggtttcctggagctcaatgaccaacc
cagggtggctcaatcagtgagctcctggttcagtgaaagtcactgtcttt
gaagtgggatgagggatctagagttgacttagtggttaaaagcacttgct
gctactgcagaagatatgggttcggttaccaggacccaaagtgcctcccc
atgatgctctctttgtggcctctgaaggcaccaaactcttaagcacatgg
aggcaacactcataaattgaaattttaaagcaaatatcttttagaaagcc
ttgattccttggtgtcctgcaccctctccgtcggttacaatctttcctcc
tccacttccacaatgttcacagagcgatgagccgtgggaactgatggaga
cattctatttaggactctacacattgttcagcggtgggtctcggtattta
ctttcatctactgcagggggaaacctctctgatgatagctgatcaagaca
cggatctgagtgtagcagaatgttgtcaggactcgttttaatgagtctgg
cttcctgctatgtctatgtcctaacttatatcaggtccctggtcacctga
gcagtttcagggataggttctatctacagagtggccttaattccaatcta
gtattggttggttacacccacaagctttgtgccaccattgcactagtacc
tcttgtgtgtaggtcaccactgtagattgaaggatttgttgttgtgttgg
cgttcacctttctcctttggtcataagcacagtaccttctggtagcatga
gcaacaggactgatgcatatatgaactcacagagactggggcagcatgca
caggatctgcataggtctgcaccagattgggtaccagttgccaagagttg
gggctgacataacccgtatccctaacacaggaactatcttcagttatagc
cccttgcaaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171418405_171418956
seq2: B6Ng01-102N07.b_493_1040 (reverse)

seq1  AAACATAGTCTATAGTGGTATAAAGTACCCTGTATCATGTACGATGAGTG  50
      ||||||||||   |||||||| ||| |||||||||||||| |||||||||
seq2  AAACATAGTCATAAGTGGTAT-AAGGACCCTGTATCATGT-CGATGAGTG  48

seq1  CACACCAATAGATTAGAAAAAATGACAAACACCTCGCTTCAGGGGGATTT  100
      ||| ||| |||| ||| ||||||||||||||||  |||||||||||||||
seq2  CACCCCATTAGA-TAG-AAAAATGACAAACACCCTGCTTCAGGGGGATTT  96

seq1  GAGCAGTAAAAAATAAAGAGCACCCATAGACAAAAGAAGAATAAACTACC  150
      |||||||||||||| |||||||||||||| | |||||||||| |||||||
seq2  GAGCAGTAAAAAAT-AAGAGCACCCATAG-CCAAAGAAGAAT-AACTACC  143

seq1  CA-GGAATAAACTTAATCAAAAATGTAAAAGCCTCGGGCACTAACAACTA  199
      || ||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CAGGGAATAAACTTATCAAAAAATGTAAAAGCCTCGGGCACTAACAACTA  193

seq1  CAAAGATACAGATAGAAAGATCTCTCATGTCTGCACGTTGAAAGTATTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATACAGATAGAAAGATCTCTCATGTCTGCACGTTGAAAGTATTAA  243

seq1  TATCCTCACCAGG-CCCGCACTGCCTAGAGAGATCTGTGAGATC-AAGGC  297
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TATCCTCACCAGGCCCCGCACTGCCTAGAGAGATCTGTGAGATCAAAGGC  293

seq1  TGTTTTCATTAATATTATACTGGCATTTTTATTAAAAATAGAAAACAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATTAATATTATACTGGCATTTTTATTAAAAATAGAAAACAATA  343

seq1  CTAAACGTATATGGAATAACAAAGTATCCAGAAAGGCCAGAACGATCTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGTATATGGAATAACAAAGTATCCAGAAAGGCCAGAACGATCTTG  393

seq1  AGACGAAGGAACAGAACTGAATACATTAGATCTCCTCATACGTAAATATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAAGGAACAGAACTGAATACATTAGATCTCCTCATACGTAAATATA  443

seq1  TTTAAAAGGTACAGTATACAGTGTGTGTTAAGAGGGTACTAATGTAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGTACAGTATACAGTGTGTGTTAAGAGGGTACTAATGTAAAGG  493

seq1  CAGGCAGACGGGCCAATGATGCAGAAGTCATAAACACACAATTGATATAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACGGGCCAATGATGCAGAAGTCATAAACACACAATTGATATAG  543

seq1  ACATG  552
      |||||
seq2  ACATG  548

seq1: chr2_171300797_171301581
seq2: B6Ng01-102N07.g_70_854

seq1  GAATTCTGGGAAGCAGATGCAGGAGGTTTCCTGGAGCTCAATGACCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAGCAGATGCAGGAGGTTTCCTGGAGCTCAATGACCAACC  50

seq1  CAGGGTGGCTCAATCAGTGAGCTCCTGGTTCAGTGAAAGTCACTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGCTCAATCAGTGAGCTCCTGGTTCAGTGAAAGTCACTGTCTTT  100

seq1  GAAGTGGGATGAGGGATCTAGAGTTGACTTAGTGGTTAAAAGCACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGATGAGGGATCTAGAGTTGACTTAGTGGTTAAAAGCACTTGCT  150

seq1  GCTACTGCAGAAGATATGGGTTCGGTTACCAGGACCCAAAGTGCCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCAGAAGATATGGGTTCGGTTACCAGGACCCAAAGTGCCTCCCC  200

seq1  ATGATGCTCTCTTTGTGGCCTCTGAAGGCACCAAACTCTTAAGCACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTCTCTTTGTGGCCTCTGAAGGCACCAAACTCTTAAGCACATGG  250

seq1  AGGCAACACTCATAAATTGAAATTTTAAAGCAAATATCTTTTAGAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACACTCATAAATTGAAATTTTAAAGCAAATATCTTTTAGAAAGCC  300

seq1  TTGATTCCTTGGTGTCCTGCACCCTCTCCGTCGGTTACAATCTTTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCTTGGTGTCCTGCACCCTCTCCGTCGGTTACAATCTTTCCTCC  350

seq1  TCCACTTCCACAATGTTCACAGAGCGATGAGCCGTGGGAACTGATGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCACAATGTTCACAGAGCGATGAGCCGTGGGAACTGATGGAGA  400

seq1  CATTCTATTTAGGACTCTACACATTGTTCAGCGGTGGGTCTCGGTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATTTAGGACTCTACACATTGTTCAGCGGTGGGTCTCGGTATTTA  450

seq1  CTTTCATCTACTGCAGGGGGAAACCTCTCTGATGATAGCTGATCAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTACTGCAGGGGGAAACCTCTCTGATGATAGCTGATCAAGACA  500

seq1  CGGATCTGAGTGTAGCAGAATGTTGTCAGGACTCGTTTTAATGAGTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCTGAGTGTAGCAGAATGTTGTCAGGACTCGTTTTAATGAGTCTGG  550

seq1  CTTCCTGCTATGTCTATGTCCTAACTTATATCAGGTCCCTGGTCACCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCTATGTCTATGTCCTAACTTATATCAGGTCCCTGGTCACCTGA  600

seq1  GCAGTTTCAGGGATAGGTTCTATCTACAGAGTGGCCTTAATTCCAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCAGGGATAGGTTCTATCTACAGAGTGGCCTTAATTCCAATCTA  650

seq1  GTATTGGTTGGTTACACCCACAAGCTTTGTGCCACCATTGCACTAGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTTGGTTACACCCACAAGCTTTGTGCCACCATTGCACTAGTACC  700

seq1  TCTTGTGTGTAGGTCACCACTGTAGATTGAAGGATTTGTTGTTGTGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGTAGGTCACCACTGTAGATTGAAGGATTTGTTGTTGTGTTGG  750

seq1  CGTTCACCTTTCTCCTTTGGTCATAAGCACAGTAC  785
      |||||||||||||||||||||||||||||||||||
seq2  CGTTCACCTTTCTCCTTTGGTCATAAGCACAGTAC  785