BAC Information

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BAC

Clone NameB6Ng01-102P08
Chromosome2 (Build37)
Map Location 33,405,865 - 33,562,380
singlet/doubletdoublet
Overlap geneLmx1b, LOC100041918
Upstream geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764
Downstream gene2610528K11Rik, LOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102P08.bB6Ng01-102P08.g
ACCDH911699DH911700
length1,1571,154
definitionDH911699|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P08, 5' end.DH911700|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,405,865 - 33,407,034)(33,561,217 - 33,562,380)
sequence
gaattcaaggttccccttggctatataacaagtttaaggccagcatcgga
tatatgaagttatgaaatctgtctctcccctccctaccccgagacccaaa
aacaatcagccagagaaaagaaaaagttgaggacaaagcaatgacattgg
aatgacagatgaggcatccacagctaccacaggattctgcagggaagccc
aggccagagagatgcctcagtgcttaagagctcttgctgctcaagaggac
cagagctcagttccagcgtacacaggcagctcaccaccacctgtaactcc
agctcaggggatccgatggccttttctggcctctacaggcactgcactca
cacatacacacccaaacatagggatgtatgcatagctacataatatatga
taaaaataaagtattttaaaaaagaaatcagaagttatctctaaaggcat
ctcaactatcaaaataatgtgaatgagataagacattcagcaatgattat
ttatttatttatttatttatttatttatttatttatttattttgtttttc
aagacagggtttctctttgtagccttagctgtcctggaactcactctgta
gaccaggctggcctcgaactcagaaatctgccttcctctgcctcccaagt
gctggattaaaggcctgcgccaccatgcccagtttataaaagttttagta
tcaggaagatgtaacaatgtagccaataaagtaacctcaaaacatgcaga
gcactgatgggcaggagtagtgagatggggagacccatgaccatcacagg
tctcaatctacctcttcagattgttgctactccaagcagaggagaaatgg
aaacattgaagttttaaattacacaataaacttccacttgctaaggcaaa
ttgctaggggttctaaaggcttaattgcaacagttgggaagtagtctttg
caggcacaagtgggatcagtgtaagcacacaagaacacagtggacttgtg
ttttacatatcaaatgtatattggacccagtgagcactgagcggtgaaaa
cactgctgcaatgcatggcctgtctcatgttcctcctcgatctcacagtt
ccaccaggaattcactcattcatgcactccaactcgcaatgcataaatgg
taaaaaa
gaattcagatcccccaaatcggaacacatgatacaaactagttgctctgg
gcttgggtttccagaatccccccagagatagatgctagcaatcctagctg
gcaagtcccgctagcccacccctgaggaatgtttcttactcaggagttat
aagctaggacagtaacattcctccacacctctggatgctgccttggagcc
ctggtttgaaaggtatcctgcttcccacagacaacgcactcatgtcagga
atgccaccaaaatggagcgaagggtcaaaagcacgaaaatgaaaccgagg
tctgcctacgctggggctggtgcctgtcctggcatcatgggagctccctg
taacaccacgcatgaggtaaacacaaggccattatttgtgggacccgcct
gttgctttaagttcccccacaacaccagaggaagcaggcgcaatattttt
gaaattagaaacagcccccaagtctttgccccctcactgactgtgcttgg
tattaatccattaaggcaatcaaaacagcttaaataaaagtctgaagccc
gcaatatacatgtcaatgaacaagcagtaaggcttcctgaaaaggtgatt
tcaaagccatattgcccacgcttggcaaattgcatatttaattactgtgt
cagttcccccccagctctaatctttggggaaaatgccttgggccatgcga
aaccagttaggataattaagggaccgtgggattaggtgtcggctgatttc
tcaaaagataccatcctctagcctggtatgagatgtgtgcctgccccaga
aggccagcagcgtggtgatgtctgccgctctatggcaagatcaaaggtct
tttacctctttcaagatgtttgtagaatttgtttcctaattatcccacat
ttacgcactgggacatcctagttaactctttggtgacacctctggcgctg
ggctgtagaggcatcaagtggccttccgctccccgcctcactgaggtttc
agtctgagatctgagctcagagagtcggaaagatgggggcgcaggctggg
ttggtcccttggggtgtagcatgttctgtgcttcagcagtaccaccttcc
aatcattctcttgcctcgaagttaatgggtacggcaagtgcggacatcat
gcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33405865_33407034
seq2: B6Ng01-102P08.b_46_1202

seq1  GAATTCAAGGTTCCCCTTGGCTATATAACAAGTTTAAGGCCAGCATCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTCCCCTTGGCTATATAACAAGTTTAAGGCCAGCATCGGA  50

seq1  TATATGAAGTTATGAAATCTGTCTCTCCCCTCCCTACCCCGAGACCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAGTTATGAAATCTGTCTCTCCCCTCCCTACCCCGAGACCCAAA  100

seq1  AACAATCAGCCAGAGAAAAGAAAAAGTTGAGGACAAAGCAATGACATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAGCCAGAGAAAAGAAAAAGTTGAGGACAAAGCAATGACATTGG  150

seq1  AATGACAGATGAGGCATCCACAGCTACCACAGGATTCTGCAGGGAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGATGAGGCATCCACAGCTACCACAGGATTCTGCAGGGAAGCCC  200

seq1  AGGCCAGAGAGATGCCTCAGTGCTTAAGAGCTCTTGCTGCTCAAGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGAGATGCCTCAGTGCTTAAGAGCTCTTGCTGCTCAAGAGGAC  250

seq1  CAGAGCTCAGTTCCAGCGTACACAGGCAGCTCACCACCACCTGTAACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCAGTTCCAGCGTACACAGGCAGCTCACCACCACCTGTAACTCC  300

seq1  AGCTCAGGGGATCCGATGGCCTTTTCTGGCCTCTACAGGCACTGCACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGATCCGATGGCCTTTTCTGGCCTCTACAGGCACTGCACTCA  350

seq1  CACATACACACCCAAACATAGGGATGTATGCATAGCTACATAATATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACCCAAACATAGGGATGTATGCATAGCTACATAATATATGA  400

seq1  TAAAAATAAAGTATTTTAAAAAAGAAATCAGAAGTTATCTCTAAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAGTATTTTAAAAAAGAAATCAGAAGTTATCTCTAAAGGCAT  450

seq1  CTCAACTATCAAAATAATGTGAATGAGATAAGACATTCAGCAATGATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTATCAAAATAATGTGAATGAGATAAGACATTCAGCAATGATTAT  500

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGTTTTTC  550

seq1  AAGACAGGGTTTCTCTTTGTAGCCTTAGCTGTCCTGGAACTCACTCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGTTTCTCTTTGTAGCCTTAGCTGTCCTGGAACTCACTCTGTA  600

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTTCCTCTGCCTCCCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTTCCTCTGCCTCCCAAGT  650

seq1  GCTGGATTAAAGGCCTGCGCCACCATGCCCAGTTTATAAAAGTTTTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTAAAGGCCTGCGCCACCATGCCCAGTTTATAAAAGTTTTAGTA  700

seq1  TCAGGAAGATGTAACAATGTAGCCAATAAAGTAACCTCAAAACATGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGATGTAACAATGTAGCCAATAAAGTAACCTCAAAACATGCAGA  750

seq1  GCACTGATGGGCAGGAGTAGTGAGATGGGGAGACCCATGACCATCACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGATGGGCAGGAGTAGTGAGATGGGGAGACCCATGACCATCACAGG  800

seq1  TCTCAATCTACCTCTTCAGATTGTTGCTACTCCAAGCAGAGGAGAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTACCTCTTCAGATTGTTGCTACTCCAAGCAGAGGAGAAATGG  850

seq1  AAACATTGAAGTTTTAAATTACACAATAAACTTCCACTTGCTAAGGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGAAGTTTTAAATTACACAATAAACTTCCACTTGCTAAGGCAAA  900

seq1  TTGCTAGGGGTTCTAAAGGCTTAAATGCAACAGTTGGGAAAGTAAGTCTT  950
      |||||||||||||||||||||||| ||||||||||||| |||| ||||||
seq2  TTGCTAGGGGTTCTAAAGGCTTAATTGCAACAGTTGGG-AAGT-AGTCTT  948

seq1  TGCAGGCACAAGTGGGATCAGTGTAAGCACACAAGAACACAGTGGACTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCACAAGTGGGATCAGTGTAAGCACACAAGAACACAGTGGACTTG  998

seq1  TGTTTTACATATCAAAATGTAATATGGACCCAGTGAAGCAACTGAGCGGG  1050
      ||||||||||||| |||||||   ||||||||||| ||| ||||||| ||
seq2  TGTTTTACATATC-AAATGTATATTGGACCCAGTG-AGC-ACTGAGC-GG  1044

seq1  TGAAAACACTTGCTGCCAAATGCCATGGCCTGGTCTCATGTT-CTCCTCC  1099
      ||||||||| ||||||  |||| |||||||| |||||||||| ||||| |
seq2  TGAAAACAC-TGCTGC--AATG-CATGGCCT-GTCTCATGTTCCTCCT-C  1088

seq1  GATCTCCACAGTCCCACCAGGACATCACCCA-TCATGCACTCACAAACCC  1148
      ||||| |||||| |||||||||  |||| || |||||||||  | ||| |
seq2  GATCT-CACAGTTCCACCAGGAATTCACTCATTCATGCACT--CCAACTC  1135

seq1  GCAAATGCATAAAT-GTAAAAAA  1170
      || ||||||||||| ||||||||
seq2  GC-AATGCATAAATGGTAAAAAA  1157

seq1: chr2_33561217_33562380
seq2: B6Ng01-102P08.g_67_1220 (reverse)

seq1  TTGCACTGATGTCCGCACTTGCCGCTACCCATGTACATCGAAGGCAGAGA  50
      ||||| |||||||||||||||||| |||||||  || |||| |  |||||
seq2  TTGCA-TGATGTCCGCACTTGCCG-TACCCATTAACTTCGAGGCAAGAGA  48

seq1  ATGGATGGGAAGGGTGTGTACTGCTG-AGCACAGAACATGGCTACACCCC  99
      || ||| |||| |||| ||||||||| |||||||||||| ||||||||||
seq2  AT-GATTGGAA-GGTG-GTACTGCTGAAGCACAGAACAT-GCTACACCCC  94

seq1  AAGGGACCAAACCCAGGCCTGCGCCCCATTCTCTCCGACTCTCTGAGCTC  149
      |||||||| |||||| |||||||||||  ||| |||||||||||||||||
seq2  AAGGGACC-AACCCA-GCCTGCGCCCCCATCTTTCCGACTCTCTGAGCTC  142

seq1  AGATCTCAGACTGAAACCTCAGTGAGGCGGGGAGGCGGGAAGGCCACTTG  199
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  AGATCTCAGACTGAAACCTCAGTGAGGCGGGGAG--CGGAAGGCCACTTG  190

seq1  ATGCCTCTTACAGCCCAGCGCCAGAGGTGTCACCAAAGAGTTAACTAGGA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTC-TACAGCCCAGCGCCAGAGGTGTCACCAAAGAGTTAACTAGGA  239

seq1  TGTCCCAGTGCGTAAATGTGGGATAATTAGGAAACAAATTCTACAAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGTGCGTAAATGTGGGATAATTAGGAAACAAATTCTACAAACAT  289

seq1  CTTGAAAGAGGTAAAAGACCTTTGATCTTGCCATAGAGCGGCAGACATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAGGTAAAAGACCTTTGATCTTGCCATAGAGCGGCAGACATCA  339

seq1  CCACGCTGCTGGCCTTCTGGGGCAGGCACACATCTCATACCAGGCTAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTGCTGGCCTTCTGGGGCAGGCACACATCTCATACCAGGCTAGAG  389

seq1  GATGGTATCTTTTGAGAAATCAGCCGACACCTAATCCCACGGTCCCTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATCTTTTGAGAAATCAGCCGACACCTAATCCCACGGTCCCTTAA  439

seq1  TTATCCTAACTGGTTTCGCATGGCCCAAGGCATTTTCCCCAAAGATTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAACTGGTTTCGCATGGCCCAAGGCATTTTCCCCAAAGATTAGA  489

seq1  GCTGGGGGGGAACTGACACAGTAATTAAATATGCAATTTGCCAAGCGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGGGAACTGACACAGTAATTAAATATGCAATTTGCCAAGCGTGG  539

seq1  GCAATATGGCTTTGAAATCACCTTTTCAGGAAGCCTTACTGCTTGTTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGGCTTTGAAATCACCTTTTCAGGAAGCCTTACTGCTTGTTCAT  589

seq1  TGACATGTATATTGCGGGCTTCAGACTTTTATTTAAGCTGTTTTGATTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTATATTGCGGGCTTCAGACTTTTATTTAAGCTGTTTTGATTGC  639

seq1  CTTAATGGATTAATACCAAGCACAGTCAGTGAGGGGGCAAAGACTTGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGATTAATACCAAGCACAGTCAGTGAGGGGGCAAAGACTTGGGG  689

seq1  GCTGTTTCTAATTTCAAAAATATTGCGCCTGCTTCCTCTGGTGTTGTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTAATTTCAAAAATATTGCGCCTGCTTCCTCTGGTGTTGTGGG  739

seq1  GGAACTTAAAGCAACAGGCGGGTCCCACAAATAATGGCCTTGTGTTTACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTAAAGCAACAGGCGGGTCCCACAAATAATGGCCTTGTGTTTACC  789

seq1  TCATGCGTGGTGTTACAGGGAGCTCCCATGATGCCAGGACAGGCACCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGTGGTGTTACAGGGAGCTCCCATGATGCCAGGACAGGCACCAGC  839

seq1  CCCAGCGTAGGCAGACCTCGGTTTCATTTTCGTGCTTTTGACCCTTCGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGTAGGCAGACCTCGGTTTCATTTTCGTGCTTTTGACCCTTCGCT  889

seq1  CCATTTTGGTGGCATTCCTGACATGAGTGCGTTGTCTGTGGGAAGCAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGGTGGCATTCCTGACATGAGTGCGTTGTCTGTGGGAAGCAGGA  939

seq1  TACCTTTCAAACCAGGGCTCCAAGGCAGCATCCAGAGGTGTGGAGGAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCAAACCAGGGCTCCAAGGCAGCATCCAGAGGTGTGGAGGAATG  989

seq1  TTACTGTCCTAGCTTATAACTCCTGAGTAAGAAACATTCCTCAGGGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCTAGCTTATAACTCCTGAGTAAGAAACATTCCTCAGGGGTGG  1039

seq1  GCTAGCGGGACTTGCCAGCTAGGATTGCTAGCATCTATCTCTGGGGGGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCGGGACTTGCCAGCTAGGATTGCTAGCATCTATCTCTGGGGGGAT  1089

seq1  TCTGGAAACCCAAGCCCAGAGCAACTAGTTTGTATCATGTGTTCCGATTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACCCAAGCCCAGAGCAACTAGTTTGTATCATGTGTTCCGATTT  1139

seq1  GGGGGATCTGAATTC  1164
      |||||||||||||||
seq2  GGGGGATCTGAATTC  1154