BAC Information

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BAC

Clone NameB6Ng01-104P19
Chromosome5 (Build37)2 (Build37)
Map Location 107,833,833 - 107,834,143181,078,718 - 181,079,191
singlet/doubletsingletsinglet
Overlap geneAbhd7
Upstream geneBarhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535
Downstream gene4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104P19.bB6Ng01-104P19.g
ACCDH913128DH913129
length310468
definitionDH913128|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P19, 5' end.DH913129|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,833,833 - 107,834,143)(181,078,718 - 181,079,191)
sequence
gaattcaaggacagcttaattgacttagtgaaaccaggtctcaaagaaat
aagaggaaaataggtttaggatatagctcagtggcagagcacttgcctgg
tgggcacagggttttggagtgatccccagtactacaggaaacaacacaca
cacaccaggaccatacaaagcataattctatttacatgaaatcttagaac
tatagcattctatgacagtgggcatggtaatgaatttgttaaaattcatg
tgtgttatgattaatatgggtgaatatcatatgtacaaattagactttaa
taaagatttt
tttttttttccccccaaagatttatttattactataaatgagtacactgt
tgctgtctttacacataccagaagagggtgtcagatctcattagatctca
ttacgggtggttgtgagccaccatgtggttgttgggatttgaactcagga
cctctggaagagcagtcagtactcttacctgctgagccatcttgtcagcc
cccagctggaattcttttgtttttgtttttgtttttgtttttttcgagac
agggtttctctgtgtagccttggctgtcctggaactcactttgtagacca
ggctggcctcgaactcagagatccgcctgcctctgcctcccaagtgctgg
gattaaaggtgtgcgccaccacgcccggctcgaatttttatattttcttt
tgaaacatttaaacattacctcaattctttttttgtttttgtttttgatt
tttttttcaagacagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107833833_107834143
seq2: B6Ng01-104P19.b_114_356 (reverse)

seq1  AAAATCTTTATTAAA-TCCAATCTGGTGGCCCTGGCATTTTATTCTTCCA  49
      ||||||||||||||| || |||    ||  | |   ||  |||||  || 
seq2  AAAATCTTTATTAAAGTCTAAT---TTGTACAT---ATGATATTC-ACCC  43

seq1  AGACTCACCACCACTAAAAT-AATTTTTAAAAGATAACAGCCAAGTCACA  98
      | | | | ||  ||  | || |||||| | ||  | |   ||| | | ||
seq2  ATATTAATCATAACACACATGAATTTTAACAAATTCATTACCATG-CCCA  92

seq1  TTTGTTAATTCTGTCCAACTTAAGGATGAAACACAGCTTATGACTCTTCC  148
                |||||       || |||  | |    || | |   ||| 
seq2  ----------CTGTC-----ATAGAATGCTATA---GTTCTAAGATTTCA  124

seq1  TGGATTCCTCAGAATTACTCTCTTTTCCCCTCAAAAGCAGAAGGAAGAAA  198
      ||   |    |||||||  || |                | | |  |   
seq2  TG---TAAATAGAATTATGCTTT----------------GTATG--GTCC  153

seq1  TAGTG-GTGACTCTAGTCACCTGTA-TACT--TCATTCCTCTTAACTTGT  244
      | ||| |||  | | ||  |||||| ||||    ||  |||  ||     
seq2  TGGTGTGTGTGTGTTGTTTCCTGTAGTACTGGGGATCACTCCAAA-----  198

seq1  TTATTTAGTGACGCCGGGGGACACATTGGTCATGCCAGGCGAGTGCTCTG  294
                          || |  ||  ||  |||||| |||||||||
seq2  --------------------ACCCTGTGCCCA--CCAGGCAAGTGCTCTG  226

seq1  CCACTGAGCTACATCCT  311
      ||||||||||| |||||
seq2  CCACTGAGCTATATCCT  243

seq1: chr2_181078718_181079191
seq2: B6Ng01-104P19.g_67_540

seq1  GAATTCTTTTTTTTTCCCCCCAAAGATTTATTTATTACTATAAATGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTCCCCCCAAAGATTTATTTATTACTATAAATGAGTA  50

seq1  CACTGTTGCTGTCTTTACACATACCAGAAGAGGGTGTCAGATCTCATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCTGTCTTTACACATACCAGAAGAGGGTGTCAGATCTCATTAG  100

seq1  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAAC  150

seq1  TCAGGACCTCTGGAAGAGCAGTCAGTACTCTTACCTGCTGAGCCATCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTCTGGAAGAGCAGTCAGTACTCTTACCTGCTGAGCCATCTTG  200

seq1  TCAGCCCCCAGCTGGAATTCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCAGCTGGAATTCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTT  250

seq1  CGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTTGT  300

seq1  AGACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAG  350

seq1  TGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTCGAATTTTTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCTCGAATTTTTATATT  400

seq1  TTCTTTTGAAACATTTAAACATTACCTCAATTCTTTTTTTGTTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAAACATTTAAACATTACCTCAATTCTTTTTTTGTTTTTGTTT  450

seq1  TTGATTTTTTTTTCAAGACAGGGT  474
      ||||||||||||||||||||||||
seq2  TTGATTTTTTTTTCAAGACAGGGT  474