BAC Information

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BAC

Clone NameB6Ng01-105A02
Chromosome1 (Build37)2 (Build37)
Map Location 170,729,388 - 170,730,630100,609,965 - 100,610,459
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A02.bB6Ng01-105A02.g
ACCDH913142DH913143
length1,225490
definitionDH913142|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A02, 5' end.DH913143|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(170,729,388 - 170,730,630)(100,609,965 - 100,610,459)
sequence
gaattcactgtaggatagcattaaataactagcttcctgagtgcacttac
ataaagtctttttaagagcactgccattatagaaagtgagctaatattta
agctgaacatacaatgactctttaggggaaagagtgcttaactactgaga
gtaattgtggacttgctttaaatttaggaagtctccagtttctatggggc
cactgtaataattcctccaacctgggctatggctagctcatcagaaagaa
cacaactggaagagaagtaatgtcttttagggatatagggactgtgaata
cctaagagtcagattctattattttgccaacatggaataattaggttatt
atttatgcatcaattgaaatgatcactggatacatttgtaaccactctgc
aaagtgctaggaaatattgaaattggaattctatcaatatatagtcatta
agaatgtgaaggttggctaactatggcaatgtaaatcctgttgagctttt
aattgagcaagttcattctgctgcttgtgaatattgttctttgaaattta
gccaagtattacaaaaacaagtgtaattttttccttccatgtgaaagagt
gtctgtagcaggaagagacagcagatcaaatgaaggagggggaaagatac
aaagtttaaaggagacttgctttatttccagttagcagtgttatgaaatt
tttcaagcttaaactcacccaaaataagctcagatgtattaataatctgt
ttttaaatgtgtaaataatttgcaagagctttaaattgtctgaaatcata
gaccgtaacaatagaataagtcataatatctgagctttaaaactttttct
aaagtctgctatctgggcagataatgttaatgtcccaactattaatatat
tcatttcacaatttaagaacaatataaattcataaactaagtaaaaacag
agactaattattcagcctggagttacacatgatttgtaatacaggtggtt
ttccagcctataaaatataatattaatcttttataatattctcttttctg
tttaccaaatggaattatcttggcttggagaaagggccagaatatcaagg
caaaataaaccccatctataaatcatatttctctggaatttggtgcaaaa
tgggccgagaccagagcaatttctcttgtgttaaatcaagttgaacttgg
tcgttctagggtacgaggcttcaca
ctgatctttccaaaacttttatcatgaatgggtgttggatcttgtcaaat
gctttttctgcatctaacgagatgatcatgtggtttttgtctttgagttt
gtttatataatggattacattgatggattttcgtatattaaaccatccct
gcatccctggaataaaacctacttggtcaggatggatgatttctttaatg
tgttcttggattcggttagcgagaattttattaaggatttttgcatcgat
attcataagagaaattggtctgaagttctctatctttgttggatctttct
gtggtttaggtatcagagtaatagtggcttcataaaatgagttgggtaga
gtaccttctacttctatcttgtgaaatagtttgtgcagaactggaattag
atcttctttgaatgtctgatagaactctgcactaaacccatctggtcctg
ggctttttttgtttggtagactattaataactgcttctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170729388_170730630
seq2: B6Ng01-105A02.b_47_1271 (reverse)

seq1  TGTGAAGCCTTCTTACCCTCTTATAAATGATCACAAAATTCTAAACATAT  50
      ||||||||| || ||||||       |  |  || || |||  |||    
seq2  TGTGAAGCC-TCGTACCCT-------AGAACGACCAAGTTC--AAC----  36

seq1  GATTTTAATTAACAAAAGGAAAATATGACTTTTGGCTCTGGCCCATTTTG  100
         || | |||||| |||  |||| || || | | ||| |||||||||||
seq2  ---TTGATTTAACACAAGAGAAAT-TG-CTCTGGTCTC-GGCCCATTTTG  80

seq1  TGCCAAATATCAAGAAAATAATGAATAATAGATGGGTTTTATTTTCCCTG  150
        |||||| || ||| ||  |||| | ||||||||| |||||||| ||| 
seq2  CACCAAAT-TCCAGAGAAATATGATTTATAGATGGGGTTTATTTTGCCTT  129

seq1  TATATTTCTGCACTTTCTCC-AGCAAAGATAATT-CATTTTGTAAACAGA  198
       |||||   || |||||||| ||| ||||||||| ||||| |||||||||
seq2  GATATTCTGGCCCTTTCTCCAAGCCAAGATAATTCCATTTGGTAAACAGA  179

seq1  AAAG-GAATATTATAAAAGA-TAATATTATATTTTATAAGGCTGGAAAA-  245
      |||| ||||||||||||||| |||||||||||||||| ||||||||||| 
seq2  AAAGAGAATATTATAAAAGATTAATATTATATTTTAT-AGGCTGGAAAAC  228

seq1  CAACTGTA-TACAAATCATGTGTAACTCCAGGCTGAATAATTAGTCTCTG  294
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATTACAAATCATGTGTAACTCCAGGCTGAATAATTAGTCTCTG  278

seq1  TTTTTACTTAGTTTTATGAATTTATATTGTTTCTTAATTTGTGAAATGAA  344
      ||||||||||| ||||||||||||||||| ||||||| ||||||||||||
seq2  TTTTTACTTAG-TTTATGAATTTATATTG-TTCTTAAATTGTGAAATGAA  326

seq1  TATATTAATAGTTTGGGACATTAACATTATCTGCCCAGATAGCAGACTTT  394
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATAG-TTGGGACATTAACATTATCTGCCCAGATAGCAGACTTT  375

seq1  AGAAATAGTTTTAAAGCTCAGATATTATGACTTATTCTATTGTTACGGTC  444
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGTTTTAAAGCTCAGATATTATGACTTATTCTATTGTTACGGTC  425

seq1  TATGATTTCAGACAATTT-AAGCTCTTGCAAATTATTTACACATTTAAAA  493
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATGATTTCAGACAATTTAAAGCTCTTGCAAATTATTTACACATTTAAAA  475

seq1  ACAGATTATTAATACATCTGAGCTTATTTTGGGTGAGTTTAAGCTTGAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTATTAATACATCTGAGCTTATTTTGGGTGAGTTTAAGCTTGAAA  525

seq1  AATTTCATAACACTGCTAACTGGAAATAAAGCAAGTCTCCTTTAAACTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAACACTGCTAACTGGAAATAAAGCAAGTCTCCTTTAAACTTT  575

seq1  GTATCTTTCCCCCTCCTTCATTTGATCTGCTGTCTCTTCCTGCTACAGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTCCCCCTCCTTCATTTGATCTGCTGTCTCTTCCTGCTACAGAC  625

seq1  ACTCTTTCACATGGAAGGAAAAAATTACACTTGTTTTTGTAATACTTGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCACATGGAAGGAAAAAATTACACTTGTTTTTGTAATACTTGGC  675

seq1  TAAATTTCAAAGAACAATATTCACAAGCAGCAGAATGAACTTGCTCAATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCAAAGAACAATATTCACAAGCAGCAGAATGAACTTGCTCAATT  725

seq1  AAAAGCTCAACAGGATTTACATTGCCATAGTTAGCCAACCTTCACATTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAACAGGATTTACATTGCCATAGTTAGCCAACCTTCACATTCT  775

seq1  TAATGACTATATATTGATAGAATTCCAATTTCAATATTTCCTAGCACTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTATATATTGATAGAATTCCAATTTCAATATTTCCTAGCACTTT  825

seq1  GCAGAGTGGTTACAAATGTATCCAGTGATCATTTCAATTGATGCATAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGGTTACAAATGTATCCAGTGATCATTTCAATTGATGCATAAAT  875

seq1  AATAACCTAATTATTCCATGTTGGCAAAATAATAGAATCTGACTCTTAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTAATTATTCCATGTTGGCAAAATAATAGAATCTGACTCTTAGG  925

seq1  TATTCACAGTCCCTATATCCCTAAAAGACATTACTTCTCTTCCAGTTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGTCCCTATATCCCTAAAAGACATTACTTCTCTTCCAGTTGTG  975

seq1  TTCTTTCTGATGAGCTAGCCATAGCCCAGGTTGGAGGAATTATTACAGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGATGAGCTAGCCATAGCCCAGGTTGGAGGAATTATTACAGTG  1025

seq1  GCCCCATAGAAACTGGAGACTTCCTAAATTTAAAGCAAGTCCACAATTAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAGAAACTGGAGACTTCCTAAATTTAAAGCAAGTCCACAATTAC  1075

seq1  TCTCAGTAGTTAAGCACTCTTTCCCCTAAAGAGTCATTGTATGTTCAGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAGTTAAGCACTCTTTCCCCTAAAGAGTCATTGTATGTTCAGCT  1125

seq1  TAAATATTAGCTCACTTTCTATAATGGCAGTGCTCTTAAAAAGACTTTAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAGCTCACTTTCTATAATGGCAGTGCTCTTAAAAAGACTTTAT  1175

seq1  GTAAGTGCACTCAGGAAGCTAGTTATTTAATGCTATCCTACAGTGAATTC  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCACTCAGGAAGCTAGTTATTTAATGCTATCCTACAGTGAATTC  1225

seq1: chr2_100609965_100610459
seq2: B6Ng01-105A02.g_68_562 (reverse)

seq1  TAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGAT  50
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TAGAAGCAGTTATTAATAGTCTACCAAACAAAAAAAGCCCAGGACCAGAT  50

seq1  GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGTTTAGTGCAGAGTTCTATCAGACATTCAAAGAAGATCTAATTCCAGT  100

seq1  TCTGCACAAACTATTTCACAAGATAGAAGTAGAAGGTACTCTACCCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAAACTATTTCACAAGATAGAAGTAGAAGGTACTCTACCCAACT  150

seq1  CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA  200

seq1  ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAA  250

seq1  AATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGAAA  300

seq1  TCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTT  350

seq1  AATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGA  400

seq1  CAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGA  450

seq1  TCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  495