BAC Information

Click to search

BAC

Clone NameB6Ng01-106B08
Chromosome2 (Build37)
Map Location 11,484,280 - 11,634,906
singlet/doubletdoublet
Overlap geneRbm17, Il2ra, Il15ra
Upstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3
Downstream geneFbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B08.bB6Ng01-106B08.g
ACCDH913923DH913924
length4851,173
definitionDH913923|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B08, 5' end.DH913924|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,484,280 - 11,484,770)(11,633,722 - 11,634,906)
sequence
tgcagctggctgctttgttccattccatgttcaaataacagagagcaccc
ctcagattttggttgttgatgaatgatcctagaaacacttggtttttttt
gctaccaattagaactggccaacaaagataactgtctgtgtttaaaaact
tttggtgtgtccttgaagaaagtaacaagacacctgctagcagaagctgg
cttgtaaaacacccaagggccgctgggtgctgggatggaattctcttact
agagcacttgccttatacacacaaagcccaaggttagatcagtagttccg
taaacaaacaaaactaagaacaaagcaggatagccagtgccaacgtcaca
gacagaaacaggaagatcagaaggtcaaggtggctcttagctacactgtg
agttcaaggccaacctgggttatatgagacagagccaaaaagagacaatg
agaggaggaggagggagggaaaaataaagaggtgg
gaattcagtgaaacatactaggcctgaccttttagaaaatgttccctctg
tctgagaaagcctggacctttggacctgtgagtgagctattacattattt
gtggctggacattttccagctatcgatcagtatctccagagacttgtgag
ctcttcagggaaaaggctagaggaagacatctaaaagaactaccctttct
cttgtttgtcccaagcctgcttcttaacgttattgttattgtcttttctt
gggccagcagggatcttatgagatcacagtttattttgcttccctcagag
aactggcaggccctgccaatgggtcattttgaaaccttggaggtaaagga
gcctaagagtcccttcctcacacagggcatttcccgccttgcaattgcag
aggcaacacattctgcacagaacatccttttcctgatggctgacactgct
gtaaattctacttggtctttccacacatctggagcactcctgctccagga
acatggtgtgcggggtgtagaagatgaagcagatggacacagctgggagt
gataagacgtggtttaactgcaatgcctgaaaaaagtgccattgtgtaaa
agttcaaggatgagcaagaattagccagacattcaagggaaaagcagagc
aagcagtctagtctggtcaacaggagtcgatacatttccagaatggtcct
gtgagaggactcaatcactgtggctctgcagagcacgctcattgctggca
aggagaggagctcctctcgttgtcagaaccttgtgaaccctgcctgattg
gatgggaatatatatatatttaaagttagagctgaaagatagctcagtgc
ttcagagcaaatcctgttttccagagcacccgactacctgtaactccagc
ttcagaagacctattaccgtctctgtctgccctcgaatatgcccatagca
cacggcagacactcccacaggacatctatcgacccacaaataaatatgag
acacataatcttaaaatgaaatgagcggattgatggagccatgagctaga
gaaagagaagggatggacttgagtctgcccattgtacaagcctgctgtag
cttctcatcttctcctggcctcagatgactccctctgcaatcttcttttc
ggtgccatcccagacctcatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11484280_11484770
seq2: B6Ng01-106B08.b_45_535

seq1  GAATTCTGCAGCTGGCTGCTTTGTTCCATTCCATGTTCAAATAACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCTGGCTGCTTTGTTCCATTCCATGTTCAAATAACAGAGA  50

seq1  GCACCCCTCAGATTTTGGTTGTTGATGAATGATCCTAGAAACACTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCTCAGATTTTGGTTGTTGATGAATGATCCTAGAAACACTTGGTT  100

seq1  TTTTTTGCTACCAATTAGAACTGGCCAACAAAGATAACTGTCTGTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTACCAATTAGAACTGGCCAACAAAGATAACTGTCTGTGTTTA  150

seq1  AAAACTTTTGGTGTGTCCTTGAAGAAAGTAACAAGACACCTGCTAGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTGGTGTGTCCTTGAAGAAAGTAACAAGACACCTGCTAGCAGA  200

seq1  AGCTGGCTTGTAAAACACCCAAGGGCCGCTGGGTGCTGGGATGGAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTGTAAAACACCCAAGGGCCGCTGGGTGCTGGGATGGAATTCT  250

seq1  CTTACTAGAGCACTTGCCTTATACACACAAAGCCCAAGGTTAGATCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGAGCACTTGCCTTATACACACAAAGCCCAAGGTTAGATCAGTA  300

seq1  GTTCCGTAAACAAACAAAACTAAGAACAAAGCAGGATAGCCAGTGCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGTAAACAAACAAAACTAAGAACAAAGCAGGATAGCCAGTGCCAAC  350

seq1  GTCACAGACAGAAACAGGAAGATCAGAAGGTCAAGGTGGCTCTTAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACAGAAACAGGAAGATCAGAAGGTCAAGGTGGCTCTTAGCTAC  400

seq1  ACTGTGAGTTCAAGGCCAACCTGGGTTATATGAGACAGAGCCAAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTTCAAGGCCAACCTGGGTTATATGAGACAGAGCCAAAAAGAG  450

seq1  ACAATGAGAGGAGGAGGAGGGAGGGAAAAATAAAGAGGTGG  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGAGGAGGAGGAGGGAGGGAAAAATAAAGAGGTGG  491

seq1: chr2_11633722_11634906
seq2: B6Ng01-106B08.g_68_1240 (reverse)

seq1  TGGATGAAGTCTGGGATGGCAACGGGAAGAAGGATTGCAGAGAG-GCCAT  49
      ||||||| ||||||||||||| ||  ||||| |||||||||| | | |||
seq2  TGGATGAGGTCTGGGATGGCACCGAAAAGAA-GATTGCAGAGGGAGTCAT  49

seq1  GCTGAGGGCAGGGGAGAAGATGAAGGAGCTACAGCAGACTGTGGTC-ATG  98
       |||||| ||  |||||||||| || ||||||||||| || ||  | |||
seq2  -CTGAGGCCA--GGAGAAGATG-AGAAGCTACAGCAGGCT-TGTACAATG  94

seq1  GGCAGACTCTAGGTCCCATTCCCTTCTCTTTCTCTTAGCTCTTTGGCTTC  148
      ||||||||| | ||||   ||||||||||||||| ||||||  |||| ||
seq2  GGCAGACTC-AAGTCC--ATCCCTTCTCTTTCTC-TAGCTC-ATGGC-TC  138

seq1  CATC-ATTCGCTCATTTCTTTTTAAGATTTATGTGTCTCATATTTTATTT  197
      |||| || |||||||||| |||||||| |||||||||||||| |||||||
seq2  CATCAATCCGCTCATTTCATTTTAAGA-TTATGTGTCTCATA-TTTATTT  186

seq1  GTGTGTCGATAGATGT-CTGTGTGAGTGTCTGCCGTGTGCTATGCGCATA  246
      ||| |||||||||||| ||||| ||||||||||||||||||||| |||||
seq2  GTGGGTCGATAGATGTCCTGTGGGAGTGTCTGCCGTGTGCTATGGGCATA  236

seq1  CTCGA-GGCAGACAGAAGACGGTATTAGGTCTTCTGAAGCTGGAGTTACA  295
       |||| ||||||||| |||||||| |||||||||||||||||||||||||
seq2  TTCGAGGGCAGACAG-AGACGGTAATAGGTCTTCTGAAGCTGGAGTTACA  285

seq1  GGTAGTCGGGTGCTCTGGAAAAACAGGATTTGCTCTGAAGCACTGAGCTA  345
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTAGTCGGGTGCTCTGG-AAAACAGGATTTGCTCTGAAGCACTGAGCTA  334

seq1  TCTTTTCAGCTCTAACTTTAAATATATATATATTCCCATCCTATCAGGCA  395
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TC-TTTCAGCTCTAACTTTAAATATATATATATTCCCATCCAATCAGGCA  383

seq1  GGGTTCACAAGGTTCTGACAACGAGAGGAGCTCCTCTCCTTGCCAGCAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACAAGGTTCTGACAACGAGAGGAGCTCCTCTCCTTGCCAGCAAT  433

seq1  GAGCGTGCTCTGCAGAGCCACAGTGATTGAGTCCTCTCACAGGACCATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGCTCTGCAGAGCCACAGTGATTGAGTCCTCTCACAGGACCATTC  483

seq1  TGGAAATGTATCGACTCCTGTTGACCAGACTAGACTGCTTGCTCTGCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTATCGACTCCTGTTGACCAGACTAGACTGCTTGCTCTGCTTT  533

seq1  TCCCTTGAATGTCTGGCTAATTCTTGCTCATCCTTGAACTTTTACACAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGAATGTCTGGCTAATTCTTGCTCATCCTTGAACTTTTACACAAT  583

seq1  GGCACTTTTTTCAGGCATTGCAGTTAAACCACGTCTTATCACTCCCAGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTTTTCAGGCATTGCAGTTAAACCACGTCTTATCACTCCCAGCT  633

seq1  GTGTCCATCTGCTTCATCTTCTACACCCCGCACACCATGTTCCTGGAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATCTGCTTCATCTTCTACACCCCGCACACCATGTTCCTGGAGCA  683

seq1  GGAGTGCTCCAGATGTGTGGAAAGACCAAGTAGAATTTACAGCAGTGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCTCCAGATGTGTGGAAAGACCAAGTAGAATTTACAGCAGTGTCA  733

seq1  GCCATCAGGAAAAGGATGTTCTGTGCAGAATGTGTTGCCTCTGCAATTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGGAAAAGGATGTTCTGTGCAGAATGTGTTGCCTCTGCAATTGC  783

seq1  AAGGCGGGAAATGCCCTGTGTGAGGAAGGGACTCTTAGGCTCCTTTACCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGGAAATGCCCTGTGTGAGGAAGGGACTCTTAGGCTCCTTTACCT  833

seq1  CCAAGGTTTCAAAATGACCCATTGGCAGGGCCTGCCAGTTCTCTGAGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTTCAAAATGACCCATTGGCAGGGCCTGCCAGTTCTCTGAGGGA  883

seq1  AGCAAAATAAACTGTGATCTCATAAGATCCCTGCTGGCCCAAGAAAAGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAAACTGTGATCTCATAAGATCCCTGCTGGCCCAAGAAAAGAC  933

seq1  AATAACAATAACGTTAAGAAGCAGGCTTGGGACAAACAAGAGAAAGGGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATAACGTTAAGAAGCAGGCTTGGGACAAACAAGAGAAAGGGTA  983

seq1  GTTCTTTTAGATGTCTTCCTCTAGCCTTTTCCCTGAAGAGCTCACAAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTAGATGTCTTCCTCTAGCCTTTTCCCTGAAGAGCTCACAAGTC  1033

seq1  TCTGGAGATACTGATCGATAGCTGGAAAATGTCCAGCCACAAATAATGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATACTGATCGATAGCTGGAAAATGTCCAGCCACAAATAATGTA  1083

seq1  ATAGCTCACTCACAGGTCCAAAGGTCCAGGCTTTCTCAGACAGAGGGAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCACTCACAGGTCCAAAGGTCCAGGCTTTCTCAGACAGAGGGAAC  1133

seq1  ATTTTCTAAAAGGTCAGGCCTAGTATGTTTCACTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAAAAGGTCAGGCCTAGTATGTTTCACTGAATTC  1173