BAC Information

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BAC

Clone NameB6Ng01-107H09
Chromosome2 (Build37)14 (Build37)
Map Location 142,776,671 - 142,777,69897,743,402 - 97,744,497
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H09.bB6Ng01-107H09.g
ACCDH914925DH914926
length9881,077
definitionDH914925|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H09, 5' end.DH914926|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,671 - 142,777,698)(97,743,402 - 97,744,497)
sequence
gaattctttgtttagctcagtaccccatttttaaatggggttatttgatt
ttctggagtccaccttcttgatttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttactgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctccatcttacatcacaagccattgctgat
ctattcgggaatttttcccctgtgcccatatctttgaggctttttccact
ttctcctctataaatttcagtgtctctggttttatattgagttccttcat
ccacttagatttgaccttactacaaggagataggaatggatcaattcaca
ttcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgactttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttttctgtcgctataccaataccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcttggtgattccaccagaggttcattt
atccttgagaagaatttttgctatcctaggttttttgttattccagatga
atttgcagattgctctttctaattcgttgaagaattgagttggaattttg
atggggattgaattgaatctgtagattgcttttggcaagagagccatttt
tacaatgttgatcctgccaatccaggagcatgggagatctttccatcttc
tgagatattctttaatttctttcttcagagacttgaagttcttatcatac
agatctttcacttccttagattcatgccagatattttatattatttgtga
ctattgagaaggtgttattccctaatttctttctcagc
gaattccatgaagtaattttgagttgtgtgttctgtaaaatgtgctttcc
ttggaagatggaatgtttcactctagaagaaattgctaaacaatatattt
taaatagtgagtgagttttttcttgcaggtggactataatgcaaattcac
acacatattactaaatatttatagccaaaatatttctttatttaatcact
gatttaaagttaagctagttttctattttgtgtctagttttgtatgaatt
aataagtgtattaaataaactacagaaaaaaatgactaatataatttcca
ctttcacttctggtaaacactgaaaatctctgatgagaaaatagaagata
aatatagaataaagccataagcatgctatgcaaattatgaataataaatt
ggacacattgatttgattcttagaaggtgtagtagattgaaagaagaagt
ctgtcaactaagtttttgacaggtgtcaaatacagagtactattttttta
atgagattaagtaattggcagagtatgctctgtgcacttttgatattagc
tacaccacagtttacttttattgatatgaagatgacttaagcaatgtaca
tgttctgaaaaacaagtgacattaagaactgatttatttggttgtagtca
agatgttttaacgttcaagttttatagcaattcagcttatatttagaaga
gtattagacatttgcatttcttattataattcagttgctattctcatata
agactgtggagaaattctatacacctcaagtgccttaggtcaaaagaatc
accttccatagacaagtgggtaatggtaattgaactttttgagttatcac
aaacaaacaacaaacaaacaaacataataccagcaacaaactcgaacaaa
caaccaaataagccaaaaaatcatgatattcggaatttcagagtaaggca
tgttgatgagaccatggagggtttggttgagaaccactgagttgatgtga
ttatattgtgttgtacatatgtgtgattctagactaagagcaggtgcaaa
tgatcctgtacttcaaactaatacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776671_142777698
seq2: B6Ng01-107H09.b_40_606 (reverse)

seq1  TAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGCGACAGAAAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGA  50

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  100

seq1  CAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  150
      ||| ||||||||| ||||||||||||||| ||||||||||||||||||| 
seq2  CAGTGGAAGAAAGTCAGCATTTTCAACAAATGGTGCTGGCACAACTGGTG  150

seq1  GTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTA  200
      ||||||||||||||||||| |||| ||||||| | |||||||||||| ||
seq2  GTTATCATGTAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTAGTA  200

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  250
      ||||||||||||||||||| ||||||||  | ||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATGAAGGAACTCAATATAAAACCAGAGACACTG  250

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  300
      ||| |||||||||||||||| || ||||||||  ||||||||||||||||
seq2  AAATTTATAGAGGAGAAAGT-GGAAAAAGCCTCAAAGATATGGGCACAGG  299

seq1  GGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  350
      ||| ||||||| ||| ||| ||||||||||||||| |||||||| |||||
seq2  GGAAAAATTCCCGAATAGATCAGCAATGGCTTGTGATGTAAGATGGAGAA  349

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  400
      |||||||||||||||| |||||||| ||||| ||||||||||||||||||
seq2  TTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  399

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  450
      ||| ||| |||||||||||| |||||||||||||||||||||||||||||
seq2  ACCATCAGTAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTAC  449

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  500
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAAATCA  499

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  550
      |||||||||||| |||||||||||||||||||||| ||||||||||   |
seq2  AGAAGGTGGACTCCAGAAAATCAAATAACCCCATTTAAAAATGGGG--TA  547

seq1  CAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  600
      |  | | |        || |||||    |||                   
seq2  CTGAGCTA--------AACAAAGA----ATTC------------------  567

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  650
                                                        
seq2  --------------------------------------------------  567

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  700
                                                        
seq2  --------------------------------------------------  567

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  750
                                                        
seq2  --------------------------------------------------  567

seq1  TGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTA  800
                                                        
seq2  --------------------------------------------------  567

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  850
                                                        
seq2  --------------------------------------------------  567

seq1  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  900
                                                        
seq2  --------------------------------------------------  567

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  950
                                                        
seq2  --------------------------------------------------  567

seq1  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAA  1000
                                                        
seq2  --------------------------------------------------  567

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  1028
                                  
seq2  ----------------------------  567

seq1: chr14_97743402_97744497
seq2: B6Ng01-107H09.g_66_1142 (reverse)

seq1  TTTGTATTAAGTTTGAAGTAACAGGAATTCATTTTGCACCTGCTCTTTAG  50
      |||||||| |||||||||| ||||||  ||| ||||||||||||| ||||
seq2  TTTGTATT-AGTTTGAAGT-ACAGGA--TCA-TTTGCACCTGCTC-TTAG  44

seq1  TCTTAAGAATTCCACACATATGTACAACACAATATAATCACATTCAACTC  100
      |||  |||||  |||||||||||||||||||||||||||||| |||||| 
seq2  TCT--AGAAT--CACACATATGTACAACACAATATAATCACA-TCAACT-  88

seq1  CAGTGTTCCTCAACCAAACCCTCCATGGTCTCATCAACATGCCTTACTCT  150
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCTCAACCAAACCCTCCATGGTCTCATCAACATGCCTTACTCT  138

seq1  GAAATTCCGAATATCATGATTTTTTTGGCTTTTATTTGGTTGTTTGTTCG  200
      ||||||||||||||||||| |||||||||  |||||||||||||||||||
seq2  GAAATTCCGAATATCATGA-TTTTTTGGC--TTATTTGGTTGTTTGTTCG  185

seq1  AGTTTTGTTGCTGGTATTATTGTTTTGTTTGTTTGTTTGTTTGTTTGTGA  250
      || |||||||||||||||||   |||||||||||| ||||||||||||||
seq2  AG-TTTGTTGCTGGTATTAT--GTTTGTTTGTTTG-TTGTTTGTTTGTGA  231

seq1  TAACTCAAAAAGTTCAATTACCATTACCCACTTGTCTATGGAAGGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAAAAGTTCAATTACCATTACCCACTTGTCTATGGAAGGTGATT  281

seq1  CTTTTGACCTAAGGCACTTGAGGTGTATAGAATTTCTCCACAGTCTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACCTAAGGCACTTGAGGTGTATAGAATTTCTCCACAGTCTTATA  331

seq1  TGAGAATAGCAACTGAATTATAATAAGAAATGCAAATGTCTAATACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAGCAACTGAATTATAATAAGAAATGCAAATGTCTAATACTCTT  381

seq1  CTAAATATAAGCTGAATTGCTATAAAACTTGAACGTTAAAACATCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATAAGCTGAATTGCTATAAAACTTGAACGTTAAAACATCTTGAC  431

seq1  TACAACCAAATAAATCAGTTCTTAATGTCACTTGTTTTTCAGAACATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCAAATAAATCAGTTCTTAATGTCACTTGTTTTTCAGAACATGTA  481

seq1  CATTGCTTAAGTCATCTTCATATCAATAAAAGTAAACTGTGGTGTAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTAAGTCATCTTCATATCAATAAAAGTAAACTGTGGTGTAGCTA  531

seq1  ATATCAAAAGTGCACAGAGCATACTCTGCCAATTACTTAATCTCATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAGTGCACAGAGCATACTCTGCCAATTACTTAATCTCATTAAA  581

seq1  AAAATAGTACTCTGTATTTGACACCTGTCAAAAACTTAGTTGACAGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTACTCTGTATTTGACACCTGTCAAAAACTTAGTTGACAGACTT  631

seq1  CTTCTTTCAATCTACTACACCTTCTAAGAATCAAATCAATGTGTCCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCAATCTACTACACCTTCTAAGAATCAAATCAATGTGTCCAATT  681

seq1  TATTATTCATAATTTGCATAGCATGCTTATGGCTTTATTCTATATTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCATAATTTGCATAGCATGCTTATGGCTTTATTCTATATTTATC  731

seq1  TTCTATTTTCTCATCAGAGATTTTCAGTGTTTACCAGAAGTGAAAGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTCTCATCAGAGATTTTCAGTGTTTACCAGAAGTGAAAGTGGA  781

seq1  AATTATATTAGTCATTTTTTTCTGTAGTTTATTTAATACACTTATTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTAGTCATTTTTTTCTGTAGTTTATTTAATACACTTATTAATT  831

seq1  CATACAAAACTAGACACAAAATAGAAAACTAGCTTAACTTTAAATCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAACTAGACACAAAATAGAAAACTAGCTTAACTTTAAATCAGTG  881

seq1  ATTAAATAAAGAAATATTTTGGCTATAAATATTTAGTAATATGTGTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAAGAAATATTTTGGCTATAAATATTTAGTAATATGTGTGTGA  931

seq1  ATTTGCATTATAGTCCACCTGCAAGAAAAAACTCACTCACTATTTAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTATAGTCCACCTGCAAGAAAAAACTCACTCACTATTTAAAAT  981

seq1  ATATTGTTTAGCAATTTCTTCTAGAGTGAAACATTCCATCTTCCAAGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTTAGCAATTTCTTCTAGAGTGAAACATTCCATCTTCCAAGGAA  1031

seq1  AGCACATTTTACAGAACACACAACTCAAAATTACTTCATGGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTTACAGAACACACAACTCAAAATTACTTCATGGAATTC  1077