BAC Information

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BAC

Clone NameB6Ng01-108B05
Chromosome2 (Build37)
Map Location 101,854,646 - 102,047,028
singlet/doubletdoublet
Overlap geneLdlrad3, LOC674202
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108B05.bB6Ng01-108B05.g
ACCDH915354DH915355
length1,1681,118
definitionDH915354|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B05, 5' end.DH915355|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,854,646 - 101,855,837)(102,045,899 - 102,047,028)
sequence
gaattccatcagatatgccccccccccccgcccccgacctcccagagagg
tggcagaatagaatgtcatggaaacaggcctggggttcctactgcccagc
tccaccatgtgctggccatgtggccttgggcaggagaattgcttcttgga
gcctgaatttcctcatctataaaatggaaggaacaccaccctcctatgag
gactgggatcatctgagtagggcttggcaccctgcctggcgcctttgtct
acctttccttgtgactggcggcccacattgcagagtatggcagccctggc
cattaacatggaagaagtgctcaaggcacaatggctgctattccggtcca
aggtgtgttctgtgagcagaagagcctctgagagcaggatgtgtcagagc
tggaagagctcagaatcactcccggatcccattatcatgtctgtgtaaag
gagccatttgagtgggagtttgaaatggcaagctttctgccagactgagc
atggggaaggcattctagaaaggacggagagaatgacagggagaggggaa
accaggaagtgtgcacaggaaacagactggccaaaccatacacctgtgaa
tggtcaggaagaacctcgctactggctgccggcagagagactgcctgtgg
ggcgtgtgcgcatgcgcgtgtttgtttgcagctgcatgtgagcatacatg
actgtggaggccagaggccaatcctgggtgtcattcttcacgtgccaccc
accttttctcgagacgttgtctgtcactggcctggagctagcagactaga
taggatggcccaagagatctgaatctctccacctccccagtgcaaggctc
acaaatggtgagccaatgtggctgccggaaactgaacactttctcatcct
cacaggcacgcactttaccaagcagctgtccctccaactcccatttttgt
ttctgagcaaaaagagtttgctctgagagaggctgggagacaccgggtag
ggaggcttcataagatacactgagagcgggaggaagagagaagtaacgag
aagcgcgaccctcagctccaagtgctcaggtggaacagaagagcatagaa
aactcgtcaatacattgccacctggctctgcctgtggtgtcgaggtgaca
attcttaccatccggaac
gaattcaccttgaaccttcagaacattgctggctccctcattaagttaag
ttgaataaactcttgacatcttgtacattttgcatttttatgggttataa
ttttactttttaaaaataccagccgtgagcaccaacttttatatgaatat
ttatctcataactttttcttacaaagagtggatttgttgcttacttctcg
gtgtgcacacctaaagggtttttcccatacattggtacaagtttagaatt
gatgaggatgctggctttcattggtctccttgggagcttgatgctaacac
ccagtaatacaagcactgtggttagaggaccttaaacagtagccctggct
caacatccttagttaattaccttgttacaaacaaacagcatcaaaagtta
ctttctcttgaaacgcttgcatttcaggattttataactagagtgagtat
aggggtctcctgttcttggtattcaaaataatgccctttgaggggtgcta
accaggcctttgtaaaaacaaatgtcaatacaattaggtattgttaacct
gacatactctgggctttagtcaatgcctctgtctccttcccagccacaga
gtgacaagggaaggaagaggggacattaaaggggttcagaatgtctctgt
ctctatcctcagccaagccctttgaagacagggccaggtttttacaatgg
aagacagctcgtgtgcagccagctcatgatcgctttcctaagcaaagcaa
aatcttgctccttccagagaagccaatgaaagcttaataccagttaaata
atacataatagtaagatcgttatcctgtcttctcccagtcggctaacttc
gtaatgtgtaaatgcttatgtggtgtgtgaaatcaaaggacataaacggc
actaaaggggggaaggaacgaatctgatcagaaagcctgcagacgcagac
cacagaaatcactttcccgctcacagcaccgccccaccgagccaggctga
cgactgaacaagagcctttcctttggagcttagcatcgttctgatcctac
acgggtaccctcacttcccacccctccagtctccttcccttcctctcaga
tctccttctgcattccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101854646_101855837
seq2: B6Ng01-108B05.b_47_1214

seq1  GAATTCCATCAGATATGCCCCCCCCCCCCGCCCCCGACCTCCCAGAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGATATGCCCCCCCCCCCCGCCCCCGACCTCCCAGAGAGG  50

seq1  TGGCAGAATAGAATGTCATGGAAACAGGCCTGGGGTTCCTACTGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATAGAATGTCATGGAAACAGGCCTGGGGTTCCTACTGCCCAGC  100

seq1  TCCACCATGTGCTGGCCATGTGGCCTTGGGCAGGAGAATTGCTTCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGTGCTGGCCATGTGGCCTTGGGCAGGAGAATTGCTTCTTGGA  150

seq1  GCCTGAATTTCCTCATCTATAAAATGGAAGGAACACCACCCTCCTATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATTTCCTCATCTATAAAATGGAAGGAACACCACCCTCCTATGAG  200

seq1  GACTGGGATCATCTGAGTAGGGCTTGGCACCCTGCCTGGCGCCTTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGATCATCTGAGTAGGGCTTGGCACCCTGCCTGGCGCCTTTGTCT  250

seq1  ACCTTTCCTTGTGACTGGCGGCCCACATTGCAGAGTATGGCAGCCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTTGTGACTGGCGGCCCACATTGCAGAGTATGGCAGCCCTGGC  300

seq1  CATTAACATGGAAGAAGTGCTCAAGGCACAATGGCTGCTATTCCGGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATGGAAGAAGTGCTCAAGGCACAATGGCTGCTATTCCGGTCCA  350

seq1  AGGTGTGTTCTGTGAGCAGAAGAGCCTCTGAGAGCAGGATGTGTCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTTCTGTGAGCAGAAGAGCCTCTGAGAGCAGGATGTGTCAGAGC  400

seq1  TGGAAGAGCTCAGAATCACTCCCGGATCCCATTATCATGTCTGTGTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCTCAGAATCACTCCCGGATCCCATTATCATGTCTGTGTAAAG  450

seq1  GAGCCATTTGAGTGGGAGTTTGAAATGGCAAGCTTTCTGCCAGACTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTTGAGTGGGAGTTTGAAATGGCAAGCTTTCTGCCAGACTGAGC  500

seq1  ATGGGGAAGGCATTCTAGAAAGGACGGAGAGAATGACAGGGAGAGGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAGGCATTCTAGAAAGGACGGAGAGAATGACAGGGAGAGGGGAA  550

seq1  ACCAGGAAGTGTGCACAGGAAACAGACTGGCCAAACCATACACCTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGTGTGCACAGGAAACAGACTGGCCAAACCATACACCTGTGAA  600

seq1  TGGTCAGGAAGAACCTCGCTACTGGCTGCCGGCAGAGAGACTGCCTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGAAGAACCTCGCTACTGGCTGCCGGCAGAGAGACTGCCTGTGG  650

seq1  GGCGTGTGCGCATGCGCGTGTTTGTTTGCAGCTGCATGTGAGCATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGCGCATGCGCGTGTTTGTTTGCAGCTGCATGTGAGCATACATG  700

seq1  ACTGTGGAGGCCAGAGGCCAATCCTGGGTGTCATTCTTCACGTGCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGGCCAGAGGCCAATCCTGGGTGTCATTCTTCACGTGCCACCC  750

seq1  ACCTTTTCTCGAGACGTTGTCTGTCACTGGCCTGGAGCTAGCAGACTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTCGAGACGTTGTCTGTCACTGGCCTGGAGCTAGCAGACTAGA  800

seq1  TAGGATGGCCCAAGAGATCTGAATCTCTCCACCTCCCCAGTGCAAGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGCCCAAGAGATCTGAATCTCTCCACCTCCCCAGTGCAAGGCTC  850

seq1  ACAAATGGTGAGCCAATGTGGCTGCCGGAAACTGAACACTTTCTCATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGTGAGCCAATGTGGCTGCCGGAAACTGAACACTTTCTCATCCT  900

seq1  CACAGGCACGCACTTTACCAAGCAGGCTGTCCCTCCAACTCCCATTTTTG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACAGGCACGCACTTTACCAAGCA-GCTGTCCCTCCAACTCCCATTTTTG  949

seq1  TTTCTGAGCAAAAAGAGTTTGCTCTGAAGAGAGGCTGGGAGACACCGGGT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCTGAGCAAAAAGAGTTTGCTCTG-AGAGAGGCTGGGAGACACCGGGT  998

seq1  AGGGAGGCCTCATTAAGATACCACTGAGGAGGCGGGGAAGGAAGAGAGAC  1050
      |||||||| ||| ||||||| |||||||   |||||  ||||||||||| 
seq2  AGGGAGGCTTCA-TAAGATA-CACTGAG--AGCGGG--AGGAAGAGAGA-  1041

seq1  AGTAACGAG-AGCGCAGACACTCAGCTTCCCAGAGTGCTTCAGGTGGAAC  1099
      ||||||||| ||||| ||| |||||||  ||| ||||| |||||||||| 
seq2  AGTAACGAGAAGCGC-GACCCTCAGCT--CCA-AGTGC-TCAGGTGGAA-  1085

seq1  CAGTAGAGCATTAGAGACTCGTCCATTAACAAATGGCCACCCTGGCTCTG  1149
      ||| |||||||   | |||||||    || | || |||| ||||||||||
seq2  CAGAAGAGCATAGAAAACTCGTC----AATACATTGCCA-CCTGGCTCTG  1130

seq1  TGCTGTGTGGTGTCAGAGGTAGAC-ATTCTTACCATCGGGGAAC  1192
           ||||||||| ||||| ||| ||||||||||||  |||||
seq2  ---CCTGTGGTGTC-GAGGT-GACAATTCTTACCATC-CGGAAC  1168

seq1: chr2_102045899_102047028
seq2: B6Ng01-108B05.g_67_1184 (reverse)

seq1  GCGGAATGCAAGAGGAGATCTGAGAGGGAGGG-AGGAGACATGGGTGGGT  49
      ||||||||||  ||||||||||||||| |||| ||||||| |||  ||||
seq2  GCGGAATGCAGAAGGAGATCTGAGAGGAAGGGAAGGAGAC-TGGAGGGGT  49

seq1  GGGAGGTGAGGGTACCCGGTGTTAGGATCAGAACGATGCCTTTAAGCTCC  99
      |||| |||||||||||| ||| |||||||||||||||||   ||||||||
seq2  GGGAAGTGAGGGTACCC-GTG-TAGGATCAGAACGATGC---TAAGCTCC  94

seq1  AAAGGGAAAGGCTCTTGTTCAGTCTGTCAGCCTGGCTCGGGTGGGGCGGT  149
      ||| |||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AAA-GGAAAGGCTCTTGTTCAGTC-GTCAGCCTGGCTC-GGTGGGGCGGT  141

seq1  GCTGGTGGAGCGGGGAAAGTGATTTCTGTGGTCTGCGTTCTGCAGGCTTT  199
      ||||   |||| ||||||||||||||||||||||||| ||||||||||||
seq2  GCTG--TGAGC-GGGAAAGTGATTTCTGTGGTCTGCG-TCTGCAGGCTTT  187

seq1  CTGATCAGATTCGTTCCTTCCCCCCTTTAGTGCCGTTTATGTCCTTTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGATTCGTTCCTTCCCCCCTTTAGTGCCGTTTATGTCCTTTGAT  237

seq1  TTCACACACCACATAAGCATTTACACATTACGAAGTTAGCCGACTGGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACACCACATAAGCATTTACACATTACGAAGTTAGCCGACTGGGAG  287

seq1  AAGACAGGATAACGATCTTACTATTATGTATTATTTAACTGGTATTAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGATAACGATCTTACTATTATGTATTATTTAACTGGTATTAAGC  337

seq1  TTTCATTGGCTTCTCTGGAAGGAGCAAGATTTTGCTTTGCTTAGGAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGGCTTCTCTGGAAGGAGCAAGATTTTGCTTTGCTTAGGAAAGC  387

seq1  GATCATGAGCTGGCTGCACACGAGCTGTCTTCCATTGTAAAAACCTGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAGCTGGCTGCACACGAGCTGTCTTCCATTGTAAAAACCTGGCC  437

seq1  CTGTCTTCAAAGGGCTTGGCTGAGGATAGAGACAGAGACATTCTGAACCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAAAGGGCTTGGCTGAGGATAGAGACAGAGACATTCTGAACCC  487

seq1  CTTTAATGTCCCCTCTTCCTTCCCTTGTCACTCTGTGGCTGGGAAGGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGTCCCCTCTTCCTTCCCTTGTCACTCTGTGGCTGGGAAGGAGA  537

seq1  CAGAGGCATTGACTAAAGCCCAGAGTATGTCAGGTTAACAATACCTAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCATTGACTAAAGCCCAGAGTATGTCAGGTTAACAATACCTAATT  587

seq1  GTATTGACATTTGTTTTTACAAAGGCCTGGTTAGCACCCCTCAAAGGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGACATTTGTTTTTACAAAGGCCTGGTTAGCACCCCTCAAAGGGCA  637

seq1  TTATTTTGAATACCAAGAACAGGAGACCCCTATACTCACTCTAGTTATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAATACCAAGAACAGGAGACCCCTATACTCACTCTAGTTATAA  687

seq1  AATCCTGAAATGCAAGCGTTTCAAGAGAAAGTAACTTTTGATGCTGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAAATGCAAGCGTTTCAAGAGAAAGTAACTTTTGATGCTGTTTG  737

seq1  TTTGTAACAAGGTAATTAACTAAGGATGTTGAGCCAGGGCTACTGTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACAAGGTAATTAACTAAGGATGTTGAGCCAGGGCTACTGTTTAA  787

seq1  GGTCCTCTAACCACAGTGCTTGTATTACTGGGTGTTAGCATCAAGCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTAACCACAGTGCTTGTATTACTGGGTGTTAGCATCAAGCTCCC  837

seq1  AAGGAGACCAATGAAAGCCAGCATCCTCATCAATTCTAAACTTGTACCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACCAATGAAAGCCAGCATCCTCATCAATTCTAAACTTGTACCAA  887

seq1  TGTATGGGAAAAACCCTTTAGGTGTGCACACCGAGAAGTAAGCAACAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGAAAAACCCTTTAGGTGTGCACACCGAGAAGTAAGCAACAAAT  937

seq1  CCACTCTTTGTAAGAAAAAGTTATGAGATAAATATTCATATAAAAGTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTTGTAAGAAAAAGTTATGAGATAAATATTCATATAAAAGTTGG  987

seq1  TGCTCACGGCTGGTATTTTTAAAAAGTAAAATTATAACCCATAAAAATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACGGCTGGTATTTTTAAAAAGTAAAATTATAACCCATAAAAATGC  1037

seq1  AAAATGTACAAGATGTCAAGAGTTTATTCAACTTAACTTAATGAGGGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTACAAGATGTCAAGAGTTTATTCAACTTAACTTAATGAGGGAGC  1087

seq1  CAGCAATGTTCTGAAGGTTCAAGGTGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  CAGCAATGTTCTGAAGGTTCAAGGTGAATTC  1118