BAC Information

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BAC

Clone NameB6Ng01-108D12
Chromosome2 (Build37)1 (Build37)
Map Location 64,963,286 - 64,963,784190,254,101 - 190,255,270
singlet/doubletsingletsinglet
Overlap geneCobll1
Upstream geneLOC620544, LOC667291, Grb14
Downstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108D12.bB6Ng01-108D12.g
ACCDH915459DH915460
length1761,148
definitionDH915459|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D12, 5' end.DH915460|Mus musculus domesticus DNA, BAC clone: B6Ng01-108D12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,963,286 - 64,963,784)(190,254,101 - 190,255,270)
sequence
gaattcttataattttgtttgtgaacctagcctttaatggctgagccatc
tctccagcccaaggtttattttatttatataactgtagctgtcttcagac
acaccagaagagggcatcagatcccattacagatggttgtgagccaccat
gtggtttctgggaattgaactcagga
gaattcagtatgctgtgaaaataataactattaaattataatattaataa
aacattagaaaatgttcataaaactgatcatagaaggacatgaaatgcat
aataaataacaaatctatttgttatagcaaattacatggaaatatgttgg
tgaactagggtgaatgatcatttttgtttaaatagaaacatcatgatttt
aacagtaaatgttgatgttctggggaaaaaaaaatctccctgtctggaaa
aaactggaattgttttcttcctttgttagtgactttattccaacaaactg
ctgccagtgttttgctaccagactggtcacccaagaaattctaattctct
agtcaaggagaagctcacagattccctttagtgccgttaacagacttgcc
ttatctaattcttcctactctgcccatgtcttttaaatgacttctagtgg
cagaaagcattgaggtcctcctcccaggtcccagtgactcacatgctggc
aatgggccagaatggacttacttttgctgcagcctaatagattgttgacg
tccaagtggcttgcaccaggaacacaagtgtcacattttgagccagtgac
aaactctttgcagaaacactggcctgtgactgcatcacaagttccattcg
aggctcctgctacatgacagtgacaaggcctgcatctgaagacacatatg
gagagtcagaagagtgctttagttaataatttcatatgacatgtcatacc
tatcaataacattgtggttgaacacagcttgcttttaccaacgcattgaa
aaggatgcttgaaccacacaagcacacagtaaagtgatacagaaaagatc
attatcaaaatgttgctcacacttagatccatgtgaggattttggtgttg
atactcatagataaatggcctaagatgaggcctaggagagggctcagttg
gtaaagtatctgacgagaggcagcatggaacccgagcttggatcccagtg
cccatgtaaaatcagactaggtggcagtgctgtttagttattagcattca
cttgggacgaaaggttcttgggttgtcacaggcgtctaaaagattggtga
ctcagtcaagtaacctgatccagaatgatgaggagagtggatagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64963286_64963784
seq2: B6Ng01-108D12.b_61_211

seq1  CCTAGCCTTTAACGGCCGAGCCATCTCTCCAGCCCAAAAGGCTTGTTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAACATAGCATTAACAGATCAAGTAGACACCAGGATTTTCCCTGGAGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAGAAGATGCCAGAGGTTATAAATGCAAGCACGGAACATATCACCTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAGTTTTAAAAAATATATATGGTCAAAATATGCATTTAATTCCCCATA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CATGCAACCAATGACTGTGATGAAGTAAAGCAAGACAAAACGTATGTATC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTATTGGCTGAGGATGGAAGCTTCTTAAAACTGACATCTAAAGACATG  300
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGAAGTATCCATGATCTTTTTCTATCAACCTTGCCAGTAA--------  342
                                    ||| |||  |||        
seq2  ------------------------------CCTAGCCTTTAATGGCTGAG  20

seq1  CTAT-TCTACTGAGTACATAGTTTTTTCTTAAAGATTTATTTATTTCAC-  390
      | || ||| |  ||  ||  |||| |         ||||||||| | || 
seq2  CCATCTCTCC--AGCCCAAGGTTTAT---------TTTATTTATATAACT  59

seq1  GTATGTGAGTACACAATCTTCACACACACCAGAAGAGGGCATCAGATCTC  440
      |||  ||         |||||| ||||||||||||||||||||||||| |
seq2  GTAGCTG---------TCTTCAGACACACCAGAAGAGGGCATCAGATCCC  100

seq1  ATTACAAGCCACAAGATGGTTACAAGCCACCATGTGGTGGCTGGGAATTA  490
      |||||        ||||||||   ||||||||||||||  ||||||||| 
seq2  ATTAC--------AGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATTG  142

seq1  AACTCAGGA  499
      |||||||||
seq2  AACTCAGGA  151

seq1: chr1_190254101_190255270
seq2: B6Ng01-108D12.g_70_1217 (reverse)

seq1  CCTACT---CACTCTCCTACTTACATTCTGAGATCAGGTCTCACATTGAA  47
      ||||||   |||||||||  |  ||||||| ||||||||  |   |||| 
seq2  CCTACTATCCACTCTCCTCAT--CATTCTG-GATCAGGTTAC---TTGA-  43

seq1  ACTTGAGTTCACCAATTCTTCTAGACTGCCTGTGTGACAAACCCAAGGAC  97
         |||| ||||||| |||| ||||| |||  |||||| |||||||| ||
seq2  --CTGAG-TCACCAA-TCTTTTAGAC-GCC--TGTGAC-AACCCAAGAAC  85

seq1  CTTTCTGTCCCCATAGTTGAATGCTAATAACATAACCAGCACTTGCCACC  147
      ||||| |||||   |  |||||||||||||| ||| |||||| |||||||
seq2  CTTTC-GTCCC---AAGTGAATGCTAATAAC-TAAACAGCAC-TGCCACC  129

seq1  TAGTCTGATTTTTACATGGGCACTGGGGATTCAAGCTCGGGTTCCCATGC  197
      |||||||| ||||||||||||||| ||||| |||||||||||| ||||||
seq2  TAGTCTGA-TTTTACATGGGCACT-GGGATCCAAGCTCGGGTT-CCATGC  176

seq1  TGGCTTCTCGTCAGATACTTTACCAACTGAGCCCTCTCCCTAGGCCTCAT  247
      | || |||||||||||||||||||||||||||||||| ||||||||||||
seq2  T-GCCTCTCGTCAGATACTTTACCAACTGAGCCCTCT-CCTAGGCCTCAT  224

seq1  CTTAGGCCATTAATCTATGAGTATCAACAACAAAATCCTCACATGGATCT  297
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CTTAGGCCATTTATCTATGAGTATCAACACCAAAATCCTCACATGGATCT  274

seq1  AAGTGTGAGCAACATTTTGATAATGATCTTTTCTGTATCACTTTACTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGCAACATTTTGATAATGATCTTTTCTGTATCACTTTACTGTG  324

seq1  TGCTTGTGTGGTTCAAGCATCCTTTTCAATGCGTTGGTAAAAGCAAGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGGTTCAAGCATCCTTTTCAATGCGTTGGTAAAAGCAAGCTG  374

seq1  TGTTCAACCACAATGTTATTGATAGGTATGACATGTCATATG-AATTATT  446
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTCAACCACAATGTTATTGATAGGTATGACATGTCATATGAAATTATT  424

seq1  AACTAAAGCACTCTTCTGACTCTCCATATGTGTCTTCAGATGCAGGCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGCACTCTTCTGACTCTCCATATGTGTCTTCAGATGCAGGCCTT  474

seq1  GTCACTGTCATGTAGCAGGAGCCTCGAATGGAACTTGTGATGCAGTCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTCATGTAGCAGGAGCCTCGAATGGAACTTGTGATGCAGTCACA  524

seq1  GGCCAGTGTTTCTGCAAAGAGTTTGTCACTGGCTCAAAATGTGACACTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGTTTCTGCAAAGAGTTTGTCACTGGCTCAAAATGTGACACTTG  574

seq1  TGTTCCTGGTGCAAGCCACTTGGACGTCAACAATCTATTAGGCTGCAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGTGCAAGCCACTTGGACGTCAACAATCTATTAGGCTGCAGCA  624

seq1  AAAGTAAGTCCATTCTGGCCCATTGCCAGCATGTGAGTCACTGGGACCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTCCATTCTGGCCCATTGCCAGCATGTGAGTCACTGGGACCTG  674

seq1  GGAGGAGGACCTCAATGCTTTCTGCCACTAGAAGTCATTTAAAAGACATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGACCTCAATGCTTTCTGCCACTAGAAGTCATTTAAAAGACATG  724

seq1  GGCAGAGTAGGAAGAATTAGATAAGGCAAGTCTGTTAACGGCACTAAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTAGGAAGAATTAGATAAGGCAAGTCTGTTAACGGCACTAAAGG  774

seq1  GAATCTGTGAGCTTCTCCTTGACTAGAGAATTAGAATTTCTTGGGTGACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGAGCTTCTCCTTGACTAGAGAATTAGAATTTCTTGGGTGACC  824

seq1  AGTCTGGTAGCAAAACACTGGCAGCAGTTTGTTGGAATAAAGTCACTAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTAGCAAAACACTGGCAGCAGTTTGTTGGAATAAAGTCACTAAC  874

seq1  AAAGGAAGAAAACAATTCCAGTTTTTTCCAGACAGGGAGATTTTTTTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAAAACAATTCCAGTTTTTTCCAGACAGGGAGATTTTTTTTTC  924

seq1  CCCAGAACATCAACATTTACTGTTAAAATCATGATGTTTCTATTTAAACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACATCAACATTTACTGTTAAAATCATGATGTTTCTATTTAAACA  974

seq1  AAAATGATCATTCACCCTAGTTCACCAACATATTTCCATGTAATTTGCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCATTCACCCTAGTTCACCAACATATTTCCATGTAATTTGCTA  1024

seq1  TAACAAATAGATTTGTTATTTATTATGCATTTCATGTCCTTCTATGATCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATAGATTTGTTATTTATTATGCATTTCATGTCCTTCTATGATCA  1074

seq1  GTTTTATGAACATTTTCTAATGTTTTATTAATATTATAATTTAATAGTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGAACATTTTCTAATGTTTTATTAATATTATAATTTAATAGTTA  1124

seq1  TTATTTTCACAGCATACTGAATTC  1170
      ||||||||||||||||||||||||
seq2  TTATTTTCACAGCATACTGAATTC  1148