BAC Information

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BAC

Clone NameB6Ng01-109L09
Chromosome2 (Build37)
Map Location 7,854,125 - 7,974,963
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L09.bB6Ng01-109L09.g
ACCDH916544DH916545
length7531,125
definitionDH916544|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L09, 5' end.DH916545|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,974,210 - 7,974,963)(7,854,125 - 7,855,270)
sequence
gaattcataaagtaagttaatctgctctcagttttaaattaaagtttatc
atggatttgtatatatacaaaaaaatccctgtataaggattaggtgctct
gcagtttcaggtagtcactgtggctttggactgtatcccttattgacaaa
gaatgaaatggcaaattaagtctcttattttgaacttgaaagagcttgtg
taaatcttatttctaaaaacctggtccctgctaggacagcaaatgcttgc
tcagggtcccttcagggaatatcttatgactcaaatctattttagaattt
tgccaggatcctgcttgagggtactgagaaggaatgaagtcttccaaatg
tgtgggcttaatttcttattaaacttcccattatctttgtgctgtgaatt
atttctttcttcacagctacagtgtggttttgaagaacttattggtaatt
atgcatttttggcaaatgagtttattattctactcaatgtggccatcacc
tatgataaggctgagctatggtgattacttcaggttcaagagtatttcaa
aaatgaaactaagctgggtagtggtggtgcacgtctttaattccagaact
tgggaggaagaggcaggcagatttctaagttctaggccagcctggtccac
agagtgagttccaggacagccaggaatactcagagaatccctgtctctaa
aaaagaagaagaagaagaagaagaagaagaagaagatgaagaagaagaga
aga

gaattcacttgaaatacactttctagattgcatcttcaggaagaattggt
agatatcagtagatttctggcagacaccagtcttgccaattttgggggac
ttacggtgggatgttcttgaatttgggtcacaatcactttggagatccct
tttctattgagagcttttggtgccacttctagaaagttggcatttgtcac
tgggctccaacaaggaattagctcagacaagaatattagaaacagtgact
gtggggctgagctaactactttgctgaactaggtgctgaactgccttagg
tgatctctttgctcactattttgcttaattattacctcctgtggtccttt
ggcttccccctttgcctgattactatcgtttgtgatctctttgtttacta
ctttgcttgatgactttgtctttgttctaagaactgaccatgtgttctga
atgcacctagaatgatataaaagcaggctggagtaaaataaagctgtttt
agcgtcagtgcggtctccagttatgttacagttttgtctaattttcttag
tcttttcaatcttcatccctcccttgaggccccgatgactgactgagctg
gcttggtcactttcccctctagcttgcctttctctggaacagctttcaag
gtcctaacacaaaaatgcaatctagtttatgatcactagaggccagcttc
atatgtttgatttcctaacatgaatgtgtcaaaccccaaaggatactcag
aggctccctgtctatttttaggcttctaaccattaaaggaggaagaccat
tctcaaaagtgatagtcatttgtctgcatttcaacctccgttatacagcg
ctgagcttagaaaacattctacagtttgctcaataggaaaactaaccaaa
tgaaaccactaacacaccacttcgtaaagtttcagatctgggcatgatta
ttttctgtgcaacccaaatctgagattcatacctttaagactttgactca
tgggatctttatgaaacaaactcagattctagaaatcaagagacatcatc
acaaattctgtctctagagaaactgtcaagaggaatgtgacagttaagga
gggaagcacaaaaactcactggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7974210_7974963
seq2: B6Ng01-109L09.b_49_801 (reverse)

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  50
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTC-TCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  49

seq1  TTTTTTAGAGACAGGGATTCTCTGAGTATTCCTGGCTGTCCTGGAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGAGACAGGGATTCTCTGAGTATTCCTGGCTGTCCTGGAACTCA  99

seq1  CTCTGTGGACCAGGCTGGCCTAGAACTTAGAAATCTGCCTGCCTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGACCAGGCTGGCCTAGAACTTAGAAATCTGCCTGCCTCTTCCT  149

seq1  CCCAAGTTCTGGAATTAAAGACGTGCACCACCACTACCCAGCTTAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCTGGAATTAAAGACGTGCACCACCACTACCCAGCTTAGTTTC  199

seq1  ATTTTTGAAATACTCTTGAACCTGAAGTAATCACCATAGCTCAGCCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAAATACTCTTGAACCTGAAGTAATCACCATAGCTCAGCCTTAT  249

seq1  CATAGGTGATGGCCACATTGAGTAGAATAATAAACTCATTTGCCAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGATGGCCACATTGAGTAGAATAATAAACTCATTTGCCAAAAAT  299

seq1  GCATAATTACCAATAAGTTCTTCAAAACCACACTGTAGCTGTGAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTACCAATAAGTTCTTCAAAACCACACTGTAGCTGTGAAGAAAG  349

seq1  AAATAATTCACAGCACAAAGATAATGGGAAGTTTAATAAGAAATTAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCACAGCACAAAGATAATGGGAAGTTTAATAAGAAATTAAGCC  399

seq1  CACACATTTGGAAGACTTCATTCCTTCTCAGTACCCTCAAGCAGGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTTGGAAGACTTCATTCCTTCTCAGTACCCTCAAGCAGGATCCT  449

seq1  GGCAAAATTCTAAAATAGATTTGAGTCATAAGATATTCCCTGAAGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATTCTAAAATAGATTTGAGTCATAAGATATTCCCTGAAGGGACC  499

seq1  CTGAGCAAGCATTTGCTGTCCTAGCAGGGACCAGGTTTTTAGAAATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCATTTGCTGTCCTAGCAGGGACCAGGTTTTTAGAAATAAGA  549

seq1  TTTACACAAGCTCTTTCAAGTTCAAAATAAGAGACTTAATTTGCCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAAGCTCTTTCAAGTTCAAAATAAGAGACTTAATTTGCCATTTC  599

seq1  ATTCTTTGTCAATAAGGGATACAGTCCAAAGCCACAGTGACTACCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGTCAATAAGGGATACAGTCCAAAGCCACAGTGACTACCTGAAA  649

seq1  CTGCAGAGCACCTAATCCTTATACAGGGATTTTTTTGTATATATACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGCACCTAATCCTTATACAGGGATTTTTTTGTATATATACAAAT  699

seq1  CCATGATAAACTTTAATTTAAAACTGAGAGCAGATTAACTTACTTTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATAAACTTTAATTTAAAACTGAGAGCAGATTAACTTACTTTATGA  749

seq1  ATTC  754
      ||||
seq2  ATTC  753


seq1: chr2_7854125_7855270
seq2: B6Ng01-109L09.g_66_1190

seq1  GAATTCACTTGAAATACACTTTCTAGATTGCATCTTCAGGAAGAATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAATACACTTTCTAGATTGCATCTTCAGGAAGAATTGGT  50

seq1  AGATATCAGTAGATTTCTGGCAGACACCAGTCTTGCCAATTTTGGGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAGTAGATTTCTGGCAGACACCAGTCTTGCCAATTTTGGGGGAC  100

seq1  TTACGGTGGGATGTTCTTGAATTTGGGTCACAATCACTTTGGAGATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGTGGGATGTTCTTGAATTTGGGTCACAATCACTTTGGAGATCCCT  150

seq1  TTTCTATTGAGAGCTTTTGGTGCCACTTCTAGAAAGTTGGCATTTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGAGAGCTTTTGGTGCCACTTCTAGAAAGTTGGCATTTGTCAC  200

seq1  TGGGCTCCAACAAGGAATTAGCTCAGACAAGAATATTAGAAACAGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCAACAAGGAATTAGCTCAGACAAGAATATTAGAAACAGTGACT  250

seq1  GTGGGGCTGAGCTAACTACTTTGCTGAACTAGGTGCTGAACTGCCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGAGCTAACTACTTTGCTGAACTAGGTGCTGAACTGCCTTAGG  300

seq1  TGATCTCTTTGCTCACTATTTTGCTTAATTATTACCTCCTGTGGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTTGCTCACTATTTTGCTTAATTATTACCTCCTGTGGTCCTTT  350

seq1  GGCTTCCCCCTTTGCCTGATTACTATCGTTTGTGATCTCTTTGTTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCCCTTTGCCTGATTACTATCGTTTGTGATCTCTTTGTTTACTA  400

seq1  CTTTGCTTGATGACTTTGTCTTTGTTCTAAGAACTGACCATGTGTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTGATGACTTTGTCTTTGTTCTAAGAACTGACCATGTGTTCTGA  450

seq1  ATGCACCTAGAATGATATAAAAGCAGGCTGGAGTAAAATAAAGCTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTAGAATGATATAAAAGCAGGCTGGAGTAAAATAAAGCTGTTTT  500

seq1  AGCGTCAGTGCGGTCTCCAGTTATGTTACAGTTTTGTCTAATTTTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGTGCGGTCTCCAGTTATGTTACAGTTTTGTCTAATTTTCTTAG  550

seq1  TCTTTTCAATCTTCATCCCTCCCTTGAGGCCCCGATGACTGACTGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAATCTTCATCCCTCCCTTGAGGCCCCGATGACTGACTGAGCTG  600

seq1  GCTTGGTCACTTTCCCCTCTAGCTTGCCTTTCTCTGGAACAGCTTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCACTTTCCCCTCTAGCTTGCCTTTCTCTGGAACAGCTTTCAAG  650

seq1  GTCCTAACACAAAAATGCAATCTAGTTTATGATCACTAGAGGCCAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAACACAAAAATGCAATCTAGTTTATGATCACTAGAGGCCAGCTTC  700

seq1  ATATGTTTGATTTCCTAACATGAATGTGTCAAACCCCAAAGGATACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGATTTCCTAACATGAATGTGTCAAACCCCAAAGGATACTCAG  750

seq1  AGGCTCCCTGTCTATTTTTAGGCTTCTAACCATT-AAGGAGGAAGACCAT  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCTCCCTGTCTATTTTTAGGCTTCTAACCATTAAAGGAGGAAGACCAT  800

seq1  TCTCAAAAGTGATAGTCATTTGTCTGCATTTCAACCTCCGTTATACAGCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGTGATAGTCATTTGTCTGCATTTCAACCTCCGTTATACAGCG  850

seq1  CTGAGCTTAGAAAACATTCTACAGTTTGCTCAATAGGAAAACTAACCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTAGAAAACATTCTACAGTTTGCTCAATAGGAAAACTAACCAAA  900

seq1  TGAAACCACTAACACACCACTTCGTAAAGTTTCAGATCTGGGCATGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCACTAACACACCACTTCGTAAAGTTTCAGATCTGGGCATGATTA  950

seq1  TTTTCTGTGCAACCCAAATCTGAGATTCATACCTTTTAAGAACTTTGAAC  999
      ||||||||||||||||||||||||||||||||| |||||| |||||| ||
seq2  TTTTCTGTGCAACCCAAATCTGAGATTCATACC-TTTAAG-ACTTTG-AC  997

seq1  TCATGGGATCTTTATGAAACAAAACTCAGAATTCTAGAAAATTCAAAGAG  1049
      |||||||||||||||||||| |||||||| ||||||||||  || |||||
seq2  TCATGGGATCTTTATGAAAC-AAACTCAG-ATTCTAGAAA--TC-AAGAG  1042

seq1  GAACAATCATTCACAAATTCTGTCTCTTAGGAGAAAACTTGTCAAAGAAG  1099
        || |||| |||||||||||||||||    ||| ||  ||||||   ||
seq2  --AC-ATCA-TCACAAATTCTGTCTCT----AGAGAAACTGTCAA--GAG  1082

seq1  GAATGTGACAGTTTTAAGGAGGGGAAGCACAAAAACTCACTTGGAAA  1146
      |||||||||||  ||||||| ||||||||||||||||||| ||||||
seq2  GAATGTGACAG--TTAAGGA-GGGAAGCACAAAAACTCAC-TGGAAA  1125


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