BAC Information

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BAC

Clone NameB6Ng01-110A04
Chromosome2 (Build37)
Map Location 84,341,719 - 84,468,011
singlet/doubletdoublet
Overlap geneLOC672763, Ctnnd1
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A04.bB6Ng01-110A04.g
ACCDH916759DH916760
length1,172952
definitionDH916759|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A04, 5' end.DH916760|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,466,834 - 84,468,011)(84,341,719 - 84,342,326)
sequence
gaattcaattgtgttctagatccgattaatttcatctactacttcacaaa
atagtttggggctgagacattaccatgaagtaatgtaattggaagattga
atctaactcttgaaacaacttaatacctcaccttgtagaacacactttat
ctcattcagtgttcacggcagcccagacttagaatggcctgttgctattg
ccatcacacagatgagaataaccagaacataagccaggactgggaccagc
cttgtgaattatcctgactcacacagccactgcttctcccttttaaacag
aaaatctatccatgcgtaaagacctaggagtgtgacctctttttctactt
agctatattgtcctcttagagtcaacttgaaagccaggatgacggagaag
tccagactgtgctttgtgactgacataggtccctcagtattttccctaac
ttcctttttaactccctgtatcaaattaaagttgtgggggcaaaaagtga
ccatttatggcatgatgacaaacacggtcatctgtggcagggagtgttgt
ttctctgtgccccatagtagtggtcgcctgggcttttattagcaagaaga
ttacagggtggaggctgccacagtggtaactgcagtacaggccctgttta
aaatcagtaactggaggagtctctcttgagctgggttctcttgatgtgga
aggttcataggtcaatgtacatagcagatgacggcaagtgtttaaaatga
agaaatagggataaaaaggaaacaattagaacaagccaggagtggtgata
aattcttatactccagtacttgagaagtagagacaggagaatcacgaatt
taaggtcagcttaagctttatagtgagtttgaggccagcctgggagactg
tcacagacaaaacacacacacaaaaaacaacgtaataaagaaagaccttt
gagtggccgtctggaatgtgggtaggagtatgagaaagagcattgggata
ttgggcgttgggctgagtgagaacagtggtgataaatgattgtggggagc
ctaagggctgggtagaaacattagggacagtcagcgggttctccggacta
gtgactgaagcgattcagttactgggcaccttgcttatcagttctctggt
acggttgtctgaatgctgatac
gaattccaggacaacctggtctacacagatcgagttccaggacagcaagg
gctgcacagagaaaccctgtctcaaaaaaacaacaaaaataaataagaaa
caagctaataaaaatatgatatacatataaaatgaaataccgggaaacca
ttaaaaagaaaatagttctgtcacatgccacaatgcagataattgtctgg
tgttatgtcagggaatagttagtgatcaccaaaaacatacacaggagcca
atctgatgcaactcacagcaggtctttattctattcgagctagcaccctc
cccaaagcaccacagttacacaggatggttttcgcggttggggagcccct
aatgtctatggggcaaggctttatagtaagcagcaagcagggaatatgtg
tgcaagcatctaattggaaagctcttgtggcccttaacataatgggctga
tgagggagtcatataaacttaacttctgcccccttctgcattggtggtca
ttaagcaaggggtaggcttgtaacctcgggggtgcacatttgttggggga
ataacctggagacactggtcttgttgagggtgtaacctggagactggagc
taggctcaggttttgttgggggggggggcaacttggaaactaaagctagg
tatcagcctgttaggttacctgagttaaacttaggtcaggttctctgaaa
tggagtctgaattgaaaagatttgtcgtctcactggacattaggctgggt
aaataaaccactgacagaagacaaatgctgcaggagcccctcacaacgac
agaaacagagcacagaaaagtcactgccgcagctgaggaaaagagaaaac
caggatttctactcatggggtgtatcattcttgcaaaacgaagaagctgt
aagatcttctgctgctgatatgtggacatacggaacattgttgaaccata
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84466834_84468011
seq2: B6Ng01-110A04.b_49_1220 (reverse)

seq1  GTATCCAGCATTCAG-CAACAGTACCCAGAAGAAACTGATAGACAA-GTG  48
      |||| |||||||||| |||| ||| |||||   ||||||||  ||| |||
seq2  GTAT-CAGCATTCAGACAACCGTA-CCAGA--GAACTGATAAGCAAGGTG  46

seq1  CCCAGTAAACTGAATCGCTTCAGTCACTAAGTCC-GAGAACACGCTGACT  97
      |||||| ||||||||||||||||||||| ||||| |||||| ||||||||
seq2  CCCAGT-AACTGAATCGCTTCAGTCACT-AGTCCGGAGAACCCGCTGACT  94

seq1  GTCCCTAAATGTATCCTACCCAGCCC-TAGGCT-CCCACAATCATTTATC  145
      |||||| ||||| | ||||||||||| |||||| ||||||||||||||||
seq2  GTCCCT-AATGT-TTCTACCCAGCCCTTAGGCTCCCCACAATCATTTATC  142

seq1  AACCACTGTTCTCACTCAGCCCAACGCCCAATATCCCAATGCCTCTTTCT  195
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -ACCACTGTTCTCACTCAGCCCAACGCCCAATATCCCAATG-CTCTTTCT  190

seq1  CATACTCCTACCCACATTCCAGACGGCCACTCAAAGGTCTTTCTTTATTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCTACCCACATTCCAGACGGCCACTCAAAGGTCTTTCTTTATTA  240

seq1  CGTTGTTTTTTGTGTGTGTGTTTTTGTCTGTGACAGTCTCCCAGGCTGGC  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGTTGTTTTTTGTGTGTGTG-TTTTGTCTGTGACAGTCTCCCAGGCTGGC  289

seq1  CTCAAACTCACTATAAAGCTTAAGCTGACCTTAAATTCCTGATTCTCCTG  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAAACTCACTATAAAGCTTAAGCTGACCTTAAATTCGTGATTCTCCTG  339

seq1  TCTCTACTTCTCAAGTACTGGAGTATAAGAATTTATCACCACTCCTGGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTCTCAAGTACTGGAGTATAAGAATTTATCACCACTCCTGGCT  389

seq1  TGTTCTAATTGTTTCCTTTTTATCCCTATTTCTTCATTTTAAACACTTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATTGTTTCCTTTTTATCCCTATTTCTTCATTTTAAACACTTGC  439

seq1  CGTCATCTGCTATGTACATTGACCTATGAACCTTCCACATCAAGAGAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCTGCTATGTACATTGACCTATGAACCTTCCACATCAAGAGAACC  489

seq1  CAGCTCAAGAGAGACTCCTCCAGTTACTGATTTTAAACAGGGCCTGTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAGAGAGACTCCTCCAGTTACTGATTTTAAACAGGGCCTGTACT  539

seq1  GCAGTTACCACTGTGGCAGCCTCCACCCTGTAATCTTCTTGCTAATAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACCACTGTGGCAGCCTCCACCCTGTAATCTTCTTGCTAATAAAA  589

seq1  GCCCAGGCGACCACTACTATGGGGCACAGAGAAACAACACTCCCTGCCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCGACCACTACTATGGGGCACAGAGAAACAACACTCCCTGCCAC  639

seq1  AGATGACCGTGTTTGTCATCATGCCATAAATGGTCACTTTTTGCCCCCAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCGTGTTTGTCATCATGCCATAAATGGTCACTTTTTGCCCCCAC  689

seq1  AACTTTAATTTGATACAGGGAGTTAAAAAGGAAGTTAGGGAAAATACTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAATTTGATACAGGGAGTTAAAAAGGAAGTTAGGGAAAATACTGA  739

seq1  GGGACCTATGTCAGTCACAAAGCACAGTCTGGACTTCTCCGTCATCCTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTATGTCAGTCACAAAGCACAGTCTGGACTTCTCCGTCATCCTGG  789

seq1  CTTTCAAGTTGACTCTAAGAGGACAATATAGCTAAGTAGAAAAAGAGGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTTGACTCTAAGAGGACAATATAGCTAAGTAGAAAAAGAGGTC  839

seq1  ACACTCCTAGGTCTTTACGCATGGATAGATTTTCTGTTTAAAAGGGAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTAGGTCTTTACGCATGGATAGATTTTCTGTTTAAAAGGGAGAA  889

seq1  GCAGTGGCTGTGTGAGTCAGGATAATTCACAAGGCTGGTCCCAGTCCTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCTGTGTGAGTCAGGATAATTCACAAGGCTGGTCCCAGTCCTGG  939

seq1  CTTATGTTCTGGTTATTCTCATCTGTGTGATGGCAATAGCAACAGGCCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTCTGGTTATTCTCATCTGTGTGATGGCAATAGCAACAGGCCAT  989

seq1  TCTAAGTCTGGGCTGCCGTGAACACTGAATGAGATAAAGTGTGTTCTACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCTGGGCTGCCGTGAACACTGAATGAGATAAAGTGTGTTCTACA  1039

seq1  AGGTGAGGTATTAAGTTGTTTCAAGAGTTAGATTCAATCTTCCAATTACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGTATTAAGTTGTTTCAAGAGTTAGATTCAATCTTCCAATTACA  1089

seq1  TTACTTCATGGTAATGTCTCAGCCCCAAACTATTTTGTGAAGTAGTAGAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATGGTAATGTCTCAGCCCCAAACTATTTTGTGAAGTAGTAGAT  1139

seq1  GAAATTAATCGGATCTAGAACACAATTGAATTC  1178
      |||||||||||||||||||||||||||||||||
seq2  GAAATTAATCGGATCTAGAACACAATTGAATTC  1172

seq1: chr2_84341719_84342326
seq2: B6Ng01-110A04.g_65_672

seq1  GAATTCCAGGACAACCTGGTCTACACAGATCGAGTTCCAGGACAGCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACCTGGTCTACACAGATCGAGTTCCAGGACAGCAAGG  50

seq1  GCTGCACAGAGAAACCCTGTCTCAAAAAAACAACAAAAATAAATAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGAGAAACCCTGTCTCAAAAAAACAACAAAAATAAATAAGAAA  100

seq1  CAAGCTAATAAAAATATGATATACATATAAAATGAAATACCGGGAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAATAAAAATATGATATACATATAAAATGAAATACCGGGAAACCA  150

seq1  TTAAAAAGAAAATAGTTCTGTCACATGCCACAATGCAGATAATTGTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAATAGTTCTGTCACATGCCACAATGCAGATAATTGTCTGG  200

seq1  TGTTATGTCAGGGAATAGTTAGTGATCACCAAAAACATACACAGGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTCAGGGAATAGTTAGTGATCACCAAAAACATACACAGGAGCCA  250

seq1  ATCTGATGCAACTCACAGCAGGTCTTTATTCTATTCGAGCTAGCACCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCAACTCACAGCAGGTCTTTATTCTATTCGAGCTAGCACCCTC  300

seq1  CCCAAAGCACCACAGTTACACAGGATGGTTTTCGCGGTTGGGGAGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCACCACAGTTACACAGGATGGTTTTCGCGGTTGGGGAGCCCCT  350

seq1  AATGTCTATGGGGCAAGGCTTTATAGTAAGCAGCAAGCAGGGAATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATGGGGCAAGGCTTTATAGTAAGCAGCAAGCAGGGAATATGTG  400

seq1  TGCAAGCATCTAATTGGAAAGCTCTTGTGGCCCTTAACATAATGGGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCATCTAATTGGAAAGCTCTTGTGGCCCTTAACATAATGGGCTGA  450

seq1  TGAGGGAGTCATATAAACTTAACTTCTGCCCCCTTCTGCATTGGTGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTCATATAAACTTAACTTCTGCCCCCTTCTGCATTGGTGGTCA  500

seq1  TTAAGCAAGGGGTAGGCTTGTAACCTCGGGGGTGCACATTTGTTGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAGGGGTAGGCTTGTAACCTCGGGGGTGCACATTTGTTGGGGGA  550

seq1  ATAACCTGGAGACACTGGTCTTGTTGAGGGTGTAACCTGGAGACTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGAGACACTGGTCTTGTTGAGGGTGTAACCTGGAGACTGGAGC  600

seq1  TAGGCTCA  608
      ||||||||
seq2  TAGGCTCA  608