BAC Information

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BAC

Clone NameB6Ng01-111O01
Chromosome2 (Build37)
Map Location 60,119,446 - 60,271,447
singlet/doubletdoublet
Overlap geneCd302, Ly75, LOC100039176, Pla2r1
Upstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, LOC625861
Downstream geneItgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O01.bB6Ng01-111O01.g
ACCDH918098DH918099
length802951
definitionDH918098|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O01, 5' end.DH918099|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,119,446 - 60,120,248)(60,270,492 - 60,271,447)
sequence
gaattcagttataagttccaagatacaattggtaagcaatcacaattgca
actgacacctctacttttaaaattatcccatttttcatcattattaccat
aaaatagagtttaaagacacatcgaaagaaaacaaagctcttcaagacag
caaggggcttctgctgttgcagagcctcttcctaggaagatgagtgatgg
taagaatgtagacactgaagataaaacactgagatgtaaccaagagtgta
ggtgtctggggaaggccttggatattacataatagcgaatatctaaatag
taggggaaggataaccacaccaacagcaagggtttaagtagcctgtgtag
aagaaagagaaggttagggttcccacaagccaggctggagaaactcagtt
aacagcagggagggtagtgagttaatatcagaaagaaggcaggggcactg
aaaccattgattacaggtaacagccactcaaaatctgaggcctagatgcc
accccacatgagaaacacagaaggaagacttacattcactcctcccatac
cactcgggctaaaccactgacccagtagtcccaagcatatagtggtgagc
gtgggcactgtcccatagaggctctagatctagaggcgtggcccagcggt
aaagaacttggtgcactaccatgaggatctgggtttagatccccaaccag
cacctacaacaaaccaatccaaaaccagagaagccccagacaggtctgcc
atgaaacttctgaagttaaattgatgttatagccattgtgtctgagctga
ga
gaattctgtgtcgccaagggtgggacgctggtctccatcaaaagtgaatt
ggaacaaggtagagtctgagggttcagccaagccaaaatggcaaccggca
ttcaagtcttaatcaaaacagcacctcaaacttgcatttacaaatcaaca
cttaaagcatcatgttgctaagacacaggaaatctcagtttgagcatcag
ggtttctgctatgacatctgtgagtcagtaggctgcctagaaactgctgc
ccttggaggtttgaactgaagagaataaggacttaacatgtcctctaaaa
tggctaaaatagttcctcaggaacactagggtagttgcatgataagcttt
ttaaagatcattttgagttcaacctatacatttcaatttgaaactcaggc
aattatacatatctgtttaaatatggtacattaatcctcctttgtttaaa
acaatagtaagtaaacactggaagttgttttgctaaataatctgatgaaa
tatcaggttatccagctcgttttaggtcaatttaaactgaaaccaaaatg
aaagacaactcgttacaggaacaaagtacggaactcctataactgatgca
taatgacgcttgctgtcatttgaatataatcatttctgtgaacagcattt
gctgaccacctgatgacttgtgttggtattatttagataaattattagat
aatgcatttctcttttccagctttattacctatgaatctttttggccaga
ccacgaatgtgtggatagggttacaaagtctaatcatgagaaatgggtaa
atgggaagcctctggtgtactctaactggtctccatcggatatataaatg
taagttcaatgttattgggggcaggttttcttggattgaccctatggact
ctacacttaaacatgtggctgtgacccatgaatccttaagttttaatttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_60119446_60120248
seq2: B6Ng01-111O01.b_35_836

seq1  GAATTCAGTTATAAGTTCCAAGATACAATTGGTAAGCAATCACAATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTATAAGTTCCAAGATACAATTGGTAAGCAATCACAATTGCA  50

seq1  ACTGACACCTCTACTTTTAAAATTATCCCATTTTTCATCATTATTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACCTCTACTTTTAAAATTATCCCATTTTTCATCATTATTACCAT  100

seq1  AAAATAGAGTTTAAAGACACATCGAAAGAAAACAAAGCTCTTCAAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGTTTAAAGACACATCGAAAGAAAACAAAGCTCTTCAAGACAG  150

seq1  CAAGGGGCTTCTGCTGTTGCAGAGCCTCTTCCTAGGAAGATGAGTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGCTTCTGCTGTTGCAGAGCCTCTTCCTAGGAAGATGAGTGATGG  200

seq1  TAAGAATGTAGACACTGAAGATAAAACACTGAGATGTAACCAAGAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTAGACACTGAAGATAAAACACTGAGATGTAACCAAGAGTGTA  250

seq1  GGTGTCTGGGGAAGGCCTTGGATATTACATAATAGCGAATATCTAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGGGGAAGGCCTTGGATATTACATAATAGCGAATATCTAAATAG  300

seq1  TAGGGGAAGGATAACCACACCAACAGCAAGGGTTTAAGTAGCCTGTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAGGATAACCACACCAACAGCAAGGGTTTAAGTAGCCTGTGTAG  350

seq1  AAGAAAGAGAAGGTTAGGGTTCCCACAAGCCAGGCTGGAGAAACTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAAGGTTAGGGTTCCCACAAGCCAGGCTGGAGAAACTCAGTT  400

seq1  AACAGCAGGGAGGGTAGTGAGTTAATATCAGAAAGAAGGCAGGGGCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGGAGGGTAGTGAGTTAATATCAGAAAGAAGGCAGGGGCACTG  450

seq1  AAACCATTGATTACAGGTAACAGCCACTCAAAATCTGAGGCCTAGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGATTACAGGTAACAGCCACTCAAAATCTGAGGCCTAGATGCC  500

seq1  ACCCCACATGAGAAACACAGAAGGAAGACTTACATTCACTCCTCCCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACATGAGAAACACAGAAGGAAGACTTACATTCACTCCTCCCATAC  550

seq1  CACTCGGGCTAAACCACTGACCCAGTAGTCCCAAGCATATAGTGGTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGCTAAACCACTGACCCAGTAGTCCCAAGCATATAGTGGTGAGC  600

seq1  GTGGGCACTGTCCCAGAGAGGCTCTAGATCTAGAGGCGTGGCCCAGCGGT  650
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGGGCACTGTCCCATAGAGGCTCTAGATCTAGAGGCGTGGCCCAGCGGT  650

seq1  AAAGAACTTGGTGCACTACCATGAGGATCTGGGTTTAGATCCCCAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTTGGTGCACTACCATGAGGATCTGGGTTTAGATCCCCAACCAG  700

seq1  CACCTACAACAAACCAATCCAAAACCAGAGAAGCCCCAGACAGGTCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACAACAAACCAATCCAAAACCAGAGAAGCCCCAGACAGGTCTGCC  750

seq1  ATGGAACCTTCTGAAGTTAAA-TGATGTTATAGCCATTGTGTTCTGAGCT  799
      || ||| |||||||||||||| ||||||||||||||||||| ||||||||
seq2  AT-GAAACTTCTGAAGTTAAATTGATGTTATAGCCATTGTG-TCTGAGCT  798

seq1  GAGA  803
      ||||
seq2  GAGA  802

seq1: chr2_60270492_60271447
seq2: B6Ng01-111O01.g_67_1017 (reverse)

seq1  AAAAATATTTAAAACTTAA-GAGTCTTAGGTCACAGCACAATGGTTAAAG  49
      |||||   ||||||||||| || || | ||||||||| ||   ||| |||
seq2  AAAAA---TTAAAACTTAAGGATTCATGGGTCACAGC-CACATGTTTAAG  46

seq1  TGTAGAAGTCCCTGGGTTCAATCCCAGAAAACCCTGCCCCCAATAACATT  99
      ||||| ||||| | || ||||||| |||||| ||||||||||||||||||
seq2  TGTAG-AGTCCATAGGGTCAATCCAAGAAAA-CCTGCCCCCAATAACATT  94

seq1  TGAAACTTACATTTATTATATCCGATGGAGACCAGTTAGAGTACACCAGA  149
         |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  --GAACTTACATTTA-TATATCCGATGGAGACCAGTTAGAGTACACCAGA  141

seq1  GGCTTCCCATTTACCCATTTCTCATGATTAGTACTTTGTAACCCTATCCA  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTTCCCATTTACCCATTTCTCATGATTAG-ACTTTGTAACCCTATCCA  190

seq1  CACATTCGTGGTCTGGCCAAAAAGATTCATA-GTAATAAAAGCTGGAAAA  248
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CACATTCGTGGTCTGGCCAAAAAGATTCATAGGTAAT-AAAGCTGGAAAA  239

seq1  GAGAAATGCATTATCTAATAA-TTATCT-AATAATACC-ACACAAGTCAT  295
      ||||||||||||||||||||| |||||| ||||||||| |||||||||||
seq2  GAGAAATGCATTATCTAATAATTTATCTAAATAATACCAACACAAGTCAT  289

seq1  CAGGTGGTCAGCAAATGCTGTTCACAGAAATGATTATATTCAAATGACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTCAGCAAATGCTGTTCACAGAAATGATTATATTCAAATGACAG  339

seq1  CAAGCGTCATTATGCATCAGTTATAGGAGTTCCGTACTTTGTTCCTGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGTCATTATGCATCAGTTATAGGAGTTCCGTACTTTGTTCCTGTAA  389

seq1  CGAGTTGTCTTTCATTTTGGTTTCAGTTTAAATTGACCT-AAACGAGCTG  444
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGAGTTGTCTTTCATTTTGGTTTCAGTTTAAATTGACCTAAAACGAGCTG  439

seq1  GATAACCTGATATTTCATCAGATTATTTAGCAAAACAACTTCCAGTGTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTGATATTTCATCAGATTATTTAGCAAAACAACTTCCAGTGTTT  489

seq1  ACTTACTATTGTTTTAAACAAAGGAGGATTAATGTACCATATTTAAACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTATTGTTTTAAACAAAGGAGGATTAATGTACCATATTTAAACAG  539

seq1  ATATGTATAATTGCCTGAGTTTCAAATTGAAATGTATAGGTTGAACTCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATAATTGCCTGAGTTTCAAATTGAAATGTATAGGTTGAACTCAA  589

seq1  AATGATCTTTAAAAAGCTTATCATGCAACTACCCTAGTGTTCCTGAGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTTAAAAAGCTTATCATGCAACTACCCTAGTGTTCCTGAGGAA  639

seq1  CTATTTTAGCCATTTTAGAGGACATGTTAAGTCCTTATTCTCTTCAGTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGCCATTTTAGAGGACATGTTAAGTCCTTATTCTCTTCAGTTC  689

seq1  AAACCTCCAAGGGCAGCAGTTTCTAGGCAGCCTACTGACTCACAGATGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAAGGGCAGCAGTTTCTAGGCAGCCTACTGACTCACAGATGTC  739

seq1  ATAGCAGAAACCCTGATGCTCAAACTGAGATTTCCTGTGTCTTAGCAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAAACCCTGATGCTCAAACTGAGATTTCCTGTGTCTTAGCAACA  789

seq1  TGATGCTTTAAGTGTTGATTTGTAAATGCAAGTTTGAGGTGCTGTTTTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTTAAGTGTTGATTTGTAAATGCAAGTTTGAGGTGCTGTTTTGA  839

seq1  TTAAGACTTGAATGCCGGTTGCCATTTTGGCTTGGCTGAACCCTCAGACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTTGAATGCCGGTTGCCATTTTGGCTTGGCTGAACCCTCAGACT  889

seq1  CTACCTTGTTCCAATTCACTTTTGATGGAGACCAGCGTCCCACCCTTGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTTCCAATTCACTTTTGATGGAGACCAGCGTCCCACCCTTGGC  939

seq1  GACACAGAATTC  956
      ||||||||||||
seq2  GACACAGAATTC  951