BAC Information

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BAC

Clone NameB6Ng01-112F08
Chromosome2 (Build37)
Map Location 94,108,636 - 94,224,370
singlet/doubletdoublet
Overlap geneE530001K10Rik, Ttc17
Upstream geneTspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
Downstream geneItpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112F08.bB6Ng01-112F08.g
ACCDH918425DH918426
length1,1131,207
definitionDH918425|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F08, 5' end.DH918426|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,223,246 - 94,224,370)(94,108,636 - 94,109,864)
sequence
gaattcctggatagccagagctacgtagtgagaccttgtctcaaaaacaa
agaaaccaaaacaacaacaacaaaaagttgttcttgtagcctctggctct
gggatcctgggaaaattttggttgtttgttcttatctggttgagggtttt
gcaaagaaacacacaacttttggttttagaatatagcaaatttaaattct
agaagactttccaaaataaatggtgtgtctgttttgaaaaaaaaaaaaat
aatatccaaaattttaaggaaactgaattacagaaagatgccagtttctt
attgggaataagcgggagtaatgagtgtagactaaagagccttcgagcag
aaaggatcctaaggaccatctccacttacaaggaggaaacggacctgaag
actagacccacgacccgcccgggctctcagactctcggggcagacatggc
agaactggaggcaaagttctcaaggcttgttctttggttttggtttgagg
aggttttgttcctttctctcttactttggcttctattaaaaacaatatgg
ccaaatttggagaacatgggtttatttggcttatgtgtccccatcacatt
ccatcaggaagggaagtcagagcagggacctaggggcaggaactgaagca
gagacgttggctcatggtgagctgtctttttttataactcccagaactgc
cttgccagggctggcacccatcacagtgggctaagccttccaacctcaag
tcatttaatcaagaaagttcccttacagacttagctatgggccagtctga
tggagacattttttcagttaaagttcaccacttcacaggtgactgagctt
gtgtcaagttgccaaaagaaaaaaaacaaatatgaaaaaccccagaaagc
aaaacaaacaaaccaacacaacaaaaccctcactagtacattttgtgagc
actgacccaggagcatgctgtacaccactgtaccactgagctggctacta
ctgttttttattattttatattctgggtacactatagctgtctcgaacca
tcagagatggcatggattccatttcagaactgtgttgagccaccatgtgg
ttgctgagattga
gaattcttaagcctaactcttaggacaaaactgtatctgtcttcagacac
tccagaagaggaagtcagatctcgttatgagtggttgtgagccaccaagt
ggttgctgggatttgaacccaggatttgaagagcagccggtgctcttaat
cgctgagtcatctctccagccctttgattttcaagcatgaaccaaggaga
gctttctcagtgactacacgccacagtactgtatgacagagtaggttagc
agggatctagaagtacggcagctgtttagatgtttgctggctttgtgttc
acagggaaggaataataattaaacaacagcaccctgatcttagacctccg
atgaggcctgtatgacgtgatgcttgcaaggctgtgtaacacggtgactg
acagccaggggccccccagtacatgcttccttcctaactgtgaggaacac
acacattcattctgcaaacaaccatctatgaggcaccgagatcttagaaa
gcttctgaactgtggccaacgttatttatatcatgttatgaaaacacaca
cccaactgaaagccatgcttagctttcaaatcctcagtacactctgagtt
tcctcagccattctatcccatcagaatctgtgggttcgaaacgtgttagc
aagctaaagacacgcgggtggagaaacccatctggtggacctttgtgggg
gtctgggattaaaaagtggctcattgcaggagtggatgatagtttaagaa
catttcctggcatttacattttgctttctttgggtttcagttacccacag
ccaactttgttctgaaaatagtgaataaacactatccccccaaataattt
atgactcactgagtaaagaaagacatctgccatcaagtctgatgacctga
gttcgactcctagtactcacttggtggaagggagagagctgactcctgaa
agtgacctatttatttatttatttatttatttatttatttatttattgac
aaacctttttatttattatttatttatttaatttttatttatttattaat
aatgaaggattctctgcaatccctggcttgttctggactcactctgtaga
acagctggcctcagactcaaaatcgctggattgccacacctccaccccga
agttcggtattagggtgacccacaggcaagttgacctcttaactctgacg
acatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94223246_94224370
seq2: B6Ng01-112F08.b_50_1162 (reverse)

seq1  TCAATTCTCAGCAACCACATGGTGGCTCACAACCG-TCTGTAATGGGATC  49
      |||| ||||||||||||||||||||||||  || | |||| ||||| |||
seq2  TCAA-TCTCAGCAACCACATGGTGGCTCAACACAGTTCTGAAATGGAATC  49

seq1  CAATGCCCTCTTCTGGTGGGTCTGAAGACAGCTATAGTGTACTCAGATAT  99
      | ||||| || |||| ||| ||   ||||||||||||||||| |||| ||
seq2  C-ATGCCATC-TCTGATGGTTC--GAGACAGCTATAGTGTACCCAGA-AT  94

seq1  ATAAAATAAATAAAAAAAACAGTAGTAGCCAGCTCAGTGGTACAGTGGTT  149
      ||||||||   | ||||||||||||||||||||||||||||||||||| |
seq2  ATAAAATA---ATAAAAAACAGTAGTAGCCAGCTCAGTGGTACAGTGG-T  140

seq1  GTACAGCATGCTCTGGGTTCAGTGCTCACAAAATTGTACTAGTGAGGGTT  199
      |||||||||||||  || ||||||||||||||| ||||||||||||||||
seq2  GTACAGCATGCTCCTGGGTCAGTGCTCACAAAA-TGTACTAGTGAGGGTT  189

seq1  TTGTTGTTGTTGGTTTGTTTGTTTTTGCTTTCTGGGGTTTTTCATATTTG  249
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTTG-TGTTGGTTTGTTTG-TTTTGCTTTCTGGGGTTTTTCATATTTG  237

seq1  TTTTTTTTCTTTTGGCAACTTGACACAAGCTCAGTCACCTGTGAAGTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTGGCAACTTGACACAAGCTCAGTCACCTGTGAAGTGGT  287

seq1  GAACTTTAACTGAAAAAATGTCTCCATCAGACTGGCCCATAGCTAAGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTAACTGAAAAAATGTCTCCATCAGACTGGCCCATAGCTAAGTCT  337

seq1  GTAAGGGAACTTTCTTGATTAAATGACTTGAGGTTGGAAGGCTTAGCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAACTTTCTTGATTAAATGACTTGAGGTTGGAAGGCTTAGCCCA  387

seq1  CTGTGATGGGTGCCAGCCCTGGCAAGGCAGTTCTGGGAGTTATAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGGGTGCCAGCCCTGGCAAGGCAGTTCTGGGAGTTATAAAAAAA  437

seq1  GACAGCTCACCATGAGCCAACGTCTCTGCTTCAGTTCCTGCCCCTAGGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCACCATGAGCCAACGTCTCTGCTTCAGTTCCTGCCCCTAGGTC  487

seq1  CCTGCTCTGACTTCCCTTCCTGATGGAATGTGATGGGGACACATAAGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGACTTCCCTTCCTGATGGAATGTGATGGGGACACATAAGCCA  537

seq1  AATAAACCCATGTTCTCCAAATTTGGCCATATTGTTTTTAATAGAAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCATGTTCTCCAAATTTGGCCATATTGTTTTTAATAGAAGCCA  587

seq1  AAGTAAGAGAGAAAGGAACAAAACCTCCTCAAACCAAAACCAAAGAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAGAGAAAGGAACAAAACCTCCTCAAACCAAAACCAAAGAACAA  637

seq1  GCCTTGAGAACTTTGCCTCCAGTTCTGCCATGTCTGCCCCGAGAGTCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGAACTTTGCCTCCAGTTCTGCCATGTCTGCCCCGAGAGTCTGA  687

seq1  GAGCCCGGGCGGGTCGTGGGTCTAGTCTTCAGGTCCGTTTCCTCCTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGGGCGGGTCGTGGGTCTAGTCTTCAGGTCCGTTTCCTCCTTGTA  737

seq1  AGTGGAGATGGTCCTTAGGATCCTTTCTGCTCGAAGGCTCTTTAGTCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATGGTCCTTAGGATCCTTTCTGCTCGAAGGCTCTTTAGTCTAC  787

seq1  ACTCATTACTCCCGCTTATTCCCAATAAGAAACTGGCATCTTTCTGTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTACTCCCGCTTATTCCCAATAAGAAACTGGCATCTTTCTGTAAT  837

seq1  TCAGTTTCCTTAAAATTTTGGATATTATTTTTTTTTTTTTCAAAACAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCTTAAAATTTTGGATATTATTTTTTTTTTTTTCAAAACAGAC  887

seq1  ACACCATTTATTTTGGAAAGTCTTCTAGAATTTAAATTTGCTATATTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTTATTTTGGAAAGTCTTCTAGAATTTAAATTTGCTATATTCTA  937

seq1  AAACCAAAAGTTGTGTGTTTCTTTGCAAAACCCTCAACCAGATAAGAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAGTTGTGTGTTTCTTTGCAAAACCCTCAACCAGATAAGAACA  987

seq1  AACAACCAAAATTTTCCCAGGATCCCAGAGCCAGAGGCTACAAGAACAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAAAATTTTCCCAGGATCCCAGAGCCAGAGGCTACAAGAACAAC  1037

seq1  TTTTTGTTGTTGTTGTTTTGGTTTCTTTGTTTTTGAGACAAGGTCTCACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTGTTTTGGTTTCTTTGTTTTTGAGACAAGGTCTCACT  1087

seq1  ACGTAGCTCTGGCTATCCAGGAATTC  1125
      ||||||||||||||||||||||||||
seq2  ACGTAGCTCTGGCTATCCAGGAATTC  1113

seq1: chr2_94108636_94109864
seq2: B6Ng01-112F08.g_67_1273

seq1  GAATTCTTAAGCCTAACTCTTAGGACAAAACTGTATCTGTCTTCAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCCTAACTCTTAGGACAAAACTGTATCTGTCTTCAGACAC  50

seq1  TCCAGAAGAGGAAGTCAGATCTCGTTATGAGTGGTTGTGAGCCACCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGAGGAAGTCAGATCTCGTTATGAGTGGTTGTGAGCCACCAAGT  100

seq1  GGTTGCTGGGATTTGAACCCAGGATTTGAAGAGCAGCCGGTGCTCTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGATTTGAACCCAGGATTTGAAGAGCAGCCGGTGCTCTTAAT  150

seq1  CGCTGAGTCATCTCTCCAGCCCTTTGATTTTCAAGCATGAACCAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGTCATCTCTCCAGCCCTTTGATTTTCAAGCATGAACCAAGGAGA  200

seq1  GCTTTCTCAGTGACTACACGCCACAGTACTGTATGACAGAGTAGGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCAGTGACTACACGCCACAGTACTGTATGACAGAGTAGGTTAGC  250

seq1  AGGGATCTAGAAGTACGGCAGCTGTTTAGATGTTTGCTGGCTTTGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTAGAAGTACGGCAGCTGTTTAGATGTTTGCTGGCTTTGTGTTC  300

seq1  ACAGGGAAGGAATAATAATTAAACAACAGCACCCTGATCTTAGACCTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGGAATAATAATTAAACAACAGCACCCTGATCTTAGACCTCCG  350

seq1  ATGAGGCCTGTATGACGTGATGCTTGCAAGGCTGTGTAACACGGTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCTGTATGACGTGATGCTTGCAAGGCTGTGTAACACGGTGACTG  400

seq1  ACAGCCAGGGGCCCCCCAGTACATGCTTCCTTCCTAACTGTGAGGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGGCCCCCCAGTACATGCTTCCTTCCTAACTGTGAGGAACAC  450

seq1  ACACATTCATTCTGCAAACAACCATCTATGAGGCACCGAGATCTTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCATTCTGCAAACAACCATCTATGAGGCACCGAGATCTTAGAAA  500

seq1  GCTTCTGAACTGTGGCCAACGTTATTTATATCATGTTATGAAAACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAACTGTGGCCAACGTTATTTATATCATGTTATGAAAACACACA  550

seq1  CCCAACTGAAAGCCATGCTTAGCTTTCAAATCCTCAGTACACTCTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGAAAGCCATGCTTAGCTTTCAAATCCTCAGTACACTCTGAGTT  600

seq1  TCCTCAGCCATTCTATCCCATCAGAATCTGTGGGTTCGAAACGTGTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCATTCTATCCCATCAGAATCTGTGGGTTCGAAACGTGTTAGC  650

seq1  AAGCTAAAGACACGCGGGTGGAGAAACCCATCTGGTGGACCTTTGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGACACGCGGGTGGAGAAACCCATCTGGTGGACCTTTGTGGGG  700

seq1  GTCTGGGATTAAAAAGTGGCTCATTGCAGGAGTGGATGATAGTTTAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGATTAAAAAGTGGCTCATTGCAGGAGTGGATGATAGTTTAAGAA  750

seq1  CATTTCCTGGCATTTACATTTTGCTTTCTTTGGGTTTCAGTTACCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGGCATTTACATTTTGCTTTCTTTGGGTTTCAGTTACCCACAG  800

seq1  CCAACTTTGTTCTGAAAATAGTGAATAAACACTATCCCCCCAAATAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTGTTCTGAAAATAGTGAATAAACACTATCCCCCCAAATAATTT  850

seq1  ATGACTCACTGAGTAAAGAAAGACATCTGCCATCAAGTCTGATGACCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCACTGAGTAAAGAAAGACATCTGCCATCAAGTCTGATGACCTGA  900

seq1  GTTCGACTCCTAGTACTCACTTGGTGGAA-GGAGAGAGCTGACTCCTGAA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCGACTCCTAGTACTCACTTGGTGGAAGGGAGAGAGCTGACTCCTGAA  950

seq1  AGTTGACCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGA  999
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TGACCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGA  999

seq1  CAGACCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT  1049
      || |||| |||||||| ||||||||||||||| || ||||||||||||||
seq2  CAAACCTTTTTATTTA-TTATTTATTTATTTAATT-TTTATTTATTTATT  1047

seq1  TATTTATTGACAGGGTTTCTCTGCATATCCCTGGC-TGTTCTGGAACTCA  1098
       |  || ||  | || ||||||||| ||||||||| |||||||| |||||
seq2  AA--TAATG--AAGGATTCTCTGCA-ATCCCTGGCTTGTTCTGG-ACTCA  1091

seq1  CTCTGTAGACCAGGCTGGCCTCAGACTCAGAAATTCGCCTGCCTTTGCCC  1148
      ||||||||| || |||||||||||||||  ||| ||| |||  ||   ||
seq2  CTCTGTAGAACA-GCTGGCCTCAGACTC--AAAATCG-CTGGATT--GCC  1135

seq1  ACACCTCCACCCCCGAGTGCTGGGATTAAAGGTGTGCACCACCACGGGGA  1198
      |||||||||||||  ||| | || ||||   | |||  ||||     || 
seq2  ACACCTCCACCCCGAAGTTC-GGTATTA---GGGTGACCCAC----AGGC  1177

seq1  AAGTTGACCTCTTAACTTCTGCACACATGCC  1229
      |||||||||||||||| ||||   |||||||
seq2  AAGTTGACCTCTTAAC-TCTGACGACATGCC  1207