BAC Information

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BAC

Clone NameB6Ng01-113J15
Chromosome2 (Build37)
Map Location 31,603,202 - 31,772,823
singlet/doubletdoublet
Overlap geneAbl1, BC094274, Fibcd1, Lamc3
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
Downstream gene2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113J15.bB6Ng01-113J15.g
ACCDH919354DH919355
length9201,047
definitionDH919354|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J15, 5' end.DH919355|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,771,908 - 31,772,823)(31,603,202 - 31,604,254)
sequence
gaattcctgcctcagctcacaccctcaggcttgattcttagactagctgc
tctacccattttacagacgaaggcttacttataccgaatggaaagttgtg
gcaaagtcaagggctccgtgggggtgaaaaatcagttcaatctcatgagg
agattctgtttcctcaacaggagctgcagggagcattatccaggaaaggg
ttgcgaggcttcatctaggctcaattggtgatgtctgccaggcacaggag
ccatggacaatgttctatgtatcagagattccacctgtcttggggaggca
gcagggcgaaaggcctgtgacacagaggtgaaaaggcctgtgtctgtccc
ctagcgcctcctggtcacatgacctctggagaggtttctgtatctctgta
ggtatgagaagtagctctactgaatgacagccaccaccgctggtgggagg
tgtggctctgtcacctacaggtcatgaggtcaccccacttggaaacaaat
gggacaataatggagaatatatcacttgcatgtctacaggaatcaaggag
aagacattagggaggaaggggatgagactatcttattccttcctttatat
tatttatctgtctctcccaggaaaagaacccacccacggctcactccgtc
agctacccctgaactttcagtgcaaagagcgttctgttcttttaaatatc
tagacaattcctgaccttcatggactttgtctccatggcctgggcagtgt
atactactgctgtctgtactgtatagatggggacattcggggagagaagt
gactttttccaagcagtgaggacacttggcttgtggcttttgggtgaaca
cccatgagttccttgtcatctgtgcgactcttctgaatgtctttctcctg
ttgcttcctgtgctggaatt
gaattcaatgggtagaacaggctagcctccaactcagagagacctgcctg
cctttactctcgagtgcttgaataaaggtgtgcacgaccacacccagctt
tatctcaagtttttaacagactatgtgtattggagtgtgtacatgcatgc
agacgccagagttaaccattgctccctccattgctcttagtttttgagac
agactctttccctgaacctagagctcaccagtgagttctcaagataatcc
tgtctccatctccccaggaaaaactcctttccaaagagactgtgcatctc
cattgtcctgcatgattgttagcactgtgtttgtgactgtagcccgtgga
gtggggtgagatgggaacttgctgcagtggacatgaggaactcactgagt
gaatatagtgggagtcccatagaaccagactaggctggccttaaacctgc
ctgtttccttagtgctttgattaaaggtgtgtgccaccgttgcctggcct
gagcatctttttgggtgcttaccagccatttgttttgattcttggtgaca
agccaatgacccttttgccagttttaagccagtttgaacgtgttctaact
gggcaggaagggttctctgcattttgggatgcagctatgcctcagatcca
tggtaggatacatggcttttactttcctcacactgataccatttctcccc
tgtgttctttggagagatttatcatatgtttggactatttggagaattag
gcttgggagtaccaccatccacactgcaagctagagacccaggaaagctg
gtggggtttctagagactttattaccctgggcagtgtgagatgctaatga
cttgaactgggaacacggaaacagaagatccttgtcctgttcaagaagcc
gtacccatggctggagagatggctcagtcgttaagagcataactgctctc
cagaggtcctgagtccattccagcaccacatggtggttcacaacctctat
taaggagatcgaacccccctctctggggtgctgaaagacaggctaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_31771908_31772823
seq2: B6Ng01-113J15.b_49_968 (reverse)

seq1  AATTACCAGCACAGATAGCAACAGGAGAAAGACATTCAG-AGAGTCGCAC  49
      |||| |||||||||  ||||||||||||||||||||||| ||||||||||
seq2  AATT-CCAGCACAGGAAGCAACAGGAGAAAGACATTCAGAAGAGTCGCAC  49

seq1  AGATGAC-AGGAACTCATGGGTGTTCACCC-AAAGCCACAAGCCAAGTGT  97
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  AGATGACAAGGAACTCATGGGTGTTCACCCAAAAGCCACAAGCCAAGTGT  99

seq1  CCTCACTGCTTGG-AAAAGTCACTTCTCTCCCCGAATGTCCCCATCTATA  146
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTTGGAAAAAGTCACTTCTCTCCCCGAATGTCCCCATCTATA  149

seq1  CAGTACAGACAGCAGTAGTATACACTGCCCAGGCCATGGAGACAAAGTCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGACAGCAGTAGTATACACTGCCCAGGCCATGGAGACAAAGTCC  199

seq1  ATGAAGGTCAGGAATTGTCTAGATATTTAAAAGAACAGAACGCTCTTTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCAGGAATTGTCTAGATATTTAAAAGAACAGAACGCTCTTTGC  249

seq1  ACTG-AAGTTCAGGGGTAGCTGACGGAGTGAGCCGTGGGTGGGTTCTTTT  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGTTCAGGGGTAGCTGACGGAGTGAGCCGTGGGTGGGTTCTTTT  299

seq1  CCTGGGAGAGACAGATAAATAATATAAAGGAAGGAATAAGATAGTCTCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGAGACAGATAAATAATATAAAGGAAGGAATAAGATAGTCTCAT  349

seq1  CCCCTTCCTCCCTAATGTCTTCTCCTTGATTCCTGTAGACATGCAAGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTCCCTAATGTCTTCTCCTTGATTCCTGTAGACATGCAAGTGA  399

seq1  TATATTCTCCATTATTGTCCCATTTGTTTCCAAGTGGGGTGACCTCATGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCCATTATTGTCCCATTTGTTTCCAAGTGGGGTGACCTCATGA  449

seq1  CCTGTAGGTGACAGAGCCACACCTCCCACCAGCGGTGGTGGCTGTCATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGTGACAGAGCCACACCTCCCACCAGCGGTGGTGGCTGTCATTC  499

seq1  AGTAGAGCTACTTCTCATACCTACAGAGATACAGAAACCTCTCCAGAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCTACTTCTCATACCTACAGAGATACAGAAACCTCTCCAGAGGT  549

seq1  CATGTGACCAGGAGGCGCTAGGGGACAGACACAGGCCTTTTCACCTCTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCAGGAGGCGCTAGGGGACAGACACAGGCCTTTTCACCTCTGT  599

seq1  GTCACAGGCCTTTCGCCCTGCTGCCTCCCCAAGACAGGTGGAATCTCTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGCCTTTCGCCCTGCTGCCTCCCCAAGACAGGTGGAATCTCTGA  649

seq1  TACATAGAACATTGTCCATGGCTCCTGTGCCTGGCAGACATCACCAATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAACATTGTCCATGGCTCCTGTGCCTGGCAGACATCACCAATTG  699

seq1  AGCCTAGATGAAGCCTCGCAACCCTTTCCTGGATAATGCTCCCTGCAGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGATGAAGCCTCGCAACCCTTTCCTGGATAATGCTCCCTGCAGCT  749

seq1  CCTGTTGAGGAAACAGAATCTCCTCATGAGATTGAACTGATTTTTCACCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAGGAAACAGAATCTCCTCATGAGATTGAACTGATTTTTCACCC  799

seq1  CCACGGAGCCCTTGACTTTGCCACAACTTTCCATTCGGTATAAGTAAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGCCCTTGACTTTGCCACAACTTTCCATTCGGTATAAGTAAGCC  849

seq1  TTCGTCTGTAAAATGGGTAGAGCAGCTAGTCTAAGAATCAAGCCTGAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTGTAAAATGGGTAGAGCAGCTAGTCTAAGAATCAAGCCTGAGGG  899

seq1  TGTGAGCTGAGGCAGGAATTC  916
      |||||||||||||||||||||
seq2  TGTGAGCTGAGGCAGGAATTC  920

seq1: chr2_31603202_31604254
seq2: B6Ng01-113J15.g_69_1115

seq1  GAATTCAATGGGTAGAACAGGCTAGCCTCCAACTCAGAGAGACCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGTAGAACAGGCTAGCCTCCAACTCAGAGAGACCTGCCTG  50

seq1  CCTTTACTCTCGAGTGCTTGAATAAAGGTGTGCACGACCACACCCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTCTCGAGTGCTTGAATAAAGGTGTGCACGACCACACCCAGCTT  100

seq1  TATCTCAAGTTTTTAACAGACTATGTGTATTGGAGTGTGTACATGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGTTTTTAACAGACTATGTGTATTGGAGTGTGTACATGCATGC  150

seq1  AGACGCCAGAGTTAACCATTGCTCCCTCCATTGCTCTTAGTTTTTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCCAGAGTTAACCATTGCTCCCTCCATTGCTCTTAGTTTTTGAGAC  200

seq1  AGACTCTTTCCCTGAACCTAGAGCTCACCAGTGAGTTCTCAAGATAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCCCTGAACCTAGAGCTCACCAGTGAGTTCTCAAGATAATCC  250

seq1  TGTCTCCATCTCCCCAGGAAAAACTCCTTTCCAAAGAGACTGTGCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATCTCCCCAGGAAAAACTCCTTTCCAAAGAGACTGTGCATCTC  300

seq1  CATTGTCCTGCATGATTGTTAGCACTGTGTTTGTGACTGTAGCCCGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTGCATGATTGTTAGCACTGTGTTTGTGACTGTAGCCCGTGGA  350

seq1  GTGGGGTGAGATGGGAACTTGCTGCAGTGGACATGAGGAACTCACTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGAGATGGGAACTTGCTGCAGTGGACATGAGGAACTCACTGAGT  400

seq1  GAATATAGTGGGAGTCCCATAGAACCAGACTAGGCTGGCCTTAAACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGTGGGAGTCCCATAGAACCAGACTAGGCTGGCCTTAAACCTGC  450

seq1  CTGTTTCCTTAGTGCTTTGATTAAAGGTGTGTGCCACCGTTGCCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTTAGTGCTTTGATTAAAGGTGTGTGCCACCGTTGCCTGGCCT  500

seq1  GAGCATCTTTTTGGGTGCTTACCAGCCATTTGTTTTGATTCTTGGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTTTTTGGGTGCTTACCAGCCATTTGTTTTGATTCTTGGTGACA  550

seq1  AGCCAATGACCCTTTTGCCAGTTTTAAGCCAGTTTGAACGTGTTCTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGACCCTTTTGCCAGTTTTAAGCCAGTTTGAACGTGTTCTAACT  600

seq1  GGGCAGGAAGGGTTCTCTGCATTTTGGGATGCAGCTATGCCTCAGATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGGGTTCTCTGCATTTTGGGATGCAGCTATGCCTCAGATCCA  650

seq1  TGGTAGGATACATGGCTTTTACTTTCCTCACACTGATACCATTTCTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATACATGGCTTTTACTTTCCTCACACTGATACCATTTCTCCCC  700

seq1  TGTGTTCTTTGGAGAGATTTATCATATGTTTGGACTATTTGGAGAATTTA  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGTTCTTTGGAGAGATTTATCATATGTTTGGACTATTTGGAGAA-TTA  749

seq1  GGCTTTGGAGTACCACCATCCACACTGCAAGCTAGAGACCCAGGAAAGCT  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGAGTACCACCATCCACACTGCAAGCTAGAGACCCAGGAAAGCT  799

seq1  GGTGGGGTTTCTAGAGACCTTATTACCCTGGGCAGTGTGAGATGCTAATG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTGGGGTTTCTAGAGACTTTATTACCCTGGGCAGTGTGAGATGCTAATG  849

seq1  ACTTGAACTGGGAACACGGAAAACAGAAGATCC-TGTCCTGTTCAAGAAG  899
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACTTGAACTGGGAACACGG-AAACAGAAGATCCTTGTCCTGTTCAAGAAG  898

seq1  CCAGACCCATGGGCTGGAGAGATGGCTCAGTCGTTAAGAGCATTAACTGC  949
      ||  |||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CCGTACCCAT-GGCTGGAGAGATGGCTCAGTCGTTAAGAGCA-TAACTGC  946

seq1  TCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  999
      || |||||||||||||||| ||  | ||||| |||||||||||| |||||
seq2  TC-TCCAGAGGTCCTGAGTCCA--TTCCAGC-ACCACATGGTGGTTCACA  992

seq1  ACCATCTA-TAAGGAGATCGGACCCCCTCTTCTGGGGTGTCTG-AAGACA  1047
      ||| |||| ||||||||||| ||||||   ||||||||| ||| ||||||
seq2  ACC-TCTATTAAGGAGATCGAACCCCCCTCTCTGGGGTG-CTGAAAGACA  1040

seq1  -GCTACA  1053
       ||||||
seq2  GGCTACA  1047