BAC Information

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BAC

Clone NameB6Ng01-114E03
Chromosome2 (Build37)
Map Location 155,276,261 - 155,424,239
singlet/doubletdoublet
Overlap geneLOC668938, Ggtl3, Acss2, Gss, Myh7b
Upstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
Downstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E03.bB6Ng01-114E03.g
ACCDH919822DH919823
length1,048780
definitionDH919822|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E03, 5' end.DH919823|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,423,185 - 155,424,239)(155,276,261 - 155,277,039)
sequence
gaattccaggctagccaatgctatacaatgagaccctatctttagggggg
gtaaaattgtttacaaaagggaaatagttcatatggcttaagccaatgta
caaaatggcttatttacaaatgttgcctgcatgtgtgtgtcatgtatgta
tctggtgcctgacaagaccataaaagggtgtagagtcctctggaaatgga
attagctcacttgtttttctccgagaatgggacagggtcttctgcaagag
cagccagcactcttcatcttgagtcatctctcaacctcagggacaaagct
ccgacccagactatgtctcgctggccaagaaaagtcgcaaaggccacaca
tgatgattccattcgtaagaaatgctcaggatacaaaaaaaaaatcataa
agaaagttcatttatttgaaatgtttactacatttatttacttgtatttg
tgcccatgcagaagtcagagcacacctgagggaatcagctctctccttcc
accacacaggacctggggacagaactcaggtcttcaggcttggtgacaaa
aggccatctggaggatcgtctcactggcccagtcctctctcctctctggg
attttctttgcttgtaagtgaaataagattttgtgataggtcatagagga
tcctggagcctagaaatagccacttggccaggaggtggtgatgcacacct
ttaatcccagcactagggaggcagaggcaggtggatttctgagtttgagc
ccagcctgggctacagagtgagttccaggacagccagttcctggaaagaa
aaactctgtctcgaaaaacaaatgtagagcggagaggaggaagaagagga
ggagaagaggaagctaccttcctaacagtggttcttagcctttctgatgc
tgttgaccctttaatacagttccttatgttgtgctgaccccaaccataaa
aatatttcttgctacttattatgaaattttgctactgttgtaaatataat
gtaatgtctatgtgttctgattgtctatgctaccctggtgaaatgttg
gaattccacggctagcctggtctatagagtgagttccaggacagcgaaag
ctatacagagatatattcgtatacataaacaatattgtaggaatacttat
aatgagaaaaaatcagaaatatccattgagtaacacataagcagaatatg
ccattaataaaatttaattagatatttttttaagatttagaaagaaatgt
atggtatcttaaaggtggggggaatcatagctaggtgtggtggtgccaat
atgcaacccacacctcagaagaagaggaaggaggtttgtaagactttctt
aaaaaagaaaaaaagacaagaaaaaaaagttgtagaacaattcataaaat
aacttcctaagagaaaatatatcagtatatatattgaattttcagagtac
agagaaaacaaaggagaatcacattctgctattcaaatcatatgatacat
ttggagctgggaactggagaaaaggagatgctagctttcatggcctatac
gacaggtgttcagtttgttgcaataaactactgctatgggagttaaaaaa
aaaaactttaagtataattcataaaacaaaagaaataagaaaatgataaa
catgataattacttaaactgatattgttatataaaaggtagccaaataaa
actcttagagactacagaataaaaataaattctagatgcttttaggtagg
cacataaagaccttttatgaattaaaaatttacttgcagggggctgtgtc
tgtgtgtgtgtgtgtgtgtgtgtgtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155423185_155424239
seq2: B6Ng01-114E03.b_46_1090 (reverse)

seq1  CATTTCACAGGGGTTGCCTAAGACCATCAGAACACATAGATATTTACATT  50
      ||||||||  |||| || | |||| ||||||||||||||| | |||||||
seq2  CATTTCACCAGGGTAGCAT-AGACAATCAGAACACATAGACA-TTACATT  48

seq1  ATGATTTACAACAGTAGCAAAATTACAGTAATAAAGTAGCAAAGAAAATA  100
      || ||||||||||||||||||||| || |||| |||||||||   |||||
seq2  AT-ATTTACAACAGTAGCAAAATTTCA-TAAT-AAGTAGCAA--GAAATA  93

seq1  TTTTTATGGTTGGGGTCAGCACAACATAAGGAACTGTATTAAAGGGTC-A  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTATGGTTGGGGTCAGCACAACATAAGGAACTGTATTAAAGGGTCAA  143

seq1  CAGCATCAGAAAGGCTAAGAACCACTGTTAGGAAGGTAGCTTCCTCTTCC  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCATCAGAAAGGCTAAGAACCACTGTTAGGAAGGTAGCTTCCTCTT-C  192

seq1  TCCTCCTCTTCTTCCTCCTCCTCCGCCTCCTACATTTGTTTTTCGAGACA  249
      ||||||||||||||||||| ||||||   |||||||||||||||||||||
seq2  TCCTCCTCTTCTTCCTCCT-CTCCGC--TCTACATTTGTTTTTCGAGACA  239

seq1  GAGTTTTTCTTTCCAGGAACTGGCTGTCCTGGAACTCACTCTGTAGCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTCTTTCCAGGAACTGGCTGTCCTGGAACTCACTCTGTAGCCCA  289

seq1  GGCTGGGCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGG  339

seq1  GATTAAAGGTGTGCATCACCACCTCCTGGCCAAGTGGCTATTTCTAGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGCATCACCACCTCCTGGCCAAGTGGCTATTTCTAGGCT  389

seq1  CCAGGATCCTCTATGACCTATCACAAAATCTTATTTCACTTACAAGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCCTCTATGACCTATCACAAAATCTTATTTCACTTACAAGCAAA  439

seq1  GAAAATCCCAGAGAGGAGAGAGGACTGGGCCAGTGAGACGATCCTCCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCAGAGAGGAGAGAGGACTGGGCCAGTGAGACGATCCTCCAGA  489

seq1  TGGCCTTTTGTCACCAAGCCTGAAGACCTGAGTTCTGTCCCCAGGTCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTTGTCACCAAGCCTGAAGACCTGAGTTCTGTCCCCAGGTCCTG  539

seq1  TGTGGTGGAAGGAGAGAGCTGATTCCCTCAGGTGTGCTCTGACTTCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGAAGGAGAGAGCTGATTCCCTCAGGTGTGCTCTGACTTCTGCA  589

seq1  TGGGCACAAATACAAGTAAATAAATGTAGTAAACATTTCAAATAAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAAATACAAGTAAATAAATGTAGTAAACATTTCAAATAAATGAA  639

seq1  CTTTCTTTATGATTTTTTTTTTGTATCCTGAGCATTTCTTACGAATGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATGATTTTTTTTTTGTATCCTGAGCATTTCTTACGAATGGAA  689

seq1  TCATCATGTGTGGCCTTTGCGACTTTTCTTGGCCAGCGAGACATAGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGTGTGGCCTTTGCGACTTTTCTTGGCCAGCGAGACATAGTCTG  739

seq1  GGTCGGAGCTTTGTCCCTGAGGTTGAGAGATGACTCAAGATGAAGAGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGAGCTTTGTCCCTGAGGTTGAGAGATGACTCAAGATGAAGAGTGC  789

seq1  TGGCTGCTCTTGCAGAAGACCCTGTCCCATTCTCGGAGAAAAACAAGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTCTTGCAGAAGACCCTGTCCCATTCTCGGAGAAAAACAAGTGA  839

seq1  GCTAATTCCATTTCCAGAGGACTCTACACCCTTTTATGGTCTTGTCAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTCCATTTCCAGAGGACTCTACACCCTTTTATGGTCTTGTCAGGC  889

seq1  ACCAGATACATACATGACACACACATGCAGGCAACATTTGTAAATAAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATACATACATGACACACACATGCAGGCAACATTTGTAAATAAGCC  939

seq1  ATTTTGTACATTGGCTTAAGCCATATGAACTATTTCCCTTTTGTAAACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACATTGGCTTAAGCCATATGAACTATTTCCCTTTTGTAAACAA  989

seq1  TTTTACCCCCCCTAAAGATAGGGTCTCATTGTATAGCATTGGCTAGCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCCCCCTAAAGATAGGGTCTCATTGTATAGCATTGGCTAGCCTG  1039

seq1  GAATTC  1055
      ||||||
seq2  GAATTC  1045

seq1: chr2_155276261_155277039
seq2: B6Ng01-114E03.g_71_850

seq1  GAATTCCA-GGCTAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCGAAAG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCTAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCGAAAG  50

seq1  CTATACAGAGATATATTCGTATACATAAACAATATTGTAGGAATACTTAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGATATATTCGTATACATAAACAATATTGTAGGAATACTTAT  100

seq1  AATGAGAAAAAATCAGAAATATCCATTGAGTAACACATAAGCAGAATATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAAAATCAGAAATATCCATTGAGTAACACATAAGCAGAATATG  150

seq1  CCATTAATAAAATTTAATTAGATATTTTTTTAAGATTTAGAAAGAAATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATAAAATTTAATTAGATATTTTTTTAAGATTTAGAAAGAAATGT  200

seq1  ATGGTATCTTAAAGGTGGGGGGAATCATAGCTAGGTGTGGTGGTGCCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATCTTAAAGGTGGGGGGAATCATAGCTAGGTGTGGTGGTGCCAAT  250

seq1  ATGCAACCCACACCTCAGAAGAAGAGGAAGGAGGTTTGTAAGACTTTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCCACACCTCAGAAGAAGAGGAAGGAGGTTTGTAAGACTTTCTT  300

seq1  AAAAAAGAAAAAAAGACAAGAAAAAAAAGTTGTAGAACAATTCATAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAAAGACAAGAAAAAAAAGTTGTAGAACAATTCATAAAAT  350

seq1  AACTTCCTAAGAGAAAATATATCAGTATATATATTGAATTTTCAGAGTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTAAGAGAAAATATATCAGTATATATATTGAATTTTCAGAGTAC  400

seq1  AGAGAAAACAAAGGAGAATCACATTCTGCTATTCAAATCATATGATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACAAAGGAGAATCACATTCTGCTATTCAAATCATATGATACAT  450

seq1  TTGGAGCTGGGAACTGGAGAAAAGGAGATGCTAGCTTTCATGGCCTATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTGGGAACTGGAGAAAAGGAGATGCTAGCTTTCATGGCCTATAC  500

seq1  GACAGGTGTTCAGTTTGTTGCAATAAACTACTGCTATGGGAGTTAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGTTCAGTTTGTTGCAATAAACTACTGCTATGGGAGTTAAAAAA  550

seq1  AAAAACTTTAAGTATAATTCATAAAACAAAAGAAATAAGAAAATGATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTAAGTATAATTCATAAAACAAAAGAAATAAGAAAATGATAAA  600

seq1  CATGATAATTACTTAAACTGATATTGTTATATAAAAGGTAGCCAAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATTACTTAAACTGATATTGTTATATAAAAGGTAGCCAAATAAA  650

seq1  ACTCTTAGAGACTACAGAATAAAAATAAATTCTAGATGCTTTTAGGTAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGAGACTACAGAATAAAAATAAATTCTAGATGCTTTTAGGTAGG  700

seq1  CACATAAAGACCTTTTATGAATTAAAAATTTACTTGCAGGGGGCTGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAGACCTTTTATGAATTAAAAATTTACTTGCAGGGGGCTGTGTC  750

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  779
      |||||||||||||||||||||||||||| |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAG  780