BAC Information

Click to search

BAC

Clone NameB6Ng01-114I22
Chromosome2 (Build37)
Map Location 79,193,266 - 79,382,104
singlet/doubletdoublet
Overlap geneCerkl, Neurod1
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114I22.bB6Ng01-114I22.g
ACCDH920049DH920050
length1,1121,118
definitionDH920049|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I22, 5' end.DH920050|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,193,266 - 79,194,377)(79,380,979 - 79,382,104)
sequence
gaattctctttaatcacacactttttttcgttttcatacgaaaaaatatt
tttcctgtttttgtcttaacagttttgtacagtgatttctgtgttggtta
gttttatatcaacttgacataagccagagtcatttggggagaagggaatg
tcagttgagaaagtgccctaccagattggcctgtgggcatcttcttggtt
gatgcttgcaactcactgtgtgtagtgtaactactgggcaggtggtctgg
atgccatgacaaagtaggctgcgtaagctacgaagagcaagccagtaagc
agcattcctctatggcctctgggttctttcctcaagttcctgccctgact
tctctacatactgtaattaatacaagctggaaaatgaaacaagccctttc
tatcttcatggtgctttaccgcagcgatataaactcttctttaaaatgaa
aaataaagtaataaattccctctattattgctcagtgggttgagtgaatt
atacacataataaaattttcttttctaaatcatagcctttctccatttcc
atggctctgacctctgctttctcccaaccttatccacaaggaatcctgta
ccctgcatcaaaccttgcctagattagatggaatggttcccctgatctga
aataccccacagttctctcctgagtctcaggtcaaactcagactgctttc
catggcatgcatgcaggactgtccaccagctggcctactgtgacaccatc
atctcccattaatggctcccaggttacccctatgctttttttttttttaa
tttgtgcatgctatggtggaacctacatcttaggtgttacttactcaata
tatgttctgtatacacacaaaacagcattattgctgtactaaggcactgg
gggatatgcctggcatagagatgagagccatgagcagattgccctccagg
acctgggtctctatccaggcagaaggaatcttcttggctcttctaggtat
ctgctgatagtacaactaccttgggtccatgttttacctccggagacgtt
gtaaataccatgttcaaagcagccatgttttcaaactccctctctagtac
tagaggtcatta
gaattctgtccaaaatgaacctgagaaaaataggcaaaataaaaatcaat
gtttacattgaagttttgattaaaataaagtaactaaaatttgaaatatt
ctctcaaataaggtaaattagctcttctgtattagaaaaaaattttagct
ttggacagaatcttcaaatggtcttgagaataaggtcttcttgaagacac
ttttcttgtatatttgataaaatcgtgtttcgtgagtatccaagcaatgc
agagacagcactatgccaatcttttcatttcttagatcacaatcactttc
aactgaagagccataaagataagcactctcaacttgctaagctgttgtca
taagcacagggctaaccaacccgaacaggttctgtaacccatgtaagaaa
caaggtttttttgtttttgtttttcttttttttttcatccttccttgtgg
ataaaactggttacctctacttgaatcttaacataaactgattattaact
attaattactggtagccattgtcagattctcatatttgaggctctgatag
taatgtcatctctgctcaagaatttgaaattacagattcaacaatttcaa
tagatagtgtattaaaatttaaaatgtctaaattgaccaaaagagtcaac
tttaaaaggttatattttgtctaaaaaagaataagggattttagaatact
taacctggaatgaaaaataaacaaagttttacctgtgttcaggtatttgt
gtataacatcaaaaaggttgcttatgtcttttgagcttttgtctgcacat
ataagaaatgggtcatctttcagaatgctttctggcagattaagtagaga
acatatgtataataagtcatccgtacatgataggcaacgggcactcaaat
tgctaacaacacactccatctgtagaccccaagtatggctcctaagaaaa
cttgcctgtgtactggttgatgctctcaactctgtaagtacccttccaaa
cataaatgcatgagaaatactatattcagataggaaccgcttgagccaag
tccctctcaggttttctggaagagaaaatggcgtccaggatctcgactga
ttcgtgtgtctcacactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79193266_79194377
seq2: B6Ng01-114I22.b_45_1156

seq1  GAATTCTCTTTAATCACACACTTTTTTT-GTTTTCATACGAAAAAATATT  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTCTTTAATCACACACTTTTTTTCGTTTTCATACGAAAAAATATT  50

seq1  TTTCCTGTTTTTGTCTTAACAGTTTTGTACAGTGATTTCTGTGTTGGTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTTTGTCTTAACAGTTTTGTACAGTGATTTCTGTGTTGGTTA  100

seq1  GTTTTATATCAACTTGACATAAGCCAGAGTCATTTGGGGAGAAGGGAATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATCAACTTGACATAAGCCAGAGTCATTTGGGGAGAAGGGAATG  150

seq1  TCAGTTGAGAAAGTGCCCTACCAGATTGGCCTGTGGGCATCTTCTTGGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGAGAAAGTGCCCTACCAGATTGGCCTGTGGGCATCTTCTTGGTT  200

seq1  GATGCTTGCAACTCACTGTGTGTAGTGTAACTACTGGGCAGGTGGTCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGCAACTCACTGTGTGTAGTGTAACTACTGGGCAGGTGGTCTGG  250

seq1  ATGCCATGACAAAGTAGGCTGCGTAAGCTACGAAGAGCAAGCCAGTAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGACAAAGTAGGCTGCGTAAGCTACGAAGAGCAAGCCAGTAAGC  300

seq1  AGCATTCCTCTATGGCCTCTGGGTTCTTTCCTCAAGTTCCTGCCCTGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCTCTATGGCCTCTGGGTTCTTTCCTCAAGTTCCTGCCCTGACT  350

seq1  TCTCTACATACTGTAATTAATACAAGCTGGAAAATGAAACAAGCCCTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACATACTGTAATTAATACAAGCTGGAAAATGAAACAAGCCCTTTC  400

seq1  TATCTTCATGGTGCTTTACCGCAGCGATATAAACTCTTCTTTAAAATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATGGTGCTTTACCGCAGCGATATAAACTCTTCTTTAAAATGAA  450

seq1  AAATAAAGTAATAAATTCCCTCTATTATTGCTCAGTGGGTTGAGTGAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTAATAAATTCCCTCTATTATTGCTCAGTGGGTTGAGTGAATT  500

seq1  ATACACATAATAAAATTTTCTTTTCTAAATCATAGCCTTTCTCCATTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATAATAAAATTTTCTTTTCTAAATCATAGCCTTTCTCCATTTCC  550

seq1  ATGGCTCTGACCTCTGCTTTCTCCCAACCTTATCCACAAGGAATCCTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGACCTCTGCTTTCTCCCAACCTTATCCACAAGGAATCCTGTA  600

seq1  CCCTGCATCAAACCTTGCCTAGATTAGATGGAATGGTTCCCCTGATCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCAAACCTTGCCTAGATTAGATGGAATGGTTCCCCTGATCTGA  650

seq1  AATACCCCACAGTTCTCTCCTGAGTCTCAGGTCAAACTCAGACTGCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCCACAGTTCTCTCCTGAGTCTCAGGTCAAACTCAGACTGCTTTC  700

seq1  CATGGCATGCATGCAGGACTGTCCACCAGCTGGCCTACTGTGACACCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATGCATGCAGGACTGTCCACCAGCTGGCCTACTGTGACACCATC  750

seq1  ATCTCCCATTAATGGCTCCCAGGTTACCCCTATGC-TTTTTTTTTTTTAA  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCTCCCATTAATGGCTCCCAGGTTACCCCTATGCTTTTTTTTTTTTTAA  800

seq1  TTTGTGCATGCTATGGTGGAACCTACATCTTAGGTGTTACTTACTCAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCATGCTATGGTGGAACCTACATCTTAGGTGTTACTTACTCAATA  850

seq1  TATGTTCTGTATACACACAAAACAGCATTATTGCTGTACTAAGGCACTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTGTATACACACAAAACAGCATTATTGCTGTACTAAGGCACTGG  900

seq1  GGGATATGCCTGGCATAAGAGATGAAGAGCCATGAGCAAGATTGCCCTCC  948
      |||||||||||||||| ||||||| |||||||||||| ||||||||||||
seq2  GGGATATGCCTGGCAT-AGAGATG-AGAGCCATGAGC-AGATTGCCCTCC  947

seq1  AGGACCTGGGTTCTCTATCCAGGCAGAAGGAATCTTC-TGGCTC-TCTAG  996
      |||||||||| |||||||||||||||||||||||||| |||||| |||||
seq2  AGGACCTGGG-TCTCTATCCAGGCAGAAGGAATCTTCTTGGCTCTTCTAG  996

seq1  GTTATCTGCTGATAGTACAACTACCTGGGTCCCATGTTTTACCTCC-GAG  1045
      | |||||||||||||||||||||||| ||  ||||||||||||||| |||
seq2  G-TATCTGCTGATAGTACAACTACCTTGGGTCCATGTTTTACCTCCGGAG  1045

seq1  ACGTTGTAAATACCATGTTCAGAGCAGCCATGTTTTCAAACTCCCTCTCT  1095
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACGTTGTAAATACCATGTTCAAAGCAGCCATGTTTTCAAACTCCCTCTCT  1095

seq1  AGTACTAGAGGTCATTA  1112
      |||||||||||||||||
seq2  AGTACTAGAGGTCATTA  1112

seq1: chr2_79380979_79382104
seq2: B6Ng01-114I22.g_68_1185 (reverse)

seq1  AAGTGTGAGCACACA-GAATCAGTCGAGGACTCCTGGGCGCCATCTTCTC  49
      ||||||||| ||||| ||||||||||||   |||||| |||||| |||| 
seq2  AAGTGTGAG-ACACACGAATCAGTCGAG--ATCCTGGACGCCATTTTCT-  46

seq1  CTTCCAGAAAACCTGAAGAGTGACTTTGCTCTAGCGTTTCCTATCTGGAT  99
      ||||||||||||||| |||| ||||| |||| |||| ||||||||| || 
seq2  CTTCCAGAAAACCTG-AGAGGGACTTGGCTCAAGCGGTTCCTATCT-GAA  94

seq1  TATGGTATTTCTCCATGCATTTATGTTTTGGAAGGGTACTTACAGAGTTG  149
      ||| |||||||| |||||||||||| ||||||||||||||||||||||| 
seq2  TATAGTATTTCT-CATGCATTTATG-TTTGGAAGGGTACTTACAGAGTT-  141

seq1  GAGAGCATCAACCAGTACACAGGCAAGTTTTCTTAGGAGCCATACTTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATCAACCAGTACACAGGCAAGTTTTCTTAGGAGCCATACTTGGG  191

seq1  GTCTACAGATGGAGTGTGTTGTTAGCAATTTGAGTGCCCGTTGCCTATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGATGGAGTGTGTTGTTAGCAATTTGAGTGCCCGTTGCCTATCA  241

seq1  TGTACGGATGACTTATTATACATATGTTCTCTACTTAATCTGCCAGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGATGACTTATTATACATATGTTCTCTACTTAATCTGCCAGAAAG  291

seq1  CATTCTGAAAGATGACCCATTTCTTATATGTGCAGACAAAAGCTCAAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAAAGATGACCCATTTCTTATATGTGCAGACAAAAGCTCAAAAG  341

seq1  ACATAAGCAACCTTTTTGATGTTATACACAAATACCTGAACACAGGTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCAACCTTTTTGATGTTATACACAAATACCTGAACACAGGTAAA  391

seq1  ACTTTGTTTATTTTTCATTCCAGGTTAAGTATTCTAAAATCCCTTATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTATTTTTCATTCCAGGTTAAGTATTCTAAAATCCCTTATTCT  441

seq1  TTTTTAGACAAAATATAACCTTTTAAAGTTGACTCTTTTGGTCAATTTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGACAAAATATAACCTTTTAAAGTTGACTCTTTTGGTCAATTTAG  491

seq1  ACATTTTAAATTTTAATACACTATCTATTGAAATTGTTGAATCTGTAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAATTTTAATACACTATCTATTGAAATTGTTGAATCTGTAATT  541

seq1  TCAAATTCTTGAGCAGAGATGACATTACTATCAGAGCCTCAAATATGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTTGAGCAGAGATGACATTACTATCAGAGCCTCAAATATGAGA  591

seq1  ATCTGACAATGGCTACCAGTAATTAATAGTTAATAATCAGTTTATGTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAATGGCTACCAGTAATTAATAGTTAATAATCAGTTTATGTTAA  641

seq1  GATTCAAGTAGAGGTAACCAGTTTTATCCACAAGGAAGGATGAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGTAGAGGTAACCAGTTTTATCCACAAGGAAGGATGAAAAAAAA  691

seq1  AAGAAAAACAAAAACAAAAAAACCTTGTTTCTTACATGGGTTACAGAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACAAAAACAAAAAAACCTTGTTTCTTACATGGGTTACAGAACC  741

seq1  TGTTCGGGTTGGTTAGCCCTGTGCTTATGACAACAGCTTAGCAAGTTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGGTTGGTTAGCCCTGTGCTTATGACAACAGCTTAGCAAGTTGAG  791

seq1  AGTGCTTATCTTTATGGCTCTTCAGTTGAAAGTGATTGTGATCTAAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTATCTTTATGGCTCTTCAGTTGAAAGTGATTGTGATCTAAGAAA  841

seq1  TGAAAAGATTGGCATAGTGCTGTCTCTGCATTGCTTGGATACTCACGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATTGGCATAGTGCTGTCTCTGCATTGCTTGGATACTCACGAAA  891

seq1  CACGATTTTATCAAATATACAAGAAAAGTGTCTTCAAGAAGACCTTATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTTTATCAAATATACAAGAAAAGTGTCTTCAAGAAGACCTTATTC  941

seq1  TCAAGACCATTTGAAGATTCTGTCCAAAGCTAAAATTTTTTTCTAATACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCATTTGAAGATTCTGTCCAAAGCTAAAATTTTTTTCTAATACA  991

seq1  GAAGAGCTAATTTACCTTATTTGAGAGAATATTTCAAATTTTAGTTACTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTAATTTACCTTATTTGAGAGAATATTTCAAATTTTAGTTACTT  1041

seq1  TATTTTAATCAAAACTTCAATGTAAACATTGATTTTTATTTTGCCTATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATCAAAACTTCAATGTAAACATTGATTTTTATTTTGCCTATTT  1091

seq1  TTCTCAGGTTCATTTTGGACAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  TTCTCAGGTTCATTTTGGACAGAATTC  1118