BAC Information

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BAC

Clone NameB6Ng01-114P05
Chromosome2 (Build37)
Map Location 90,827,959 - 90,966,708
singlet/doubletdoublet
Overlap geneCugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3
Upstream geneOlfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1
Downstream geneMadd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114P05.bB6Ng01-114P05.g
ACCDH920340DH920341
length1,119568
definitionDH920340|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P05, 5' end.DH920341|Mus musculus domesticus DNA, BAC clone: B6Ng01-114P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,827,959 - 90,829,086)(90,966,136 - 90,966,708)
sequence
gaattccagtcctgtgtaagtatttttgttgtcctatttttatcataagc
agagggaactgggctgttattattatttggtgaaaccggtcccttaaaag
aaacttctttagaaagtctacatttgattttaattacttagtctaattct
tataactgctaattgcttccaggatgaaactaagttctttgcatgagggt
acacttgatatatgactagcaacattagttcaagtgtactggctcccatc
tcttaaaactgtagtgtttagccatacgacagattccaaggtgtttttta
aactggctttactgctttgagtgggtatgcaatagttaaataatcctttg
ggaattaaatattttgttattgtttttgtttttatttacttactttttat
tttttttgagacagggtcttgtgtaacccaggctggtctggaactccctc
tatagccgaagatgaccttgaactcctgatccttctgcttctacttcttg
ggtgctgggattgcaggcatgagccacaaagctcagtttgccagacatag
aacccagggcttttgtgtatattaggaaaacactgtcatcctcagacctg
attgctattttttgagatagtttccctatatagctcgactggcctcatga
tcctctgtcacatctgctgaggtgctatgtttgtatacaagtgtaactat
accccactacactagttttttaactattatatattcttaagctcttgtca
cagagaacactggtagttatgaatattacttagtattacatgtagtgtat
ttgcattcatacagtatattatgaagataattcttgactttcattttctt
ctatcttcttgcttattgaaatacaattcagcatgtaatttcaataatat
tagcatatcctccatcataaaaaaaacaatcagtaaaacaaaattatatc
atttttgataggcagtttgctcaataattgtggtgcaggatggcttacta
ggcaaatgttaacctggacctgagttggggctatagggtactggagttct
ggacttggtggagaggatccatttcagctcacttcactacagacctcaat
gtgtttatttgtgttattt
ctgtcccggtttccttcagtggtggactacaatgtggaagtgtaagccaa
atgaacccttttctcctcgacttgctttcttatcacagtgtttccttaca
gccatagaagccctaactaagacaggggtcttaggtcctattcccagaca
tttgccatccctgtgtctgaagtaggaaggggctagggttgcgatgggat
gtgggggtaggagaaaaggatgaggtggcaacaaatggatcccaagactc
accctgcctaggcacaaagtcaatcttgacctctgaaagagaaggaaagc
aaggaacattaagggaagggaaggaccaagacatagggcatcctggacat
gccccaccccacacacacacacagacaggcacatacacacacacagacac
acacacacacacacacgcatgcacacacacacacacatacacacacagac
atacacacacagacatacacacacacacacaatgctagctcacccatgaa
gtggagcttggcagacaggttgcaggcaaacccttcagggacaaaagctg
ttgtcagcctcatcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90827959_90829086
seq2: B6Ng01-114P05.b_45_1163

seq1  GAATTCCAGTCCTGTGTAAGTATTTTTGTTGTCCTATTTTTATCATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGTGTAAGTATTTTTGTTGTCCTATTTTTATCATAAGC  50

seq1  AGAGGGAACTGGGCTGTTATTATTATTTGGTGAAACCGGTCCCTTAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACTGGGCTGTTATTATTATTTGGTGAAACCGGTCCCTTAAAAG  100

seq1  AAACTTCTTTAGAAAGTCTACATTTGATTTTAATTACTTAGTCTAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTTTAGAAAGTCTACATTTGATTTTAATTACTTAGTCTAATTCT  150

seq1  TATAACTGCTAATTGCTTCCAGGATGAAACTAAGTTCTTTGCATGAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCTAATTGCTTCCAGGATGAAACTAAGTTCTTTGCATGAGGGT  200

seq1  ACACTTGATATATGACTAGCAACATTAGTTCAAGTGTACTGGCTCCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGATATATGACTAGCAACATTAGTTCAAGTGTACTGGCTCCCATC  250

seq1  TCTTAAAACTGTAGTGTTTAGCCATACGACAGATTCCAAGGTGTTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACTGTAGTGTTTAGCCATACGACAGATTCCAAGGTGTTTTTTA  300

seq1  AACTGGCTTTACTGCTTTGAGTGGGTATGCAATAGTTAAATAATCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTACTGCTTTGAGTGGGTATGCAATAGTTAAATAATCCTTTG  350

seq1  GGAATTAAATATTTTGTTATTGTTTTTGTTTTTATTTACTTACTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAATATTTTGTTATTGTTTTTGTTTTTATTTACTTACTTTTTAT  400

seq1  TTTTTTTGAGACAGGGTCTTGTGTAACCCAGGCTGGTCTGGAACTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGGGTCTTGTGTAACCCAGGCTGGTCTGGAACTCCCTC  450

seq1  TATAGCCGAAGATGACCTTGAACTCCTGATCCTTCTGCTTCTACTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCGAAGATGACCTTGAACTCCTGATCCTTCTGCTTCTACTTCTTG  500

seq1  GGTGCTGGGATTGCAGGCATGAGCCACAAAGCTCAGTTTGCCAGACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGATTGCAGGCATGAGCCACAAAGCTCAGTTTGCCAGACATAG  550

seq1  AACCCAGGGCTTTTGTGTATATTAGGAAAACACTGTCATCCTCAGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGCTTTTGTGTATATTAGGAAAACACTGTCATCCTCAGACCTG  600

seq1  ATTGCTATTTTTTGAGATAGTTTCCCTATATAGCTCGACTGGCCTCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATTTTTTGAGATAGTTTCCCTATATAGCTCGACTGGCCTCATGA  650

seq1  TCCTCTGTCACATCTGCTGAGGTGCTATGTTTGTATACAAGTGTAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTCACATCTGCTGAGGTGCTATGTTTGTATACAAGTGTAACTAT  700

seq1  ACCCCACTACACTAG-TTTTTAACTATTATATATTCTTAAGCTCTTGTCA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCCCACTACACTAGTTTTTTAACTATTATATATTCTTAAGCTCTTGTCA  750

seq1  CAGAGAACACTGGTAGTTATGAATATTACTTAGTATTACATGTAGTGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAGAACACTGGTAGTTATGAATATTACTTAGTATTACATGTAGTGTA-  799

seq1  TTTGCATTCATACAGTATATTATGAAGATAATTCTGAACTTTCATTTTCT  849
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTTGCATTCATACAGTATATTATGAAGATAATTCTTGACTTTCATTTTCT  849

seq1  TCTATCTTCTTGCTAATTGAAATACAATTCAGCATGTAATTTCAATAATA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCTTGCTTATTGAAATACAATTCAGCATGTAATTTCAATAATA  899

seq1  TTAGCATATCCT-CATCATTAAAAAAACAATCAGTAAAACAAAATTATAT  948
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTAGCATATCCTCCATCATAAAAAAAACAATCAGTAAAACAAAATTATAT  949

seq1  CATTTTTGATAGGCAGTTTGCTCAAATAAATTGTGGTTGCAGGAATGCTA  998
      |||||||||||||||||||||||||   |||||||| |||||||  ||| 
seq2  CATTTTTGATAGGCAGTTTGCTCAA--TAATTGTGG-TGCAGGATGGCTT  996

seq1  GCTAGGCAAAATGTTAACCTGACCCTGAGTTGGGGCTATAGGGAACCTGA  1048
       |||||| |||||||||||||  |||||||||||||||||||| ||  ||
seq2  ACTAGGC-AAATGTTAACCTGGACCTGAGTTGGGGCTATAGGGTACTGGA  1045

seq1  GTTCTGGACTTGGTAGAGAAGGATCCCATTTACAGCCTCCACTTCTACAT  1098
      |||||||||||||| ||| ||||| |||||| ||||   |||||| ||  
seq2  GTTCTGGACTTGGTGGAG-AGGAT-CCATTT-CAGC--TCACTTC-ACTA  1089

seq1  CAGACCTCAGT-TGTGTATTATTTGTTATTT  1128
      ||||||||| | ||| |||| | ||||||||
seq2  CAGACCTCAATGTGTTTATT-TGTGTTATTT  1119

seq1: chr2_90966136_90966708
seq2: B6Ng01-114P05.g_66_639 (reverse)

seq1  TGCTGATGAGGCTGACTACAGC-TTTGTCCCTGAAGGGTTTGCCTGCAAC  49
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  TGCTGATGAGGCTGACAACAGCTTTTGTCCCTGAAGGGTTTGCCTGCAAC  50

seq1  CTGTCTGCCAAGCTCCACTTCATGGGTGAGCTAGCATTGTGTGTGTGTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCAAGCTCCACTTCATGGGTGAGCTAGCATTGTGTGTGTGTGT  100

seq1  GTATGTCTGTGTGTGTATGTCTGTGTGTGTATGTGTGTGTGTGTGTGCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTGTGTGTGTATGTCTGTGTGTGTATGTGTGTGTGTGTGTGCAT  150

seq1  GCGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTATGTGCCTGTCTGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTATGTGCCTGTCTGTGT  200

seq1  GTGTGTGTGGGGTGGGGCATGTCCAGGATGCCCTATGTCTTGGTCCTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGGGTGGGGCATGTCCAGGATGCCCTATGTCTTGGTCCTTCC  250

seq1  CTTCCCTTAATGTTCCTTGCTTTCCTTCTCTTTCAGAGGTCAAGATTGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTAATGTTCCTTGCTTTCCTTCTCTTTCAGAGGTCAAGATTGAC  300

seq1  TTTGTGCCTAGGCAGGGTGAGTCTTGGGATCCATTTGTTGCCACCTCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTAGGCAGGGTGAGTCTTGGGATCCATTTGTTGCCACCTCATC  350

seq1  CTTTTCTCCTACCCCCACATCCCATCGCAACCCTAGCCCCTTCCTACTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCTACCCCCACATCCCATCGCAACCCTAGCCCCTTCCTACTTC  400

seq1  AGACACAGGGATGGCAAATGTCTGGGAATAGGACCTAAGACCCCTGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGGATGGCAAATGTCTGGGAATAGGACCTAAGACCCCTGTCTT  450

seq1  AGTTAGGGCTTCTATGGCTGTAAGGAAACACTGTGATAAGAAAGCAAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGCTTCTATGGCTGTAAGGAAACACTGTGATAAGAAAGCAAGTC  500

seq1  GAGGAGAAAAGGGTTCATTTGGCTTACACTTCCACATTGTAGTCCACCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAAAGGGTTCATTTGGCTTACACTTCCACATTGTAGTCCACCAC  550

seq1  TGAAGGAAACCGGGACAGGAATTC  573
      ||||||||||||||||||||||||
seq2  TGAAGGAAACCGGGACAGGAATTC  574