BAC Information

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BAC

Clone NameB6Ng01-115B18
Chromosome2 (Build37)
Map Location 147,905,239 - 148,024,849
singlet/doubletdoublet
Overlap genenone
Upstream geneNkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
Downstream geneSstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115B18.bB6Ng01-115B18.g
ACCDH920458DH920459
length1,109666
definitionDH920458|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B18, 5' end.DH920459|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,905,239 - 147,906,369)(148,024,184 - 148,024,849)
sequence
gaattcattacaacaatcaagttgtaaagctccaagttggagaattaaca
tgtgtgtctgaatttctatactagtatggagtttcttcaagaagactaga
caataacgaattgaataatcatttcttggaggagtagggtcaagcacaaa
agatgccgactggcatggtttcctgggagtggtagaggactgtacagaat
tcctcttcctggagcagggttgggggaagggacccagaagtcaggaccca
cctctagaagcatcccgggcagtcttatcctgggtggatgacaaagtgtc
caagatccattccattgtagggctccaagtcaatcatggcagaacaaatc
acaagtgtcaagagaggtggaaggagagtgtttgcctttctaggaggctg
gtatccatccatacagcaaagggcagagttgaagcaattgaagctcccat
tcagatgatgttgaagttagtattcacctagtgtcattctgcaaagaaat
ccattttgcccttcaaaacactctcattcatcttgaagacattcttggcc
aacaggtattattatgataataccttaagtttatttagtgcccccaccct
tttttcaggagaggttaaagccagttgggcagtcagtcaacaacatttat
tgaggtcttttagtgtgtagagacgtgtattaaatcactgtcggccccac
cagcccgtccaccacacacaccactgtggtcactgtcaggagctcatgcc
tcgggtgctgcacccgcctgtctgattcccagccagcagtttctatttac
cgaaattggcttaggttgcagcagacctgatgtcatatacactcttgcag
atttgttccctgcagattctgtctgtcctgacaagccacaagtgtcctgt
ccagggttcagtggcataagctgcccatgaagttcaagtaagaagcacaa
gtcatccaaaactgagtgacatacttttctctcttaagtaagtagagtgg
tttctgggagcttttagtgcttactgaccctgactgccgttgggaaagtc
acctggactttgcaagcacacatccccctacgtttacacacatgatggaa
ggattcatc
gaattcattaacttttatgtgatattaaaagctaaggactggctggagac
agacaggtcaatcatatagaaggaaggagacaatggcattctgcctatac
tagacaaagaaaccactggtagaaaccagtgaaggtgacagaggagagga
tgggaggggtggtcagtagccaatggccagtaggcttggggcaaaattaa
gtagagcatcttattgcaaaatctggaaaacaaaacaactctagaaatat
ttatctggaaaagtaactcaacagaaaacttccgtagttactagtggcca
cctttcactaggggtgggggtagttaacatggatcacagtggtgtcacct
accaggagtagctgcttgaccatttaacattgtggcaccatctccttcaa
tcctttcataccctgcaatttccacctttcccaggctactctgttttcca
ctgtacagtgaggatcatgtggttctcttccagcattttcttattttcca
tctttgttccactctcgtatctcttgtatctccaaagaaatgagccttag
catagttatcactcggcaaacttttgatcaaacttcagaacccatggtgc
aagagtggggctcaattcaagaaatcttaaatctcggtgtgtgtgtgtgt
gtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_147905239_147906369
seq2: B6Ng01-115B18.b_42_1150

seq1  GAATTCATTACAACAATCAAGTTGTAAAGCTCCAAGTTGGAGAATTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACAACAATCAAGTTGTAAAGCTCCAAGTTGGAGAATTAACA  50

seq1  TGTGTGTCTGAATTTCTATACTAGTATGGAGTTTCTTCAAGAAGACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGAATTTCTATACTAGTATGGAGTTTCTTCAAGAAGACTAGA  100

seq1  CAATAACGAATTGAATAATCATTTCTTGGAGGAGTAGGGTCAAGCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACGAATTGAATAATCATTTCTTGGAGGAGTAGGGTCAAGCACAAA  150

seq1  AGATGCCGACTGGCATGGTTTCCTGGGAGTGGTAGAGGACTGTACAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCGACTGGCATGGTTTCCTGGGAGTGGTAGAGGACTGTACAGAAT  200

seq1  TCCTCTTCCTGGAGCAGGGTTGGGGGAAGGGACCCAGAAGTCAGGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTGGAGCAGGGTTGGGGGAAGGGACCCAGAAGTCAGGACCCA  250

seq1  CCTCTAGAAGCATCCCGGGCAGTCTTATCCTGGGTGGATGACAAAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAAGCATCCCGGGCAGTCTTATCCTGGGTGGATGACAAAGTGTC  300

seq1  CAAGATCCATTCCATTGTAGGGCTCCAAGTCAATCATGGCAGAACAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCATTCCATTGTAGGGCTCCAAGTCAATCATGGCAGAACAAATC  350

seq1  ACAAGTGTCAAGAGAGGTGGAAGGAGAGTGTTTGCCTTTCTAGGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTCAAGAGAGGTGGAAGGAGAGTGTTTGCCTTTCTAGGAGGCTG  400

seq1  GTATCCATCCATACAGCAAAGGGCAGAGTTGAAGCAATTGAAGCTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATCCATACAGCAAAGGGCAGAGTTGAAGCAATTGAAGCTCCCAT  450

seq1  TCAGATGATGTTGAAGTTAGTATTCACCTAGTGTCATTCTGCAAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGATGTTGAAGTTAGTATTCACCTAGTGTCATTCTGCAAAGAAAT  500

seq1  CCATTTTGCCCTTCAAAACACTCTCATTCATCTTGAAGACATTCTTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCCCTTCAAAACACTCTCATTCATCTTGAAGACATTCTTGGCC  550

seq1  AACAGGTATTATTATGATAATACCTTAAGTTTATTTAGTGCCCCCACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTATTATTATGATAATACCTTAAGTTTATTTAGTGCCCCCACCCT  600

seq1  TTTTTCAGGAGAGGTTAAAGCCAGTTGGGCAGTCAGTCAACAACATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGAGAGGTTAAAGCCAGTTGGGCAGTCAGTCAACAACATTTAT  650

seq1  TGAGGTCTTTTAGTGTGTAGAGACGTGTATTAAATCACTGTCGGCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTTTTAGTGTGTAGAGACGTGTATTAAATCACTGTCGGCCCCAC  700

seq1  CAGCCCGTCCACCACACACACCACTGTGGTCACTGTCAGGAGCTCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCGTCCACCACACACACCACTGTGGTCACTGTCAGGAGCTCATGCC  750

seq1  TCGGGTGCTGCACCCGCCTGTCTGATTCCCAGCCAGCAGTTTCTATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGCTGCACCCGCCTGTCTGATTCCCAGCCAGCAGTTTCTATTTAC  800

seq1  CGAAATTGGCTTAGGTTGCAGCAGACCTGATGTCATATACACTCTTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTGGCTTAGGTTGCAGCAGACCTGATGTCATATACACTCTTGCAG  850

seq1  ATTTGTTCCCTGCAGATTCTGTCTGTCCTGACAAGCCACAAGTGTCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCCTGCAGATTCTGTCTGTCCTGACAAGCCACAAGTGTCCTGT  900

seq1  CCAGGGTTCAGTGGCATAAGCTGCCCATGAAGTTCAAAGTAGGAAGCACA  950
      ||||||||||||||||||||||||||||||||||| ||||| ||||||| 
seq2  CCAGGGTTCAGTGGCATAAGCTGCCCATGAAGTTC-AAGTAAGAAGCAC-  948

seq1  AAGTCATCCAAAACTGAAGTGACATAACTTTTCTCTCTTAAGTAAAGTAA  1000
      |||||||||||||||| |||||||| ||||||||||||||||| |||| |
seq2  AAGTCATCCAAAACTG-AGTGACAT-ACTTTTCTCTCTTAAGT-AAGT-A  994

seq1  GAGTTGGTTTCCTGGGAGCTTTTTAGGTGCTTACCTGAACCCCTGGCCTG  1050
      ||| |||||| ||||||||||||   ||||||| ||||  |||| | |||
seq2  GAG-TGGTTT-CTGGGAGCTTTT--AGTGCTTA-CTGA--CCCT-GACTG  1036

seq1  CCCGTTGGGAAAGTCCCCTGGACTTTGGCCAAAGCACACA--CCCCTCCG  1098
       |||||||||||||| |||||||||||    |||||||||  ||||| ||
seq2  -CCGTTGGGAAAGTCACCTGGACTTTG---CAAGCACACATCCCCCTACG  1082

seq1  TTCACACACAATGATGGGAAAGGAATTTTCATC  1131
      || |||||| |||||||  |||||   ||||||
seq2  TTTACACAC-ATGATGG--AAGGA---TTCATC  1109

seq1: chr2_148024184_148024849
seq2: B6Ng01-115B18.g_69_734 (reverse)

seq1  ACACACACACACACACACACACACACACACCGAGATTTAAGATTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACCGAGATTTAAGATTTCTTGA  50

seq1  ATTGAGCCCCACTCTTGCACCATGGGTTCTGAAGTTTGATCAAAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCCCACTCTTGCACCATGGGTTCTGAAGTTTGATCAAAAGTTTG  100

seq1  CCGAGTGATAACTATGCTAAGGCTCATTTCTTTGGAGATACAAGAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGATAACTATGCTAAGGCTCATTTCTTTGGAGATACAAGAGATAC  150

seq1  GAGAGTGGAACAAAGATGGAAAATAAGAAAATGCTGGAAGAGAACCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGAACAAAGATGGAAAATAAGAAAATGCTGGAAGAGAACCACAT  200

seq1  GATCCTCACTGTACAGTGGAAAACAGAGTAGCCTGGGAAAGGTGGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACTGTACAGTGGAAAACAGAGTAGCCTGGGAAAGGTGGAAATT  250

seq1  GCAGGGTATGAAAGGATTGAAGGAGATGGTGCCACAATGTTAAATGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTATGAAAGGATTGAAGGAGATGGTGCCACAATGTTAAATGGTCA  300

seq1  AGCAGCTACTCCTGGTAGGTGACACCACTGTGATCCATGTTAACTACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTACTCCTGGTAGGTGACACCACTGTGATCCATGTTAACTACCCC  350

seq1  CACCCCTAGTGAAAGGTGGCCACTAGTAACTACGGAAGTTTTCTGTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAGTGAAAGGTGGCCACTAGTAACTACGGAAGTTTTCTGTTGAG  400

seq1  TTACTTTTCCAGATAAATATTTCTAGAGTTGTTTTGTTTTCCAGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTCCAGATAAATATTTCTAGAGTTGTTTTGTTTTCCAGATTTTG  450

seq1  CAATAAGATGCTCTACTTAATTTTGCCCCAAGCCTACTGGCCATTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATGCTCTACTTAATTTTGCCCCAAGCCTACTGGCCATTGGCTA  500

seq1  CTGACCACCCCTCCCATCCTCTCCTCTGTCACCTTCACTGGTTTCTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACCCCTCCCATCCTCTCCTCTGTCACCTTCACTGGTTTCTACCA  550

seq1  GTGGTTTCTTTGTCTAGTATAGGCAGAATGCCATTGTCTCCTTCCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTTTGTCTAGTATAGGCAGAATGCCATTGTCTCCTTCCTTCTA  600

seq1  TATGATTGACCTGTCTGTCTCCAGCCAGTCCTTAGCTTTTAATATCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGACCTGTCTGTCTCCAGCCAGTCCTTAGCTTTTAATATCACAT  650

seq1  AAAAGTTAATGAATTC  666
      ||||||||||||||||
seq2  AAAAGTTAATGAATTC  666