BAC Information

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BAC

Clone NameB6Ng01-116F19
Chromosome2 (Build37)
Map Location 181,079,509 - 181,080,393
singlet/doubletsinglet
Overlap geneRtel1
Upstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3
Downstream geneArfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F19.bB6Ng01-116F19.g
ACCDH921379DH921380
length878883
definitionDH921379|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F19, 5' end.DH921380|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtctttgtgctagcatggcaagcacttcaccaactgaactat
ttccccagccccaaatgggagcaccattaaggttgtgcccatgtagatag
aggccagcatggaaggtggcaggctctctaattcaacagtgttcaggtaa
atcttgtgtgtagcctaagggcagagagttcaccacacaacagcactcaa
aaatatcagagcagtatccctgagtgcggtttgtacccatgagagtgttt
tgggggtgggttgagtactgatcattctcaagtactaattcttaaaactg
gaaataaggacctgggctgagatatactgtgagtggccactcagagctca
aacctagaactgataggagctgttttgtttttgttaatggttggttttgc
ttctcttccccctttcagaaaaaaaagtaaacttttattttgtagtaaca
tttcagaaaagttgcatattgtacaccacagagaatttcttgtgtgacct
ctcaaggttccaagtttctctaaggtcatctgccatttccacacgccttt
gggagcaccaggaagcccgggttggcacagctctccactgacttgagact
ttctttggatattcccacccagtctccaatatcctcctctaccctcagtc
ccctccatggcaccagccaccagcatgcctagagatgtcacagctcacgt
ttgtgaaggctgagacaacttctcaggcttcctttgtttcctgtgagctt
caattttaaggcttgctggccaggcattgagcagacagtactgcacgtag
gatctatggggtggactttctaatcattaaggtaaggagttttaggaaag
aatctcaaggacctgaggtgccctcttg
gaattcttattgattcattttccttctgtctcccacagacctgtctgatg
tttaagaccaggtgatgagtcacccaccctgagttttttttgttttgttt
gagacagggtttctctgtgtagccctggctgtcttggaactcccttggta
ggccagactgtcctcgaactcagaaatttgcctgcctctgcctcccaagt
gctgggattaaaggtgtgcgccaccacttcccggccctgagatttctttt
attctttaagtgtaaggttttttttttttttaagatttatttattttata
tatgtgagcatgctgtcactctcttcagacacaccaggagaggccattgg
atcctattacagatgtatatgagccaccatgtggttgctggagatgaact
cagtacccctggaagagcatcagtgctcttaatcactgagccatcgctcc
gggcaaattaaaaaaaattttttttgtgtgtattcttggagaaatacatg
actctcatgaaatcagggagccctgctcatccctcacatggccagtttag
gtcgtggtatgtgagggtgtttctaaacactcatgcaaggccaaggccca
gggaagagtggttcagacaacttctctttcctctcccaggttgtgtcagg
tggggatgagaacaaatgaaggcagctcaggatgttcagggcagcagcag
atgatgatgtcctaaaagaccagaagtctaggcagacacagaaaagtcct
gcgagaacacagtgcccatgctcacacaacccagctggacactgtgcctg
gaggctttcacacacgctgtgagggacttctttcacagcagaccctgtaa
tgagagtttgggttatcatttagttggagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181079509_181080393
seq2: B6Ng01-116F19.g_69_951

seq1  GAATTCTTATTGATTCATTTTCCTTCTGTCTCCCACAGACCTGTCTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGATTCATTTTCCTTCTGTCTCCCACAGACCTGTCTGATG  50

seq1  TTTAAGACCAGGTGATGAGTCACCCACCCTGAGTTTTTTTTGTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACCAGGTGATGAGTCACCCACCCTGAGTTTTTTTTGTTTTGTTT  100

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCCCTTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCCCTTGGTA  150

seq1  GGCCAGACTGTCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGACTGTCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGT  200

seq1  GCTGGGATTAAAGGTGTGCGCCACCACTTCCCGGCCCTGAGATTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGCGCCACCACTTCCCGGCCCTGAGATTTCTTTT  250

seq1  ATTCTTTAAGTGTAAGGTTTTTTTTTTTTTTAAGATTTATTTATTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAGTGTAAGGTTTTTTTTTTTTTTAAGATTTATTTATTTTATA  300

seq1  TATGTGAGCATGCTGTCACTCTCTTCAGACACACCAGGAGAGGCCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGCATGCTGTCACTCTCTTCAGACACACCAGGAGAGGCCATTGG  350

seq1  ATCCTATTACAGATGTATATGAGCCACCATGTGGTTGCTGGAGATGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTACAGATGTATATGAGCCACCATGTGGTTGCTGGAGATGAACT  400

seq1  CAGTACCCCTGGAAGAGCATCAGTGCTCTTAATCACTGAGCCATCGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCCTGGAAGAGCATCAGTGCTCTTAATCACTGAGCCATCGCTCC  450

seq1  GGGCAAATTAAAAAAAATTTTTTTTGTGTGTATTCTTGGAGAAATACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATTAAAAAAAATTTTTTTTGTGTGTATTCTTGGAGAAATACATG  500

seq1  ACTCTCATGAAATCAGGGAGCCCTGCTCATCCCTCACATGGCCAGTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGAAATCAGGGAGCCCTGCTCATCCCTCACATGGCCAGTTTAG  550

seq1  GTCGTGGTATGTGAGGGTGTTTCTAAACACTCATGCAAGGCCAAGGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGTATGTGAGGGTGTTTCTAAACACTCATGCAAGGCCAAGGCCCA  600

seq1  GGGAAGAGTGGTTCAGACAACTTCTCTTTCCTCTCCCAGGTTGTGTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTGGTTCAGACAACTTCTCTTTCCTCTCCCAGGTTGTGTCAGG  650

seq1  TGGGGATGAGAAC-AATGAAGGCAGCTCAGGAGGTTCAGGGCAGCAGCAG  699
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TGGGGATGAGAACAAATGAAGGCAGCTCAGGATGTTCAGGGCAGCAGCAG  700

seq1  ATGATGATGTCCTAAAAGACCAGAAGTCTAGGCAGACACAGAAAAGTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGTCCTAAAAGACCAGAAGTCTAGGCAGACACAGAAAAGTCCT  750

seq1  GCGAGAACACAGTG-CCATGCTCACACAACCCAGCTGGAACACAGTGCCT  798
      |||||||||||||| ||||||||||||||||||||||| |||| ||||||
seq2  GCGAGAACACAGTGCCCATGCTCACACAACCCAGCTGG-ACACTGTGCCT  799

seq1  GGAGGCTTTCACACACGCTGTGAGGGACTTCTATCACAGCAGAACCCTGG  848
      |||||||||||||||||||||||||||||||| ||||||||| |||||| 
seq2  GGAGGCTTTCACACACGCTGTGAGGGACTTCTTTCACAGCAG-ACCCTGT  848

seq1  AATGAGAGTTTGGGGTTATCAGTTTAGTTGGAGATGA  885
      ||||||||||| ||||||||| |||||||||||||||
seq2  AATGAGAGTTT-GGGTTATCA-TTTAGTTGGAGATGA  883