BAC Information

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BAC

Clone NameB6Ng01-117B03
Chromosome2 (Build37)
Map Location 41,099,235 - 41,278,507
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC666531, LOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B03.bB6Ng01-117B03.g
ACCDH921905DH921906
length1,1641,194
definitionDH921905|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B03, 5' end.DH921906|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,099,235 - 41,100,414)(41,277,291 - 41,278,507)
sequence
gaattctttgcttataggtataaatgccttgccttgagaaaaaatatttt
tgaaagtttcacgttcaagaaataattgagaaaaaagagaactaacaaaa
agaaaagtaaagaatgacatcagaagaaagccaccaagccaccgaaacca
ggaggattctatcgcaatggcagctgtgaaagatcctgctgccctcagat
cactagtgaaaccaggaacattaaatacagaaagtccttttctcaatgga
ggagataaaatacttgttttcctgcccagaaatctggaagtggattttgt
taatgacctggtgacttttttgctctttgctaaggcaaacctcacctacc
tttcactatagagtgagacctcacccaaattccccaaagtgattatccta
gactcttccttcccatgatctttatccacccttaggggaactgtcacact
actttatagcctgctgacctctatgctaccttggacaggaactgcactat
attttaggccttttagctatacaactcacactcatgagcacatgtacttt
gtaaaggagtttctatgtagtcacatgttaagttttactgtgcacctaga
atttgactgcttgttgcttggaaaaccctttgcatagtatagtgggcttt
tttgttgttgttttgttttgatttttaatatgctgacaatgaactgtttg
acattagggttcctgatatctgatttaggttgacaaaaccaatctgaaga
gattcttattgtcatcttttcatggttttgctttcctgtctgtacacctg
caggatcttcttcaaaagaccagcatatatagctagcgatacctgagatc
ttcatttgacatttatgcagaaatcatcactttcaaatagacattcctat
agttttgtaatgcatgcacacacacacacattttatatatatatatatat
atatatatatatatatatacatatatatattacatcattcatgacaatta
aaaagaatttcttttgcctctttacaagaaaggaaacccattgggtttta
attattctgttttaatttcacaaattgtcattagtcttttgtgtgagagg
aattttcattataagcacagtctagtcatcactagtaagtagcacattct
ctttctcaaactca
gaattcatttcatgtatacagtgagatattatcaaagccaatcccctaat
ttttctctttccagttctccaggtgtccccatgcatgactccctcctact
tggggtacatctgcttgaaacattatttttcagtatgaaagaagagggcg
tgaatacagatgatcaattgtttattcatgagtgcaggcaagaagtaaat
taaaccaaggatatataaaaatgcctatagaaactcaacagaaagctaat
tttaaaatataattcaatacttcagtgtgctgctatgtaatttacttcat
tctttcaacttgtatttccaagaattatttttattttcagatgtcctaat
tgtttcttttcatatttgcctctagttttagtgtatctatttatttttgt
cttaatcatttaatatactaaatttattatattattcatttgctttctat
ctgtaatctttgcagatatagttaatgttttacatatctgacgatcatgt
caggctaatcctatttttggttaaatctgctgaactttagttgccaagat
ttttatgaccttttctatttttcatataagttatttttcataattttgaa
ttttgagaacatgtaatgttcagatattatttgtgtgcctctgtgacatt
cctatatggctatgtctaggaatgtgtaccatggggacttttatacattt
tattaaaagtcttctattaatctttaccctagttttttacatgggcattt
tcccaagttgtaaagtacagtttgtgaaatatatgagattgctattggtt
tttaggagagaacaaaagcttttcactcacagtccagatttctgagagtt
tctttaagctacaagtagatttgaattgaccatgaagctagaatttagac
ctttaacatgctagatcatgctgtgatccacatattaagtggaactacag
tactgtatccttctctatatgacatatattccaactctcaatttataggc
aaataacatttatatatgcaagcaccaagcgaatgtcatattttgaacat
cgtccattatcttccattttatacacttttgaaaacccatataagaatta
ctattgttctttgcacgcggttctatgctaaccctttatcggttttctaa
agtttgtaatggtgtcttacactccccacagtttcttttccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41099235_41100414
seq2: B6Ng01-117B03.b_42_1205

seq1  GAATTCTTTGCTTATAGGTATAAATGCCTTGCCTTGAGAAAAAATATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTATAGGTATAAATGCCTTGCCTTGAGAAAAAATATTTT  50

seq1  TGAAAGTTTCACGTTCAAGAAATAATTGAGAAAAAAGAGAACTAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTTCACGTTCAAGAAATAATTGAGAAAAAAGAGAACTAACAAAA  100

seq1  AGAAAAGTAAAGAATGACATCAGAAGAAAGCCACCAAGCCACCGAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAAAGAATGACATCAGAAGAAAGCCACCAAGCCACCGAAACCA  150

seq1  GGAGGATTCTATCGCAATGGCAGCTGTGAAAGATCCTGCTGCCCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCTATCGCAATGGCAGCTGTGAAAGATCCTGCTGCCCTCAGAT  200

seq1  CACTAGTGAAACCAGGAACATTAAATACAGAAAGTCCTTTTCTCAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGAAACCAGGAACATTAAATACAGAAAGTCCTTTTCTCAATGGA  250

seq1  GGAGATAAAATACTTGTTTTCCTGCCCAGAAATCTGGAAGTGGATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAATACTTGTTTTCCTGCCCAGAAATCTGGAAGTGGATTTTGT  300

seq1  TAATGACCTGGTGACTTTTTTGCTCTTTGCTAAGGCAAACCTCACCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTGGTGACTTTTTTGCTCTTTGCTAAGGCAAACCTCACCTACC  350

seq1  TTTCACTATAGAGTGAGACCTCACCCAAATTCCCCAAAGTGATTATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATAGAGTGAGACCTCACCCAAATTCCCCAAAGTGATTATCCTA  400

seq1  GACTCTTCCTTCCCATGATCTTTATCCACCCTTAGGGGAACTGTCACAAT  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTCTTCCTTCCCATGATCTTTATCCACCCTTAGGGGAACTGTCACACT  450

seq1  ACTTTATAGCCTGCTGACCTCTATGCTACCTTGGACAGGAACTGCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAGCCTGCTGACCTCTATGCTACCTTGGACAGGAACTGCACTAT  500

seq1  ATTTTAGGCCTTTTAGCTATACAACTCACACTCATGAGCACATGTACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGCCTTTTAGCTATACAACTCACACTCATGAGCACATGTACTTT  550

seq1  GTAAAGGAGTTTCTATGTAGTCACATGTTAAGTTTTACTGTGCACCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAGTTTCTATGTAGTCACATGTTAAGTTTTACTGTGCACCTAGA  600

seq1  ATTTGACTGCTTGTTGCTTGGAAAACCCTTTGCATAGTATAGTGGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGCTTGTTGCTTGGAAAACCCTTTGCATAGTATAGTGGGCTTT  650

seq1  TTTGTTGTTGTTTTGTTTTGATTTTTAATATGCTGACAATGAACTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGTTTTGTTTTGATTTTTAATATGCTGACAATGAACTGTTTG  700

seq1  ACATTAGGGTTCCTGATATCTGATTTAGGTTGACAAAACCAATCTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGGTTCCTGATATCTGATTTAGGTTGACAAAACCAATCTGAAGA  750

seq1  GATTCTTATTGTCATCTTTTCATGGTTTTGCTTTCCTGTCTGTACACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTATTGTCATCTTTTCATGGTTTTGCTTTCCTGTCTGTACACCTG  800

seq1  CAGGATCTTCTTCAAAAGACCAGCATATATAGCTAGCGATACCTGAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTTCTTCAAAAGACCAGCATATATAGCTAGCGATACCTGAGATC  850

seq1  TTCATTTGACATTTATGCAGAAATCATCACTTTCAAATAGACATTCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGACATTTATGCAGAAATCATCACTTTCAAATAGACATTCCTAT  900

seq1  AGTTTTGTAATGCATGCACACACACACACATTTTATATATATATATATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTAATGCATGCACACACACACACATTTTATATATATATATATAT  950

seq1  ATATATATATATATATATACATATATATATTACATCATTCAATGACAATT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATATATATATATATATACATATATATATTACATCATTC-ATGACAATT  999

seq1  AAAAAGAATTTCCTTTTGCCCTCTTTACAAGAAAGGGAGACCCCATTGTG  1050
      ||||||||||| |||||| |||||||||||||||||   | ||||||| |
seq2  AAAAAGAATTT-CTTTTG-CCTCTTTACAAGAAAGG--AAACCCATTGGG  1045

seq1  TTTTAAATAATTTCTGTATTTAAATTTTCACAAATTGTCATTTAGTCCTT  1100
      |||||| ||  |||||| |||||  ||||||||||||||| ||||||  |
seq2  TTTTAATTA--TTCTGT-TTTAA--TTTCACAAATTGTCA-TTAGTC--T  1087

seq1  TTTGTGTGAGAGGAATTTTCATTAT-AGCACAGTCTAGTTCAAATTCACT  1149
      ||||||||||||||||||||||||| |||||||||||| |||   |||||
seq2  TTTGTGTGAGAGGAATTTTCATTATAAGCACAGTCTAG-TCA---TCACT  1133

seq1  AGGTAGGTAGCACTTGCTC-TTCTCAAACTCA  1180
      | ||| ||||||| | ||| ||||||||||||
seq2  A-GTAAGTAGCACATTCTCTTTCTCAAACTCA  1164

seq1: chr2_41277291_41278507
seq2: B6Ng01-117B03.g_67_1260 (reverse)

seq1  GAAGGAAAAGAAAATGTGTGGGAGTATGTAAAGAACAACAATAACAAAAC  50
      ||||||||||||| |||| |||||  |||||   ||| || ||   ||||
seq2  GAAGGAAAAGAAACTGTG-GGGAG--TGTAA--GACACCATTA--CAAAC  43

seq1  TTTATGAAAAACAGTAAGAGGTCTAGCAATAGAACAGC-TGCAAAAGAAA  99
      |||| ||||| |  ||| |||  |||| ||||||| || ||| |||||| 
seq2  TTTA-GAAAACCGATAA-AGGGTTAGC-ATAGAACCGCGTGC-AAAGAA-  88

seq1  CAAATAGTAAATACTATAATGTGTTCTCAAAAGTGTATAAAATGGAAGAT  149
        |||||||| |  ||| ||| ||| ||||||||||||||||||||||| 
seq2  -CAATAGTAATTCTTAT-ATGGGTTTTCAAAAGTGTATAAAATGGAAGA-  135

seq1  TAATGGGAACGATGTTCAAAATATGACATTCGCTTGGTGCTTGCATATAT  199
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGG--ACGATGTTCAAAATATGACATTCGCTTGGTGCTTGCATATAT  183

seq1  AAATGTTTATTTTGCCTATAAATTGAGAAGTTGGAATATTATTGTCAATA  249
      |||||||   ||||||||||||||||| |||||||||||   |||| |||
seq2  AAATGTT--ATTTGCCTATAAATTGAG-AGTTGGAATAT--ATGTC-ATA  227

seq1  TAGAGAAGGATACAGTACTGTAGTTCCACTTAATATGTGGATCACAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGGATACAGTACTGTAGTTCCACTTAATATGTGGATCACAGCAT  277

seq1  GATCCTAGCATGTTAAAGGTCTAAATTCTAGCTTCATGGTCAATTCAAAT  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-CTAGCATGTTAAAGGTCTAAATTCTAGCTTCATGGTCAATTCAAAT  326

seq1  CTACTTGTAGCTTAAAGAAACTCTCAGAAATCTGGACTGTGAGTGAAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTAGCTTAAAGAAACTCTCAGAAATCTGGACTGTGAGTGAAAAG  376

seq1  CTTTTGTTCTCTCCTAAAAACCAATAGCAATCTCATATATTTCACAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCTCTCCTAAAAACCAATAGCAATCTCATATATTTCACAAACT  426

seq1  GTACTTTACAACTTGGGAAAATGCCCATGTAAAAAACTAGGGTAAAGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTACAACTTGGGAAAATGCCCATGTAAAAAACTAGGGTAAAGATT  476

seq1  AATAGAAGACTTTTAATAAAATGTATAAAAGTCCCCATGGTACACATTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGACTTTTAATAAAATGTATAAAAGTCCCCATGGTACACATTCC  526

seq1  TAGACATAGCCATATAGGAATGTCACAGAGGCACACAAATAATATCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATAGCCATATAGGAATGTCACAGAGGCACACAAATAATATCTGAA  576

seq1  CATTACATGTTCTCAAAATTCAAAATTATGAAAAATAACTTATATGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGTTCTCAAAATTCAAAATTATGAAAAATAACTTATATGAAAA  626

seq1  ATAGAAAAGGTCATAAAAATCTTGGCAACTAAAGTTCAGCAGATTTAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGGTCATAAAAATCTTGGCAACTAAAGTTCAGCAGATTTAACC  676

seq1  AAAAATAGGATTAGCCTGACATGATCGTCAGATATGTAAAACATTAACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGATTAGCCTGACATGATCGTCAGATATGTAAAACATTAACTA  726

seq1  TATCTGCAAAGATTACAGATAGAAAGCAAATGAATAATATAATAAATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAAAGATTACAGATAGAAAGCAAATGAATAATATAATAAATTTA  776

seq1  GTATATTAAATGATTAAGACAAAAATAAATAGATACACTAAAACTAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAATGATTAAGACAAAAATAAATAGATACACTAAAACTAGAGG  826

seq1  CAAATATGAAAAGAAACAATTAGGACATCTGAAAATAAAAATAATTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGAAAAGAAACAATTAGGACATCTGAAAATAAAAATAATTCTTG  876

seq1  GAAATACAAGTTGAAAGAATGAAGTAAATTACATAGCAGCACACTGAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAAGTTGAAAGAATGAAGTAAATTACATAGCAGCACACTGAAGT  926

seq1  ATTGAATTATATTTTAAAATTAGCTTTCTGTTGAGTTTCTATAGGCATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTATATTTTAAAATTAGCTTTCTGTTGAGTTTCTATAGGCATTT  976

seq1  TTATATATCCTTGGTTTAATTTACTTCTTGCCTGCACTCATGAATAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATCCTTGGTTTAATTTACTTCTTGCCTGCACTCATGAATAAACA  1026

seq1  ATTGATCATCTGTATTCACGCCCTCTTCTTTCATACTGAAAAATAATGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCATCTGTATTCACGCCCTCTTCTTTCATACTGAAAAATAATGTT  1076

seq1  TCAAGCAGATGTACCCCAAGTAGGAGGGAGTCATGCATGGGGACACCTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGATGTACCCCAAGTAGGAGGGAGTCATGCATGGGGACACCTGG  1126

seq1  AGAACTGGAAAGAGAAAAATTAGGGGATTGGCTTTGATAATATCTCACTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGAAAGAGAAAAATTAGGGGATTGGCTTTGATAATATCTCACTG  1176

seq1  TATACATGAAATGAATTC  1217
      ||||||||||||||||||
seq2  TATACATGAAATGAATTC  1194